Experiment set15IT018 for Agrobacterium fabrum C58
Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Group: in plantaMedia: Wheat_7dpi + Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Culturing: Agro_ML11, tube, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 10/20/22
Specific Phenotypes
For 5 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| D-Galacturonate and D-Glucuronate Utilization | 1 |
| D-gluconate and ketogluconates metabolism | 1 |
| Entner-Doudoroff Pathway | 1 |
| Phosphate metabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| D-fructuronate degradation | 4 | 4 | 1 |
| 4-deoxy-L-threo-hex-4-enopyranuronate degradation | 5 | 5 | 1 |
| D-galacturonate degradation I | 5 | 3 | 1 |
| superpathway of β-D-glucuronosides degradation | 7 | 5 | 1 |
| alginate degradation | 7 | 4 | 1 |
| 3,6-anhydro-α-L-galactopyranose degradation | 7 | 4 | 1 |
| Entner-Doudoroff pathway III (semi-phosphorylative) | 9 | 7 | 1 |
| superpathway of hexuronide and hexuronate degradation | 10 | 6 | 1 |
| superpathway of microbial D-galacturonate and D-glucuronate degradation | 31 | 22 | 1 |