Experiment set15IT011 for Pseudomonas simiae WCS417

Compare to:

Taped volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PS417_23545 -6.0 -3.2 gamma-glutamyl kinase compare
PS417_27795 -5.2 -1.3 orotate phosphoribosyltransferase compare
PS417_27865 -4.5 -3.4 LysR family transcriptional regulator compare
PS417_22450 -4.2 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_24745 -4.1 -5.4 gamma-glutamyl phosphate reductase compare
PS417_02280 -3.9 -2.3 GlcNAc-PI de-N-acetylase compare
PS417_03455 -3.8 -1.8 type III secretion protein compare
PS417_11705 -3.6 -7.5 cyclic peptide transporter compare
PS417_23770 -3.6 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_21630 -3.5 -2.2 magnesium transporter compare
PS417_06375 -3.3 -1.1 deoxycytidine triphosphate deaminase compare
PS417_26730 -3.0 -1.4 pyrroline-5-carboxylate reductase compare
PS417_20985 -2.9 -1.7 porin compare
PS417_03385 -2.8 -1.3 flavin reductase compare
PS417_04650 -2.7 -0.9 D-alanine--D-alanine ligase compare
PS417_08125 -2.6 -0.6 prephenate dehydratase compare
PS417_23375 -2.5 -1.6 cytochrome C oxidase compare
PS417_01605 -2.4 -1.7 phosphoglycerate mutase compare
PS417_22520 -2.4 -2.0 histidine kinase compare
PS417_13455 -2.4 -4.0 alkaline proteinase inhibitor compare
PS417_23950 -2.4 -1.9 polynucleotide phosphorylase/polyadenylase compare
PS417_27800 -2.4 -2.3 exodeoxyribonuclease III compare
PS417_23580 -2.3 -1.5 peptidylprolyl isomerase compare
PS417_16195 -2.2 -1.1 AraC family transcriptional regulator compare
PS417_27870 -2.2 -4.3 ATP-dependent DNA helicase RecG compare
PS417_21425 -2.2 -1.6 4-amino-4-deoxychorismate lyase compare
PS417_01145 -2.2 -1.0 taurine transporter ATP-binding subunit compare
PS417_03560 -2.2 -1.4 GTP-binding protein compare
PS417_23995 -2.1 -0.9 preprotein translocase subunit SecG compare
PS417_00085 -2.0 -2.3 16S rRNA methyltransferase compare
PS417_15135 -2.0 -1.4 hypothetical protein compare
PS417_03260 -1.9 -1.4 5S ribosomal RNA compare
PS417_23025 -1.9 -4.7 murein transglycosylase compare
PS417_04915 -1.9 -1.7 glutamine ABC transporter ATP-binding protein compare
PS417_16715 -1.8 -1.5 DoxX family protein compare
PS417_22445 -1.8 -4.6 ATP-dependent DNA helicase RuvB compare
PS417_26990 -1.8 -0.8 RNA pyrophosphohydrolase compare
PS417_16490 -1.7 -1.4 cell division protein FtsK compare
PS417_08410 -1.7 -2.4 hypothetical protein compare
PS417_12455 -1.7 -2.9 hydrolase compare
PS417_22565 -1.7 -0.7 formyltetrahydrofolate deformylase compare
PS417_12855 -1.7 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07170 -1.7 -4.3 hypothetical protein compare
PS417_21360 -1.7 -1.0 termination factor Rho compare
PS417_19655 -1.7 -2.1 chemotaxis protein CheW compare
PS417_16555 -1.6 -1.5 cupin compare
PS417_05785 -1.6 -2.4 tail protein compare
PS417_02255 -1.6 -2.5 lipopolysaccharide kinase compare
PS417_23370 -1.6 -3.1 protoheme IX farnesyltransferase compare
PS417_06685 -1.6 -0.7 beta-ketoadipyl CoA thiolase compare
PS417_04585 -1.6 -1.3 hypothetical protein compare
PS417_07140 -1.6 -2.5 peptidase M48 compare
PS417_08135 -1.5 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24460 -1.5 -2.2 hypothetical protein compare
PS417_27195 -1.5 -1.0 N-acetylglutamate synthase compare
PS417_10095 -1.5 -1.5 hypothetical protein compare
PS417_26850 -1.5 -0.6 twin-arginine translocation pathway signal protein compare
PS417_17000 -1.4 -2.4 MerR family transcriptional regulator compare
PS417_12520 -1.4 -1.9 hypothetical protein compare
PS417_18545 -1.4 -2.8 cell division protein compare
PS417_04275 -1.4 -8.5 hypothetical protein compare
PS417_04365 -1.4 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01580 -1.4 -1.4 imidazole glycerol phosphate synthase compare
PS417_12660 -1.4 -1.5 hypothetical protein compare
PS417_14655 -1.4 -1.0 lysine transporter LysE compare
