Experiment set15IT016 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PS417_23545 -6.1 -3.3 gamma-glutamyl kinase compare
PS417_24745 -5.3 -6.6 gamma-glutamyl phosphate reductase compare
PS417_27795 -5.2 -1.3 orotate phosphoribosyltransferase compare
PS417_06375 -4.9 -1.2 deoxycytidine triphosphate deaminase compare
PS417_22565 -4.1 -1.0 formyltetrahydrofolate deformylase compare
PS417_01605 -4.0 -2.0 phosphoglycerate mutase compare
PS417_26730 -4.0 -1.4 pyrroline-5-carboxylate reductase compare
PS417_27195 -3.7 -1.3 N-acetylglutamate synthase compare
PS417_01915 -3.4 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_03260 -3.3 -1.0 5S ribosomal RNA compare
PS417_22450 -3.3 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_27865 -3.0 -2.3 LysR family transcriptional regulator compare
PS417_16555 -3.0 -2.4 cupin compare
PS417_11705 -2.9 -5.7 cyclic peptide transporter compare
PS417_04365 -2.8 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_05830 -2.6 -4.7 hypothetical protein compare
PS417_08125 -2.6 -0.6 prephenate dehydratase compare
PS417_04305 -2.4 -1.6 aspartate ammonia-lyase compare
PS417_07170 -2.3 -4.9 hypothetical protein compare
PS417_08155 -2.2 -1.6 integration host factor subunit beta compare
PS417_07140 -2.2 -4.5 peptidase M48 compare
PS417_19955 -2.2 -1.9 hypothetical protein compare
PS417_27800 -2.1 -2.8 exodeoxyribonuclease III compare
PS417_13455 -2.1 -2.7 alkaline proteinase inhibitor compare
PS417_21480 -2.1 -1.6 23S rRNA pseudouridylate synthase compare
PS417_01580 -2.0 -1.6 imidazole glycerol phosphate synthase compare
PS417_02720 -2.0 -1.1 TetR family transcriptional regulator compare
PS417_27870 -1.9 -2.9 ATP-dependent DNA helicase RecG compare
PS417_22445 -1.9 -2.9 ATP-dependent DNA helicase RuvB compare
PS417_15975 -1.9 -2.0 glutamate carboxypeptidase compare
PS417_00085 -1.8 -2.5 16S rRNA methyltransferase compare
PS417_21360 -1.8 -1.1 termination factor Rho compare
PS417_23770 -1.7 -1.3 exodeoxyribonuclease V subunit alpha compare
PS417_03045 -1.7 -1.3 hypothetical protein compare
PS417_24500 -1.7 -2.3 DEAD/DEAH box helicase compare
PS417_08620 -1.6 -0.9 hypothetical protein compare
PS417_17215 -1.6 -2.9 peptidylprolyl isomerase compare
PS417_17645 -1.6 -1.7 RND transporter compare
PS417_01565 -1.6 -4.2 imidazole glycerol phosphate synthase compare
PS417_02475 -1.6 -2.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_13510 -1.6 -1.1 polyketide cyclase compare
PS417_24705 -1.6 -2.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_05365 -1.5 -1.5 FAD-binding protein compare
PS417_24895 -1.5 -1.3 hypothetical protein compare
PS417_20160 -1.5 -3.3 cysteine synthase compare
PS417_06530 -1.5 -2.3 membrane protein compare
PS417_15215 -1.5 -1.7 protein activator of alkane oxidation PraA compare
PS417_02270 -1.5 -2.7 carbamoyltransferase compare
PS417_00590 -1.4 -2.3 5S ribosomal RNA compare
PS417_21830 -1.4 -3.4 TetR family transcriptional regulator compare
PS417_08410 -1.4 -2.8 hypothetical protein compare
PS417_15285 -1.4 -1.1 type VI secretion protein compare
PS417_02695 -1.4 -1.3 protein hupE compare
PS417_08090 -1.4 -0.7 3-oxoacyl-ACP reductase compare
PS417_21065 -1.4 -1.7 3-methylitaconate isomerase compare
PS417_00510 -1.4 -0.8 membrane protein compare
PS417_20985 -1.4 -1.3 porin compare
PS417_27135 -1.4 -0.7 glutamine synthetase compare
PS417_23810 -1.4 -6.2 acetolactate synthase 3 catalytic subunit compare
PS417_02255 -1.4 -2.0 lipopolysaccharide kinase compare
PS417_23915 -1.3 -2.6 pantoate--beta-alanine ligase compare
PS417_03100 -1.3 -0.7 pilus assembly protein compare
PS417_19350 -1.3 -3.1 GTP cyclohydrolase compare
PS417_19665 -1.3 -2.3 flagellar motor protein MotD compare
PS417_27300 -1.3 -0.6 cell division protein ZapA compare
PS417_15005 -1.3 -1.8 hypothetical protein compare
