Experiment set15IT014 for Pseudomonas simiae WCS417

Compare to:

Taped volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
PS417_23545 -7.4 -2.6 gamma-glutamyl kinase compare
PS417_02280 -6.5 -2.0 GlcNAc-PI de-N-acetylase compare
PS417_27865 -5.5 -3.1 LysR family transcriptional regulator compare
PS417_24745 -5.5 -4.7 gamma-glutamyl phosphate reductase compare
PS417_27795 -5.2 -0.9 orotate phosphoribosyltransferase compare
PS417_06375 -4.9 -0.9 deoxycytidine triphosphate deaminase compare
PS417_06095 -4.6 -1.2 energy transducer TonB compare
PS417_05975 -4.5 -0.8 chemotaxis protein CheW compare
PS417_00220 -4.3 -1.1 hypothetical protein compare
PS417_08245 -4.3 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22450 -4.2 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_27135 -4.2 -0.7 glutamine synthetase compare
PS417_22565 -4.2 -0.7 formyltetrahydrofolate deformylase compare
PS417_26730 -4.0 -1.0 pyrroline-5-carboxylate reductase compare
PS417_11705 -3.9 -5.7 cyclic peptide transporter compare
PS417_27155 -3.8 -1.3 aliphatic sulfonates transport ATP-binding subunit compare
PS417_20610 -3.8 -0.9 hypothetical protein compare
PS417_27870 -3.7 -3.5 ATP-dependent DNA helicase RecG compare
PS417_18310 -3.7 -1.1 hypothetical protein compare
PS417_13455 -3.7 -2.4 alkaline proteinase inhibitor compare
PS417_02880 -3.7 -0.9 copper chaperone compare
PS417_04385 -3.6 -2.8 organic solvent ABC transporter substrate-binding protein compare
PS417_08230 -3.6 -2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21630 -3.5 -1.6 magnesium transporter compare
PS417_01915 -3.4 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_07170 -3.1 -5.5 hypothetical protein compare
PS417_22445 -3.1 -4.7 ATP-dependent DNA helicase RuvB compare
PS417_05365 -3.1 -1.4 FAD-binding protein compare
PS417_01605 -2.9 -1.4 phosphoglycerate mutase compare
PS417_17215 -2.9 -2.9 peptidylprolyl isomerase compare
PS417_20985 -2.9 -1.2 porin compare
PS417_03385 -2.9 -1.0 flavin reductase compare
PS417_27195 -2.9 -1.0 N-acetylglutamate synthase compare
PS417_10145 -2.8 -2.4 hypothetical protein compare
PS417_04650 -2.7 -0.7 D-alanine--D-alanine ligase compare
PS417_08125 -2.6 -0.5 prephenate dehydratase compare
PS417_02225 -2.6 -2.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_08135 -2.6 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27520 -2.6 -4.0 uroporphyrin-III methyltransferase compare
PS417_09470 -2.6 -0.9 hypothetical protein compare
PS417_16490 -2.6 -1.1 cell division protein FtsK compare
PS417_03560 -2.6 -1.2 GTP-binding protein compare
PS417_12855 -2.6 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23770 -2.6 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_22210 -2.5 -2.0 AraC family transcriptional regulator compare
PS417_08155 -2.5 -1.2 integration host factor subunit beta compare
PS417_17240 -2.5 -2.6 trigger factor compare
PS417_27595 -2.5 -1.9 recombinase XerC compare
PS417_07615 -2.5 -4.0 TetR family transcriptional regulator compare
PS417_23775 -2.4 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_04390 -2.4 -2.7 toluene tolerance protein compare
PS417_26145 -2.4 -1.9 hypothetical protein compare
PS417_01735 -2.3 -3.1 ABC transporter permease compare
PS417_24525 -2.3 -1.9 nuclease compare
PS417_19285 -2.3 -1.4 ankyrin compare
PS417_16555 -2.3 -1.6 cupin compare
PS417_09160 -2.2 -2.0 GNAT family acetyltransferase compare
PS417_20160 -2.2 -3.6 cysteine synthase compare
PS417_26470 -2.2 -1.4 cytochrome C compare
PS417_00310 -2.1 -3.7 cysteine synthase compare
PS417_06710 -2.1 -1.2 beta-ketoadipyl CoA thiolase compare
PS417_06245 -2.1 -1.4 zinc metallopeptidase RseP compare
PS417_10040 -2.1 -0.7 MFS transporter compare
PS417_04380 -2.0 -0.6 ABC transporter permease compare
PS417_15745 -2.0 -1.6 lipid carrier protein compare
PS417_26370 -2.0 -1.9 RNA helicase compare