PS417_03380 -1.4 -1.1 hypothetical protein compare
PS417_13855 -1.4 -0.8 acetyl-CoA acetyltransferase compare
PS417_05695 -1.4 -3.2 transcriptional regulator compare
PS417_19350 -1.3 -3.1 GTP cyclohydrolase compare
PS417_20610 -1.3 -1.1 hypothetical protein compare
PS417_18105 -1.3 -1.1 iron-dicitrate transporter substrate-binding subunit compare
PS417_15100 -1.3 -1.7 BatB protein compare
PS417_13510 -1.3 -0.9 polyketide cyclase compare
PS417_02070 -1.3 -0.8 membrane protein compare
PS417_06530 -1.3 -1.6 membrane protein compare
PS417_19510 -1.3 -3.3 N-acetylmuramoyl-L-alanine amidase compare
PS417_26370 -1.2 -2.9 RNA helicase compare
PS417_19955 -1.2 -1.5 hypothetical protein compare
PS417_13175 -1.2 -0.9 iron transporter compare
PS417_23390 -1.2 -4.4 ubiquinol oxidase subunit II compare
PS417_05815 -1.2 -3.0 recombinase RecA compare
PS417_24500 -1.2 -3.1 DEAD/DEAH box helicase compare
PS417_27910 -1.2 -1.7 PppA compare
PS417_01565 -1.2 -4.1 imidazole glycerol phosphate synthase compare
PS417_22575 -1.2 -4.7 exonuclease I compare
PS417_27585 -1.2 -1.5 diaminopimelate epimerase compare
PS417_27425 -1.2 -4.8 exopolyphosphatase compare
PS417_02975 -1.2 -2.0 3-dehydroquinate dehydratase compare
PS417_20080 -1.2 -1.5 peptidase P60 compare
PS417_23455 -1.2 -1.7 LrgA compare
PS417_23160 -1.2 -2.1 50S rRNA methyltransferase compare
PS417_21760 -1.2 -1.2 hypothetical protein compare
PS417_00510 -1.2 -0.8 membrane protein compare
PS417_11715 -1.2 -2.8 chromophore maturation protein PvdO compare
PS417_21655 -1.2 -0.9 aspartate kinase compare
PS417_02880 -1.2 -1.2 copper chaperone compare
PS417_15095 -1.1 -1.9 hypothetical protein compare
PS417_05535 -1.1 -1.1 Fis family transcriptional regulator compare
PS417_13945 -1.1 -1.5 GNAT family acetyltransferase compare
PS417_07710 -1.1 -3.5 membrane protein compare
PS417_15285 -1.1 -0.9 type VI secretion protein compare
PS417_23915 -1.1 -2.2 pantoate--beta-alanine ligase compare
PS417_27040 -1.1 -1.1 3-phosphoglycerate dehydrogenase compare
PS417_07120 -1.1 -3.5 RNA polymerase sigma-H factor compare
PS417_24800 -1.1 -3.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_17805 -1.1 -1.7 microcin B17 processing protein McbC compare
PS417_19755 -1.1 -1.3 flagellar motor switch protein FliM compare
PS417_11585 -1.1 -1.8 LuxR family transcriptional regulator compare
PS417_05985 -1.1 -1.6 chemotaxis protein CheY compare
PS417_11055 -1.1 -2.1 AraC family transcriptional regulator compare
PS417_03965 -1.1 -3.2 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_07010 -1.1 -2.1 pseudouridine synthase compare
PS417_27595 -1.1 -1.5 recombinase XerC compare
PS417_03815 -1.1 -2.5 DNA transporter compare
PS417_02270 -1.1 -2.6 carbamoyltransferase compare
PS417_18740 -1.1 -2.0 acetyltransferase compare
PS417_13305 -1.1 -0.9 hypothetical protein compare
PS417_17240 -1.1 -3.4 trigger factor compare
PS417_23205 -1.1 -2.2 transcriptional regulator compare
PS417_21430 -1.1 -1.2 3-oxoacyl-ACP synthase compare
PS417_16680 -1.1 -1.4 MFS transporter compare
PS417_11555 -1.1 -3.4 (2Fe-2S)-binding protein compare
PS417_01915 -1.0 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02225 -1.0 -1.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_17830 -1.0 -2.3 4-hydroxyphenylacetate isomerase compare
PS417_00590 -1.0 -1.3 5S ribosomal RNA compare
PS417_12740 -1.0 -2.4 secretion protein HlyD compare
PS417_28315 -1.0 -1.8 zinc ABC transporter permease compare
PS417_18540 -1.0 -2.1 colicin V production CvpA compare
PS417_12220 -1.0 -2.3 hydroxyacylglutathione hydrolase compare
PS417_01570 -1.0 -1.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08680 -1.0 -1.1 flagellar biosynthesis protein FlhB compare
PS417_21125 -1.0 -3.2 phosphoadenosine phosphosulfate reductase compare
PS417_26260 -1.0 -0.8 hypothetical protein compare
PS417_18425 -1.0 -1.2 sporulation protein compare
