Experiment set15IT010 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PS417_27865 -7.7 -2.6 LysR family transcriptional regulator compare
PS417_24745 -6.7 -2.5 gamma-glutamyl phosphate reductase compare
PS417_13010 -6.2 -1.8 alpha/beta hydrolase compare
PS417_23545 -6.0 -2.5 gamma-glutamyl kinase compare
PS417_15885 -5.8 -1.7 GCN5 family acetyltransferase compare
PS417_17645 -5.6 -1.7 RND transporter compare
PS417_02475 -5.6 -2.3 N-acetylmuramoyl-L-alanine amidase compare
PS417_06245 -5.4 -1.8 zinc metallopeptidase RseP compare
PS417_21625 -5.3 -0.9 DNA-binding protein compare
PS417_27795 -5.2 -0.9 orotate phosphoribosyltransferase compare
PS417_00550 -5.1 -0.9 hypothetical protein compare
PS417_09235 -4.9 -0.8 molecular chaperone compare
PS417_08155 -4.8 -1.4 integration host factor subunit beta compare
PS417_11705 -4.8 -7.5 cyclic peptide transporter compare
PS417_06600 -4.7 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_02560 -4.5 -1.5 23S rRNA methyltransferase compare
PS417_03045 -4.5 -1.1 hypothetical protein compare
PS417_05975 -4.4 -0.8 chemotaxis protein CheW compare
PS417_06685 -4.4 -0.7 beta-ketoadipyl CoA thiolase compare
PS417_26420 -4.2 -1.0 hypothetical protein compare
PS417_22450 -4.2 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_22565 -4.1 -0.7 formyltetrahydrofolate deformylase compare
PS417_22060 -4.1 -1.0 hypothetical protein compare
PS417_27870 -4.1 -3.9 ATP-dependent DNA helicase RecG compare
PS417_26730 -4.0 -1.0 pyrroline-5-carboxylate reductase compare
PS417_24370 -4.0 -0.7 (2Fe-2S)-binding protein compare
PS417_13305 -3.9 -0.9 hypothetical protein compare
PS417_04585 -3.9 -1.1 hypothetical protein compare
PS417_11485 -3.9 -1.5 AraC family transcriptional regulator compare
PS417_27195 -3.7 -0.9 N-acetylglutamate synthase compare
PS417_26900 -3.6 -1.7 L-cystine transporter tcyP compare
PS417_18425 -3.6 -1.4 sporulation protein compare
PS417_18310 -3.5 -1.0 hypothetical protein compare
PS417_22445 -3.5 -3.9 ATP-dependent DNA helicase RuvB compare
PS417_04375 -3.5 -1.7 ABC transporter ATP-binding protein compare
PS417_01915 -3.4 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_26815 -3.3 -2.2 peptidase M16 compare
PS417_05365 -3.3 -1.6 FAD-binding protein compare
PS417_24500 -3.2 -2.9 DEAD/DEAH box helicase compare
PS417_17780 -3.1 -0.7 Ais protein compare
PS417_05815 -3.0 -4.1 recombinase RecA compare
PS417_02280 -2.9 -1.3 GlcNAc-PI de-N-acetylase compare
PS417_23315 -2.9 -0.9 transcriptional regulator compare
PS417_12280 -2.9 -1.5 MerR family transcriptional regulator compare
PS417_26990 -2.9 -0.7 RNA pyrophosphohydrolase compare
PS417_20985 -2.8 -1.2 porin compare
PS417_18055 -2.8 -0.9 general secretion pathway protein GspK compare
PS417_06100 -2.8 -1.4 SAM-dependent methyltransferase compare
PS417_01560 -2.7 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_14455 -2.7 -1.9 polyketide cyclase compare
PS417_19350 -2.7 -3.7 GTP cyclohydrolase compare
PS417_03560 -2.7 -1.2 GTP-binding protein compare
PS417_22050 -2.7 -2.9 ribonuclease BN compare
PS417_04650 -2.6 -0.6 D-alanine--D-alanine ligase compare
PS417_13620 -2.6 -1.1 thermostable hemolysin compare
PS417_01920 -2.6 -0.6 ATP-dependent protease subunit HslV compare
PS417_08125 -2.6 -0.4 prephenate dehydratase compare
PS417_27800 -2.5 -1.6 exodeoxyribonuclease III compare
PS417_27640 -2.5 -1.0 TetR family transcriptional regulator compare
PS417_09290 -2.4 -2.9 catalase compare
PS417_01580 -2.4 -1.3 imidazole glycerol phosphate synthase compare
PS417_11585 -2.4 -2.0 LuxR family transcriptional regulator compare
PS417_27520 -2.4 -2.8 uroporphyrin-III methyltransferase compare
PS417_21630 -2.4 -1.7 magnesium transporter compare
PS417_02745 -2.3 -1.5 FMN-dependent NADH-azoreductase compare
