Experiment set15IT009 for Pseudomonas simiae WCS417

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
PS417_02280 -6.6 -3.2 GlcNAc-PI de-N-acetylase compare
PS417_21625 -5.3 -1.5 DNA-binding protein compare
PS417_24745 -5.2 -5.8 gamma-glutamyl phosphate reductase compare
PS417_23545 -5.2 -2.9 gamma-glutamyl kinase compare
PS417_11705 -5.0 -10.9 cyclic peptide transporter compare
PS417_06375 -4.9 -1.4 deoxycytidine triphosphate deaminase compare
PS417_22565 -4.1 -1.2 formyltetrahydrofolate deformylase compare
PS417_26730 -4.0 -1.6 pyrroline-5-carboxylate reductase compare
PS417_13455 -3.7 -4.6 alkaline proteinase inhibitor compare
PS417_18310 -3.6 -1.7 hypothetical protein compare
PS417_23770 -3.6 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_27795 -3.6 -1.4 orotate phosphoribosyltransferase compare
PS417_27865 -3.5 -3.7 LysR family transcriptional regulator compare
PS417_27870 -3.2 -6.2 ATP-dependent DNA helicase RecG compare
PS417_22445 -3.1 -6.4 ATP-dependent DNA helicase RuvB compare
PS417_20985 -2.9 -1.9 porin compare
PS417_26990 -2.9 -1.1 RNA pyrophosphohydrolase compare
PS417_07140 -2.8 -3.6 peptidase M48 compare
PS417_27195 -2.8 -1.6 N-acetylglutamate synthase compare
PS417_08135 -2.8 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01560 -2.8 -3.6 imidazoleglycerol-phosphate dehydratase compare
PS417_27585 -2.7 -2.7 diaminopimelate epimerase compare
PS417_08125 -2.5 -0.7 prephenate dehydratase compare
PS417_17645 -2.5 -2.2 RND transporter compare
PS417_21630 -2.5 -2.5 magnesium transporter compare
PS417_27135 -2.5 -1.0 glutamine synthetase compare
PS417_04375 -2.5 -2.5 ABC transporter ATP-binding protein compare
PS417_27245 -2.4 -4.5 aminotransferase DegT compare
PS417_06600 -2.3 -1.1 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_16490 -2.2 -1.7 cell division protein FtsK compare
PS417_12855 -2.2 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03260 -2.1 -1.6 5S ribosomal RNA compare
PS417_03455 -2.1 -1.4 type III secretion protein compare
PS417_07170 -2.1 -5.0 hypothetical protein compare
PS417_23950 -2.0 -2.7 polynucleotide phosphorylase/polyadenylase compare
PS417_15100 -2.0 -1.8 BatB protein compare
PS417_19350 -2.0 -3.7 GTP cyclohydrolase compare
PS417_02270 -2.0 -2.6 carbamoyltransferase compare
PS417_07620 -2.0 -2.3 beta-hexosaminidase compare
PS417_15135 -1.9 -1.5 hypothetical protein compare
PS417_04385 -1.8 -4.0 organic solvent ABC transporter substrate-binding protein compare
PS417_01565 -1.8 -5.7 imidazole glycerol phosphate synthase compare
PS417_03560 -1.8 -1.5 GTP-binding protein compare
PS417_27800 -1.8 -2.4 exodeoxyribonuclease III compare
PS417_06245 -1.8 -1.5 zinc metallopeptidase RseP compare
PS417_19755 -1.7 -1.8 flagellar motor switch protein FliM compare
PS417_01855 -1.7 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_19675 -1.7 -4.2 chemotaxis protein CheY compare
PS417_20785 -1.7 -2.6 transcriptional regulator compare
PS417_14940 -1.7 -1.6 LysR family transcriptional regulator compare
PS417_21210 -1.7 -2.4 amidotransferase compare
PS417_02975 -1.7 -2.6 3-dehydroquinate dehydratase compare
PS417_22520 -1.6 -1.9 histidine kinase compare
PS417_23995 -1.6 -0.9 preprotein translocase subunit SecG compare
PS417_08410 -1.6 -1.7 hypothetical protein compare
PS417_09590 -1.6 -4.1 membrane protein compare
PS417_06945 -1.5 -1.3 membrane protein compare
PS417_19955 -1.5 -1.8 hypothetical protein compare
PS417_08155 -1.5 -1.0 integration host factor subunit beta compare
PS417_21125 -1.5 -4.4 phosphoadenosine phosphosulfate reductase compare
PS417_24500 -1.5 -3.3 DEAD/DEAH box helicase compare
PS417_23810 -1.5 -7.9 acetolactate synthase 3 catalytic subunit compare
PS417_06680 -1.5 -5.2 nuclease PIN compare