PS417_24615 -2.0 -0.9 hypothetical protein compare
PS417_04275 -2.0 -9.0 hypothetical protein compare
PS417_03100 -2.0 -0.7 pilus assembly protein compare
PS417_01580 -2.0 -1.3 imidazole glycerol phosphate synthase compare
PS417_14655 -2.0 -1.0 lysine transporter LysE compare
PS417_02720 -2.0 -0.8 TetR family transcriptional regulator compare
PS417_01435 -2.0 -0.8 hypothetical protein compare
PS417_07470 -2.0 -1.0 hypothetical protein compare
PS417_21625 -2.0 -0.8 DNA-binding protein compare
PS417_02560 -1.9 -1.3 23S rRNA methyltransferase compare
PS417_05160 -1.9 -0.8 DNA polymerase III subunit chi compare
PS417_08205 -1.9 -2.6 acetyltransferase compare
PS417_02415 -1.9 -2.3 phosphoserine phosphatase compare
PS417_07710 -1.9 -4.7 membrane protein compare
PS417_17830 -1.9 -1.5 4-hydroxyphenylacetate isomerase compare
PS417_08410 -1.9 -1.1 hypothetical protein compare
PS417_26530 -1.9 -0.9 hypothetical protein compare
PS417_22575 -1.9 -4.2 exonuclease I compare
PS417_00180 -1.9 -1.3 tryptophan synthase subunit alpha compare
PS417_21990 -1.8 -1.6 LacI family transcriptional regulator compare
PS417_20785 -1.8 -3.2 transcriptional regulator compare
PS417_01630 -1.8 -1.3 hypothetical protein compare
PS417_02270 -1.8 -1.9 carbamoyltransferase compare
PS417_27245 -1.8 -2.6 aminotransferase DegT compare
PS417_18545 -1.8 -2.2 cell division protein compare
PS417_03350 -1.8 -2.0 cytochrome C peroxidase compare
PS417_19350 -1.8 -2.4 GTP cyclohydrolase compare
PS417_27800 -1.8 -2.4 exodeoxyribonuclease III compare
PS417_09335 -1.8 -1.3 HAD family hydrolase compare
PS417_11055 -1.8 -1.5 AraC family transcriptional regulator compare
PS417_00375 -1.8 -2.1 membrane protein compare
PS417_09245 -1.8 -1.1 recombinase RdgC compare
PS417_09705 -1.8 -2.1 hypothetical protein compare
PS417_18130 -1.8 -1.9 ABC transporter substrate-binding protein compare
PS417_23380 -1.7 -1.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_00995 -1.7 -1.2 alpha/beta hydrolase compare
PS417_02370 -1.7 -1.2 ADP-ribose pyrophosphatase compare
PS417_00045 -1.7 -1.0 glycerol acyltransferase compare
PS417_10665 -1.7 -1.9 hypothetical protein compare
PS417_00325 -1.7 -3.1 hypothetical protein compare
PS417_24500 -1.7 -2.2 DEAD/DEAH box helicase compare
PS417_21915 -1.7 -1.6 LysR family transcriptional regulator compare
PS417_21850 -1.7 -1.0 LysR family transcriptional regulator compare
PS417_19675 -1.6 -2.2 chemotaxis protein CheY compare
PS417_24705 -1.6 -1.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_00670 -1.6 -2.0 RNA polymerase sigma factor compare
PS417_12735 -1.6 -1.4 peroxidase compare
PS417_06145 -1.6 -0.7 hypothetical protein compare
PS417_00755 -1.6 -0.4 biofilm PGA synthesis protein PgaD compare
PS417_11380 -1.6 -2.1 peptidylprolyl isomerase compare
PS417_24235 -1.6 -2.5 hypothetical protein compare
PS417_19955 -1.6 -1.2 hypothetical protein compare
PS417_04865 -1.6 -2.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_19655 -1.5 -2.2 chemotaxis protein CheW compare
PS417_23170 -1.5 -1.0 FeS assembly protein IscX compare
PS417_27110 -1.5 -2.6 spermidine/putrescine ABC transporter permease compare
PS417_23360 -1.5 -0.6 hypothetical protein compare
PS417_14980 -1.5 -0.7 universal stress protein UspA compare
PS417_23385 -1.5 -4.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_15030 -1.5 -0.8 short-chain dehydrogenase compare
PS417_15090 -1.5 -1.7 hypothetical protein compare
PS417_18915 -1.5 -1.6 hypothetical protein compare
PS417_07140 -1.5 -1.8 peptidase M48 compare
PS417_08190 -1.4 -6.2 membrane protein compare
PS417_23390 -1.4 -3.9 ubiquinol oxidase subunit II compare
PS417_04580 -1.4 -3.7 hypothetical protein compare
PS417_11570 -1.4 -2.3 ABC transporter permease compare
PS417_25155 -1.4 -0.8 hypothetical protein compare
PS417_06335 -1.4 -1.9 S-formylglutathione hydrolase compare