PS417_12110 -2.3 -1.3 ATP-binding protein compare
PS417_07170 -2.2 -4.5 hypothetical protein compare
PS417_21695 -2.2 -2.5 succinylglutamate-semialdehyde dehydrogenase compare
PS417_13510 -2.1 -0.9 polyketide cyclase compare
PS417_14315 -2.1 -2.2 2,5-dioxovalerate dehydrogenase compare
PS417_22520 -2.0 -1.3 histidine kinase compare
PS417_06895 -2.0 -2.4 DNA-binding protein compare
PS417_02975 -2.0 -2.6 3-dehydroquinate dehydratase compare
PS417_15215 -2.0 -1.0 protein activator of alkane oxidation PraA compare
PS417_10405 -2.0 -0.6 filamentous hemagglutinin compare
PS417_25315 -1.9 -3.6 membrane protein compare
PS417_18420 -1.9 -1.9 deoxyribonuclease compare
PS417_22610 -1.9 -3.9 pilus assembly protein PilZ compare
PS417_03815 -1.9 -1.8 DNA transporter compare
PS417_02700 -1.9 -2.3 urease accessory protein UreG compare
PS417_24085 -1.9 -1.2 protein RnfH compare
PS417_02705 -1.9 -1.4 urease accessory protein UreF compare
PS417_13735 -1.9 -0.9 hypothetical protein compare
PS417_07710 -1.8 -3.5 membrane protein compare
PS417_22000 -1.8 -3.3 glutathione S-transferase compare
PS417_20520 -1.8 -2.7 3-phosphoglycerate kinase compare
PS417_26635 -1.8 -2.9 hypothetical protein compare
PS417_27815 -1.8 -1.0 hypothetical protein compare
PS417_06680 -1.8 -4.6 nuclease PIN compare
PS417_18600 -1.8 -2.1 isopropylmalate isomerase compare
PS417_05830 -1.8 -1.8 hypothetical protein compare
PS417_16005 -1.7 -2.3 ATPase compare
PS417_17350 -1.7 -1.2 copper resistance protein CopD compare
PS417_14810 -1.7 -1.6 Fosmidomycin resistance protein compare
PS417_27515 -1.7 -2.8 heme biosynthesis protein HemY compare
PS417_02415 -1.7 -2.0 phosphoserine phosphatase compare
PS417_10245 -1.7 -1.0 hypothetical protein compare
PS417_03145 -1.7 -1.8 acetyl-CoA acetyltransferase compare
PS417_13455 -1.7 -1.6 alkaline proteinase inhibitor compare
PS417_23725 -1.7 -1.8 methylmalonate-semialdehyde dehydrogenase compare
PS417_08135 -1.7 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06375 -1.7 -0.6 deoxycytidine triphosphate deaminase compare
PS417_24355 -1.7 -1.7 MFS transporter compare
PS417_17405 -1.7 -1.3 AraC family transcriptional regulator compare
PS417_10985 -1.7 -0.6 NADH:flavin oxidoreductase compare
PS417_05610 -1.7 -2.7 bacterioferritin compare
PS417_20610 -1.7 -0.9 hypothetical protein compare
PS417_15790 -1.7 -2.1 hypothetical protein compare
PS417_12455 -1.6 -1.9 hydrolase compare
PS417_14555 -1.6 -2.0 AsnC family transcriptional regulator compare
PS417_17925 -1.6 -1.4 acyl-CoA dehydrogenase compare
PS417_01605 -1.6 -1.0 phosphoglycerate mutase compare
PS417_18150 -1.6 -2.4 chemotaxis protein CheY compare
PS417_09460 -1.6 -1.5 alkanesulfonate monooxygenase compare
PS417_07565 -1.6 -1.7 hypothetical protein compare
PS417_23775 -1.6 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_05235 -1.6 -1.2 peptidase inhibitor I42 compare
PS417_28020 -1.6 -1.2 chorismate--pyruvate lyase compare
PS417_18540 -1.6 -1.4 colicin V production CvpA compare
PS417_11945 -1.6 -1.5 hypothetical protein compare
PS417_11830 -1.6 -1.4 membrane protein compare
PS417_14325 -1.6 -2.2 AraC family transcriptional regulator compare
PS417_26725 -1.5 -1.5 hypothetical protein compare
PS417_18395 -1.5 -1.3 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_27245 -1.5 -1.9 aminotransferase DegT compare
PS417_06145 -1.5 -0.7 hypothetical protein compare
PS417_04385 -1.5 -2.4 organic solvent ABC transporter substrate-binding protein compare
PS417_19335 -1.5 -1.2 isochorismatase compare
PS417_19195 -1.5 -1.9 hypothetical protein compare
PS417_22895 -1.5 -2.0 tyrosine recombinase XerD compare
PS417_08320 -1.5 -1.8 metal-chelation protein CHAD compare
PS417_11885 -1.5 -2.3 Inositol transport system sugar-binding protein (from data) compare