PS417_08250 -1.3 -1.7 competence protein ComEA compare
PS417_00175 -1.3 -0.9 CigR compare
PS417_08225 -1.2 -3.3 acetolactate synthase compare
PS417_01920 -1.2 -0.8 ATP-dependent protease subunit HslV compare
PS417_05100 -1.2 -1.0 RNA polymerase sigma factor compare
PS417_02280 -1.2 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_12660 -1.2 -1.2 hypothetical protein compare
PS417_04440 -1.2 -1.8 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_05815 -1.2 -2.4 recombinase RecA compare
PS417_08200 -1.2 -1.9 hypothetical protein compare
PS417_02975 -1.2 -1.9 3-dehydroquinate dehydratase compare
PS417_18425 -1.2 -1.4 sporulation protein compare
PS417_04875 -1.2 -0.9 molybdenum cofactor biosynthesis protein MoaE compare
PS417_00650 -1.2 -0.6 LysR family transcriptional regulator compare
PS417_04275 -1.2 -6.7 hypothetical protein compare
PS417_19335 -1.2 -2.1 isochorismatase compare
PS417_26175 -1.2 -0.6 sarcosine oxidase subunit gamma compare
PS417_07305 -1.2 -1.6 3-beta hydroxysteroid dehydrogenase compare
PS417_22575 -1.1 -4.1 exonuclease I compare
PS417_15090 -1.1 -1.9 hypothetical protein compare
PS417_26755 -1.1 -1.6 nucleoside-triphosphate diphosphatase compare
PS417_15745 -1.1 -1.6 lipid carrier protein compare
PS417_05610 -1.1 -2.2 bacterioferritin compare
PS417_02555 -1.1 -6.9 exoribonuclease R compare
PS417_21125 -1.1 -3.1 phosphoadenosine phosphosulfate reductase compare
PS417_08025 -1.1 -0.9 acetylornithine aminotransferase compare
PS417_04535 -1.1 -1.8 lysine transporter LysE compare
PS417_05695 -1.1 -2.9 transcriptional regulator compare
PS417_23025 -1.1 -3.4 murein transglycosylase compare
PS417_08190 -1.1 -6.1 membrane protein compare
PS417_08135 -1.1 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19200 -1.1 -2.5 fumarate hydratase compare
PS417_17610 -1.1 -1.3 AsnC family transcriptional regulator compare
PS417_17240 -1.1 -1.7 trigger factor compare
PS417_09730 -1.0 -1.7 adenylylsulfate kinase compare
PS417_10870 -1.0 -2.0 GABA permease compare
PS417_05140 -1.0 -1.3 dipicolinate synthase compare
PS417_26850 -1.0 -0.5 twin-arginine translocation pathway signal protein compare
PS417_24775 -1.0 -2.3 dehydratase compare
PS417_21630 -1.0 -1.3 magnesium transporter compare
PS417_21425 -1.0 -1.2 4-amino-4-deoxychorismate lyase compare
PS417_22050 -1.0 -3.0 ribonuclease BN compare
PS417_01715 -1.0 -0.9 hypothetical protein compare
PS417_28350 -1.0 -3.8 fatty acid methyltransferase compare
PS417_26565 -1.0 -1.8 LysR family transcriptional regulator compare
PS417_15110 -1.0 -3.5 protein BatD compare
PS417_22700 -1.0 -2.1 RNA polymerase subunit sigma-24 compare
PS417_07275 -1.0 -1.3 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_04375 -1.0 -1.4 ABC transporter ATP-binding protein compare
PS417_21680 -1.0 -1.6 succinylglutamate desuccinylase compare
PS417_18710 -1.0 -3.7 hypothetical protein compare
PS417_20125 -1.0 -2.1 phosphoribosylglycinamide formyltransferase compare
PS417_04390 -1.0 -2.3 toluene tolerance protein compare
PS417_07120 -1.0 -2.1 RNA polymerase sigma-H factor compare
PS417_04170 -1.0 -4.3 stringent starvation protein A compare
PS417_06200 -1.0 -2.9 protein-PII uridylyltransferase compare
PS417_12390 -1.0 -1.0 hypothetical protein compare
PS417_19505 -0.9 -1.4 2,4-diaminobutyrate 4-aminotransferase compare
PS417_08230 -0.9 -1.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_19215 -0.9 -3.3 polyphosphate kinase compare
PS417_04220 -0.9 -0.9 4-carboxymuconolactone decarboxylase compare
PS417_27425 -0.9 -4.7 exopolyphosphatase compare
PS417_21510 -0.9 -1.1 histidine kinase compare
PS417_26365 -0.9 -1.6 EmrB/QacA subfamily drug resistance transporter compare
PS417_01570 -0.9 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_25315 -0.9 -2.1 membrane protein compare