PS417_05735 -1.4 -2.7 tail fiber protein compare
PS417_07195 -1.4 -1.9 hypothetical protein compare
PS417_11825 -1.4 -1.7 transcriptional regulator compare
PS417_08990 -1.4 -2.6 ABC transporter substrate-binding protein compare
PS417_00550 -1.4 -0.6 hypothetical protein compare
PS417_18395 -1.4 -1.3 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_07985 -1.4 -0.9 AbrB family transcriptional regulator compare
PS417_15540 -1.4 -1.0 NUDIX hydrolase compare
PS417_27425 -1.4 -4.8 exopolyphosphatase compare
PS417_20635 -1.4 -0.7 ABC transporter ATP-binding protein compare
PS417_22690 -1.4 -1.7 phosphogluconate dehydratase compare
PS417_23375 -1.4 -0.9 cytochrome C oxidase compare
PS417_08185 -1.4 -2.7 glycosyl transferase compare
PS417_18250 -1.4 -1.9 chemotaxis protein compare
PS417_14045 -1.3 -2.1 alkyl hydroperoxide reductase compare
PS417_07305 -1.3 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_17350 -1.3 -2.0 copper resistance protein CopD compare
PS417_18905 -1.3 -1.6 acyl-CoA dehydrogenase compare
PS417_07815 -1.3 -1.8 hypothetical protein compare
PS417_02630 -1.3 -1.0 NAD synthetase compare
PS417_05830 -1.3 -2.4 hypothetical protein compare
PS417_09590 -1.3 -2.6 membrane protein compare
PS417_16720 -1.3 -0.8 membrane protein compare
PS417_17610 -1.3 -1.0 AsnC family transcriptional regulator compare
PS417_01285 -1.3 -1.0 haloacid dehalogenase compare
PS417_07010 -1.3 -1.8 pseudouridine synthase compare
PS417_03705 -1.3 -2.7 2-alkenal reductase compare
PS417_16750 -1.3 -1.1 ABC transporter ATP-binding protein compare
PS417_02045 -1.3 -2.2 3-oxoacyl-ACP synthase compare
PS417_24460 -1.3 -1.2 hypothetical protein compare
PS417_14810 -1.3 -2.3 Fosmidomycin resistance protein compare
PS417_16515 -1.2 -1.9 Clp protease ClpS compare
PS417_24710 -1.2 -3.2 lipoprotein compare
PS417_20620 -1.2 -2.6 glycosyl transferase family 2 compare
PS417_08045 -1.2 -1.1 uracil permease compare
PS417_07640 -1.2 -2.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_15935 -1.2 -1.0 Rrf2 family transcriptional regulator compare
PS417_01855 -1.2 -0.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_20140 -1.2 -1.4 nucleoprotein/polynucleotide-associated enzyme compare
PS417_03895 -1.2 -2.1 methyltransferase compare
PS417_08195 -1.2 -3.9 hypothetical protein compare
PS417_17160 -1.2 -1.5 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_26060 -1.2 -1.4 DNA polymerase III subunit epsilon compare
PS417_24530 -1.2 -2.6 ABC transporter substrate-binding protein compare
PS417_18420 -1.2 -1.5 deoxyribonuclease compare
PS417_15620 -1.2 -3.0 alpha/beta hydrolase compare
PS417_05695 -1.2 -2.3 transcriptional regulator compare
PS417_05500 -1.2 -1.6 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_12310 -1.2 -4.3 methionine synthase compare
PS417_19800 -1.2 -1.0 flagellar motor switch protein FliG compare
PS417_21420 -1.2 -6.4 aminodeoxychorismate lyase compare
PS417_00945 -1.2 -1.5 sulfate ABC transporter ATP-binding protein compare
PS417_23805 -1.2 -2.4 acetolactate synthase 3 regulatory subunit compare
PS417_21325 -1.2 -2.1 arabinose ABC transporter permease compare
PS417_11185 -1.2 -1.7 dimethylallyltransferase compare
PS417_12005 -1.2 -1.7 hypothetical protein compare
PS417_00455 -1.2 -0.9 hypothetical protein compare
PS417_26510 -1.2 -4.9 5,10-methylenetetrahydrofolate reductase compare
PS417_15725 -1.2 -1.7 nitrate/nitrite transporter NarK compare
PS417_17935 -1.2 -2.9 endoribonuclease L-PSP compare
PS417_01650 -1.2 -3.2 chorismate mutase compare
PS417_24570 -1.2 -1.6 AsnC family transcriptional regulator compare
PS417_23160 -1.2 -1.4 50S rRNA methyltransferase compare
PS417_13100 -1.2 -2.2 ABC transporter ATP-binding protein compare
PS417_14660 -1.2 -4.4 methyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in agar plate interaction control experiments