PS417_04800 -1.5 -1.2 alginate O-acetyltransferase compare
PS417_03475 -1.5 -1.8 type III secretion protein compare
PS417_19285 -1.5 -0.6 ankyrin compare
PS417_01715 -1.5 -0.8 hypothetical protein compare
PS417_08365 -1.5 -0.6 hypothetical protein compare
PS417_07870 -1.5 -1.0 hypothetical protein compare
PS417_05165 -1.5 -2.4 cytosol aminopeptidase compare
PS417_17415 -1.5 -1.9 histidine kinase compare
PS417_04705 -1.5 -1.1 hypothetical protein compare
PS417_02720 -1.5 -0.6 TetR family transcriptional regulator compare
PS417_11950 -1.5 -0.9 hypothetical protein compare
PS417_20340 -1.5 -1.3 hypothetical protein compare
PS417_26230 -1.4 -2.4 electron transfer flavoprotein subunit alpha compare
PS417_16565 -1.4 -2.4 secretin compare
PS417_10580 -1.4 -2.8 glutamine synthetase compare
PS417_28275 -1.4 -1.6 cobalamin biosynthesis protein CobW compare
PS417_08200 -1.4 -1.5 hypothetical protein compare
PS417_08090 -1.4 -0.5 3-oxoacyl-ACP reductase compare
PS417_28230 -1.4 -1.5 transcriptional regulator compare
PS417_21360 -1.4 -0.6 termination factor Rho compare
PS417_11715 -1.4 -1.8 chromophore maturation protein PvdO compare
PS417_02160 -1.4 -0.7 hypothetical protein compare
PS417_07410 -1.4 -1.2 hypothetical protein compare
PS417_26370 -1.4 -2.1 RNA helicase compare
PS417_27490 -1.4 -1.1 hypothetical protein compare
PS417_14400 -1.4 -1.1 hypothetical protein compare
PS417_04170 -1.4 -3.2 stringent starvation protein A compare
PS417_28525 -1.3 -3.0 RNA polymerase sigma factor compare
PS417_17240 -1.3 -1.5 trigger factor compare
PS417_18455 -1.3 -1.1 hypothetical protein compare
PS417_25220 -1.3 -2.1 iron-hydroxamate ABC transporter substrate-binding protein compare
PS417_27910 -1.3 -2.3 PppA compare
PS417_07140 -1.3 -1.7 peptidase M48 compare
PS417_26760 -1.3 -2.5 oxidase compare
PS417_05985 -1.3 -1.4 chemotaxis protein CheY compare
PS417_17400 -1.3 -2.3 TetR family transcriptional regulator compare
PS417_16180 -1.3 -2.1 MFS transporter compare
PS417_15705 -1.3 -1.2 nitrate reductase compare
PS417_07620 -1.3 -1.2 beta-hexosaminidase compare
PS417_07175 -1.3 -2.4 beta-lactamase compare
PS417_14140 -1.3 -1.3 membrane protein compare
PS417_01825 -1.3 -1.3 chemotaxis protein compare
PS417_00175 -1.3 -0.7 CigR compare
PS417_09600 -1.3 -2.3 glycosyl transferase family 1 compare
PS417_22120 -1.3 -2.2 aldose epimerase compare
PS417_23810 -1.3 -4.9 acetolactate synthase 3 catalytic subunit compare
PS417_06710 -1.3 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_27035 -1.3 -1.8 FAD-linked oxidase compare
PS417_27350 -1.2 -3.6 calcium transporter ChaC compare
PS417_15030 -1.2 -0.7 short-chain dehydrogenase compare
PS417_16000 -1.2 -1.1 chemotaxis protein CheY compare
PS417_08045 -1.2 -1.2 uracil permease compare
PS417_06395 -1.2 -1.3 amino acid transporter compare
PS417_21220 -1.2 -2.3 acetyl-CoA acetyltransferase compare
PS417_28170 -1.2 -1.9 transcriptional regulator compare
PS417_03550 -1.2 -1.5 hypothetical protein compare
PS417_14585 -1.2 -2.9 MFS transporter compare
PS417_18435 -1.2 -1.3 hypothetical protein compare
PS417_13760 -1.2 -2.1 transcriptional regulator compare
PS417_16810 -1.2 -1.3 acyl-CoA dehydrogenase compare
PS417_21140 -1.2 -1.4 LysR family transcriptional regulator compare
PS417_11555 -1.2 -1.5 (2Fe-2S)-binding protein compare
PS417_21125 -1.2 -2.7 phosphoadenosine phosphosulfate reductase compare
PS417_20795 -1.2 -1.5 acyl-CoA dehydrogenase compare
PS417_27675 -1.2 -1.0 xanthine phosphoribosyltransferase compare
PS417_16855 -1.2 -0.9 cation:proton antiporter compare
PS417_04990 -1.2 -2.3 GIY-YIG nuclease compare
PS417_05880 -1.2 -2.2 ribosomal protein S12 methylthiotransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in agar plate interaction experiments