PS417_26040 -1.0 -2.7 malate synthase compare
PS417_22840 -1.0 -1.1 tRNA-Met compare
PS417_23625 -1.0 -1.7 LysR family transcriptional regulator compare
PS417_02045 -1.0 -1.8 3-oxoacyl-ACP synthase compare
PS417_21275 -1.0 -5.1 GntR family transcriptional regulator compare
PS417_17215 -1.0 -1.9 peptidylprolyl isomerase compare
PS417_15110 -1.0 -3.3 protein BatD compare
PS417_08930 -1.0 -1.7 hypothetical protein compare
PS417_01435 -1.0 -0.7 hypothetical protein compare
PS417_00180 -1.0 -1.6 tryptophan synthase subunit alpha compare
PS417_11825 -1.0 -1.7 transcriptional regulator compare
PS417_10680 -1.0 -1.8 enoyl-CoA hydratase compare
PS417_26805 -1.0 -0.7 cell division protein FtsE compare
PS417_24620 -1.0 -1.2 hypothetical protein compare
PS417_00870 -1.0 -1.7 hypothetical protein compare
PS417_06745 -1.0 -1.4 polysaccharide deacetylase compare
PS417_17925 -1.0 -1.0 acyl-CoA dehydrogenase compare
PS417_23810 -1.0 -5.1 acetolactate synthase 3 catalytic subunit compare
PS417_01160 -0.9 -1.8 hypothetical protein compare
PS417_13195 -0.9 -2.0 RND transporter MFP subunit compare
PS417_10055 -0.9 -1.3 hypothetical protein compare
PS417_07565 -0.9 -0.9 hypothetical protein compare
PS417_06945 -0.9 -0.6 membrane protein compare
PS417_15990 -0.9 -2.4 GntR family transcriptional regulator compare
PS417_11425 -0.9 -2.6 transcriptional regulator compare
PS417_18490 -0.9 -2.4 hypothetical protein compare
PS417_11535 -0.9 -1.5 nicotinate phosphoribosyltransferase compare
PS417_03685 -0.9 -1.6 FAD-dependent oxidoreductase compare
PS417_02415 -0.9 -2.2 phosphoserine phosphatase compare
PS417_20855 -0.9 -0.8 hypothetical protein compare
PS417_06655 -0.9 -3.7 class V aminotransferase compare
PS417_23805 -0.9 -2.0 acetolactate synthase 3 regulatory subunit compare
PS417_09440 -0.9 -1.1 MerR family transcriptional regulator compare
PS417_07945 -0.9 -1.4 hypothetical protein compare
PS417_00730 -0.9 -4.0 NADH:ubiquinone oxidoreductase subunit N compare
PS417_01855 -0.9 -1.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_10695 -0.9 -3.1 decarboxylase compare
PS417_03475 -0.9 -1.7 type III secretion protein compare
PS417_15085 -0.9 -2.5 ATPase AAA compare
PS417_15760 -0.9 -1.9 molybdenum cofactor biosynthesis protein MoaA compare
PS417_08155 -0.9 -0.8 integration host factor subunit beta compare
PS417_22945 -0.9 -1.3 phosphoribosylglycinamide formyltransferase compare
PS417_21255 -0.9 -1.6 hypothetical protein compare
PS417_25390 -0.9 -2.9 MFS transporter compare
PS417_00045 -0.9 -0.9 glycerol acyltransferase compare
PS417_27445 -0.9 -3.1 membrane protein compare
PS417_09235 -0.9 -0.6 molecular chaperone compare
PS417_05840 -0.9 -1.5 LuxR family transcriptional regulator compare
PS417_11950 -0.9 -0.9 hypothetical protein compare
PS417_21480 -0.9 -0.8 23S rRNA pseudouridylate synthase compare
PS417_10490 -0.9 -1.8 delta-aminolevulinic acid dehydratase compare
PS417_25380 -0.9 -1.7 hypothetical protein compare
PS417_03515 -0.9 -1.1 type III secretion protein compare
PS417_04170 -0.9 -2.6 stringent starvation protein A compare
PS417_07985 -0.9 -0.9 AbrB family transcriptional regulator compare
PS417_01270 -0.9 -1.0 iron ABC transporter substrate-binding protein compare
PS417_02705 -0.9 -1.4 urease accessory protein UreF compare
PS417_14540 -0.9 -0.8 cytochrome C oxidase subunit III compare
PS417_27085 -0.9 -1.6 AraC family transcriptional regulator compare
PS417_02950 -0.9 -1.8 tRNA-dihydrouridine synthase B compare
PS417_01140 -0.9 -1.8 taurine ABC transporter permease compare
PS417_14915 -0.8 -1.8 host specificity protein compare
PS417_13990 -0.8 -1.0 LysR family transcriptional regulator compare
PS417_11405 -0.8 -1.9 precorrin 6A synthase compare
PS417_11390 -0.8 -1.5 LysR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in agar plate interaction experiments