PS417_20265 -0.9 -2.7 transcriptional regulator compare
PS417_18040 -0.9 -1.0 general secretion pathway protein GspN compare
PS417_23370 -0.9 -2.1 protoheme IX farnesyltransferase compare
PS417_09800 -0.9 -1.7 cytosine deaminase compare
PS417_19720 -0.9 -1.0 DNA-binding protein compare
PS417_27180 -0.9 -1.4 peroxidase compare
PS417_15160 -0.9 -2.0 hypothetical protein compare
PS417_11615 -0.9 -0.9 urea ABC transporter ATP-binding protein compare
PS417_18115 -0.9 -2.3 gamma-glutamyltransferase compare
PS417_22520 -0.9 -1.0 histidine kinase compare
PS417_02455 -0.9 -2.2 putative transporter, required for glycine utilization (from data) compare
PS417_22000 -0.9 -2.4 glutathione S-transferase compare
PS417_12855 -0.9 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23805 -0.8 -2.4 acetolactate synthase 3 regulatory subunit compare
PS417_25955 -0.8 -2.7 LysR family transcriptional regulator compare
PS417_23455 -0.8 -1.3 LrgA compare
PS417_24460 -0.8 -1.1 hypothetical protein compare
PS417_25390 -0.8 -2.6 MFS transporter compare
PS417_10015 -0.8 -0.6 hypothetical protein compare
PS417_20785 -0.8 -1.4 transcriptional regulator compare
PS417_01575 -0.8 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_03550 -0.8 -1.7 hypothetical protein compare
PS417_15105 -0.8 -3.1 membrane protein compare
PS417_23375 -0.8 -0.8 cytochrome C oxidase compare
PS417_05500 -0.8 -1.6 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_12940 -0.8 -2.0 sugar ABC transporter substrate-binding protein compare
PS417_24355 -0.8 -1.7 MFS transporter compare
PS417_28225 -0.8 -0.8 hypothetical protein compare
PS417_05510 -0.8 -2.6 alpha/beta hydrolase compare
PS417_00960 -0.8 -1.0 transcriptional regulator compare
PS417_08325 -0.8 -2.4 acyl-CoA thioesterase compare
PS417_06745 -0.8 -1.1 polysaccharide deacetylase compare
PS417_19190 -0.8 -1.7 BolA family transcriptional regulator compare
PS417_02575 -0.8 -2.1 membrane protein compare
PS417_23820 -0.8 -2.7 hypothetical protein compare
PS417_08185 -0.8 -2.2 glycosyl transferase compare
PS417_07945 -0.8 -1.4 hypothetical protein compare
PS417_03560 -0.8 -0.7 GTP-binding protein compare
PS417_02690 -0.8 -2.9 N-acylglucosamine 2-epimerase compare
PS417_02915 -0.8 -1.4 precorrin-3B C17-methyltransferase compare
PS417_21625 -0.8 -0.6 DNA-binding protein compare
PS417_00845 -0.8 -0.7 transcriptional regulator compare
PS417_28280 -0.8 -1.8 hypothetical protein compare
PS417_16510 -0.8 -1.7 Clp protease ClpX compare
PS417_05475 -0.8 -1.6 arginase compare
PS417_02910 -0.8 -3.1 precorrin-2 C20-methyltransferase compare
PS417_00355 -0.8 -1.4 metal ABC transporter permease compare
PS417_15095 -0.8 -1.3 hypothetical protein compare
PS417_06045 -0.8 -1.3 membrane protein compare
PS417_06140 -0.8 -1.2 cold-shock protein compare
PS417_13010 -0.8 -1.1 alpha/beta hydrolase compare
PS417_27155 -0.8 -0.9 aliphatic sulfonates transport ATP-binding subunit compare
PS417_12365 -0.8 -2.6 cobalt chelatase compare
PS417_12935 -0.8 -1.6 RNA polymerase sigma factor compare
PS417_23160 -0.8 -1.6 50S rRNA methyltransferase compare
PS417_15845 -0.8 -2.9 membrane protein compare
PS417_27595 -0.8 -1.1 recombinase XerC compare
PS417_02705 -0.8 -1.3 urease accessory protein UreF compare
PS417_01950 -0.8 -2.1 malate dehydrogenase compare
PS417_01750 -0.7 -1.4 histidine ammonia-lyase compare
PS417_00975 -0.7 -0.9 hypothetical protein compare
PS417_12535 -0.7 -0.8 nitrilase compare
PS417_13400 -0.7 -2.1 pirin compare
PS417_00160 -0.7 -1.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_05160 -0.7 -0.5 DNA polymerase III subunit chi compare
PS417_15225 -0.7 -1.2 alpha/beta hydrolase compare
PS417_14235 -0.7 -1.2 hypothetical protein compare
PS417_17400 -0.7 -2.0 TetR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in agar plate interaction experiments