PS417_23375 -1.5 -1.4 cytochrome C oxidase compare
PS417_27040 -1.5 -1.6 3-phosphoglycerate dehydrogenase compare
PS417_04365 -1.5 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_09245 -1.4 -1.2 recombinase RdgC compare
PS417_04475 -1.4 -3.7 hypothetical protein compare
PS417_05985 -1.4 -1.9 chemotaxis protein CheY compare
PS417_23915 -1.4 -3.5 pantoate--beta-alanine ligase compare
PS417_04275 -1.4 -9.0 hypothetical protein compare
PS417_02560 -1.4 -1.6 23S rRNA methyltransferase compare
PS417_01605 -1.4 -1.3 phosphoglycerate mutase compare
PS417_19705 -1.4 -2.1 flagellar biosynthesis regulator FlhF compare
PS417_15465 -1.4 -2.8 carboxynorspermidine decarboxylase compare
PS417_22450 -1.4 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_03145 -1.4 -2.1 acetyl-CoA acetyltransferase compare
PS417_01575 -1.3 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_24580 -1.3 -3.3 pseudouridine synthase compare
PS417_24460 -1.3 -1.4 hypothetical protein compare
PS417_00370 -1.3 -1.0 hypothetical protein compare
PS417_22810 -1.3 -1.5 DNA base-flipping protein YbaZ compare
PS417_00355 -1.3 -1.4 metal ABC transporter permease compare
PS417_23025 -1.3 -4.1 murein transglycosylase compare
PS417_00510 -1.3 -1.1 membrane protein compare
PS417_04305 -1.3 -1.2 aspartate ammonia-lyase compare
PS417_27425 -1.3 -5.4 exopolyphosphatase compare
PS417_00220 -1.3 -1.5 hypothetical protein compare
PS417_11175 -1.3 -1.8 AraC family transcriptional regulator compare
PS417_04875 -1.3 -0.8 molybdenum cofactor biosynthesis protein MoaE compare
PS417_22575 -1.3 -5.4 exonuclease I compare
PS417_06745 -1.3 -1.9 polysaccharide deacetylase compare
PS417_17125 -1.2 -2.4 transcriptional regulator compare
PS417_19190 -1.2 -2.7 BolA family transcriptional regulator compare
PS417_04585 -1.2 -1.3 hypothetical protein compare
PS417_08190 -1.2 -8.5 membrane protein compare
PS417_26420 -1.2 -0.8 hypothetical protein compare
PS417_01510 -1.2 -1.8 hypothetical protein compare
PS417_23160 -1.2 -1.5 50S rRNA methyltransferase compare
PS417_08245 -1.2 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_20635 -1.2 -0.9 ABC transporter ATP-binding protein compare
PS417_21575 -1.2 -3.8 chemotaxis protein compare
PS417_01620 -1.2 -1.8 preprotein translocase subunit SecB compare
PS417_16555 -1.2 -1.1 cupin compare
PS417_06835 -1.2 -2.0 phospholipase compare
PS417_22895 -1.2 -4.5 tyrosine recombinase XerD compare
PS417_23580 -1.1 -1.2 peptidylprolyl isomerase compare
PS417_07615 -1.1 -3.6 TetR family transcriptional regulator compare
PS417_07420 -1.1 -1.8 restriction endonuclease compare
PS417_04290 -1.1 -2.7 hypothetical protein compare
PS417_03460 -1.1 -2.3 type III secretion protein HrpI compare
PS417_18425 -1.1 -1.4 sporulation protein compare
PS417_19630 -1.1 -2.3 LuxR family transcriptional regulator compare
PS417_20160 -1.1 -2.6 cysteine synthase compare
PS417_19805 -1.1 -2.3 flagellar M-ring protein FliF compare
PS417_22175 -1.1 -1.3 amino acid transporter LysE compare
PS417_19800 -1.1 -2.0 flagellar motor switch protein FliG compare
PS417_07710 -1.1 -2.7 membrane protein compare
PS417_17240 -1.1 -2.4 trigger factor compare
PS417_18545 -1.1 -2.4 cell division protein compare
PS417_04170 -1.1 -4.1 stringent starvation protein A compare
PS417_09605 -1.1 -1.9 glycosyl transferase compare
PS417_26370 -1.1 -2.2 RNA helicase compare
PS417_26985 -1.1 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_15105 -1.1 -4.5 membrane protein compare
PS417_19650 -1.1 -2.3 chemotaxis protein CheW compare
PS417_18070 -1.1 -0.9 general secretion pathway protein GspH compare
PS417_24710 -1.0 -4.3 lipoprotein compare
PS417_17160 -1.0 -1.9 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_09210 -1.0 -0.8 TetR family transcriptional regulator compare
PS417_16510 -1.0 -2.3 Clp protease ClpX compare
PS417_07770 -1.0 -1.3 hypothetical protein compare
PS417_08195 -1.0 -3.6 hypothetical protein compare
PS417_24895 -1.0 -1.2 hypothetical protein compare
PS417_15285 -1.0 -0.9 type VI secretion protein compare
PS417_08730 -1.0 -1.2 cytochrome C compare
PS417_24835 -1.0 -3.2 hypothetical protein compare
PS417_20610 -1.0 -1.0 hypothetical protein compare
PS417_16520 -1.0 -1.3 cold-shock protein compare
PS417_02950 -1.0 -1.7 tRNA-dihydrouridine synthase B compare
PS417_00085 -1.0 -1.2 16S rRNA methyltransferase compare
PS417_01580 -1.0 -1.2 imidazole glycerol phosphate synthase compare
PS417_00960 -1.0 -1.6 transcriptional regulator compare
PS417_01915 -1.0 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_24765 -1.0 -2.1 membrane protein compare
PS417_15535 -1.0 -2.8 oxidoreductase compare
PS417_10185 -1.0 -2.0 hypothetical protein compare
PS417_03005 -1.0 -3.8 arginine decarboxylase compare
PS417_00195 -1.0 -1.3 hypothetical protein compare
PS417_19665 -1.0 -2.3 flagellar motor protein MotD compare
PS417_18710 -0.9 -3.2 hypothetical protein compare
PS417_19355 -0.9 -2.4 glutaredoxin compare
PS417_26850 -0.9 -0.5 twin-arginine translocation pathway signal protein compare
PS417_27155 -0.9 -1.3 aliphatic sulfonates transport ATP-binding subunit compare
PS417_22795 -0.9 -1.3 exclusion suppressor FxsA compare
PS417_12595 -0.9 -1.0 transcriptional regulator compare
PS417_02720 -0.9 -0.7 TetR family transcriptional regulator compare
PS417_05865 -0.9 -1.5 hypothetical protein compare
PS417_12490 -0.9 -1.1 autotransporter adhesin compare
PS417_05100 -0.9 -1.4 RNA polymerase sigma factor compare
PS417_18570 -0.9 -2.1 peptidoglycan-binding protein compare
PS417_23805 -0.9 -2.4 acetolactate synthase 3 regulatory subunit compare
PS417_04650 -0.9 -0.5 D-alanine--D-alanine ligase compare
PS417_07000 -0.9 -2.0 hypothetical protein compare
PS417_03515 -0.9 -1.3 type III secretion protein compare
PS417_09035 -0.9 -1.5 hypothetical protein compare
PS417_06895 -0.9 -2.3 DNA-binding protein compare
PS417_19335 -0.9 -1.4 isochorismatase compare
PS417_13510 -0.9 -0.8 polyketide cyclase compare
PS417_13505 -0.9 -2.9 alpha/beta hydrolase compare
PS417_01570 -0.9 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_21480 -0.9 -0.7 23S rRNA pseudouridylate synthase compare
PS417_03705 -0.9 -2.4 2-alkenal reductase compare
PS417_12355 -0.9 -0.9 magnesium chelatase compare
PS417_22315 -0.9 -2.1 DNA-3-methyladenine glycosylase compare
PS417_12310 -0.9 -3.6 methionine synthase compare
PS417_02555 -0.9 -4.9 exoribonuclease R compare
PS417_25175 -0.9 -1.5 hypothetical protein compare
PS417_09465 -0.9 -2.9 FMN reductase compare
PS417_27640 -0.9 -0.9 TetR family transcriptional regulator compare
PS417_19605 -0.8 -0.9 hypothetical protein compare
PS417_16790 -0.8 -2.0 ABC transporter permease compare
PS417_23370 -0.8 -2.4 protoheme IX farnesyltransferase compare
PS417_02065 -0.8 -3.5 membrane protein compare
PS417_02255 -0.8 -1.1 lipopolysaccharide kinase compare
PS417_17015 -0.8 -2.3 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PS417_19690 -0.8 -2.2 histidine kinase compare
PS417_12795 -0.8 -3.9 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_10010 -0.8 -1.8 Replication protein P compare
PS417_19835 -0.8 -1.0 flagellar biosynthesis protein FliS compare
PS417_07945 -0.8 -1.0 hypothetical protein compare
PS417_05880 -0.8 -2.9 ribosomal protein S12 methylthiotransferase compare
PS417_08025 -0.8 -0.9 acetylornithine aminotransferase compare
PS417_13255 -0.8 -1.5 ABC transporter compare
PS417_11070 -0.8 -1.9 rhizopine-binding protein compare
PS417_25645 -0.8 -2.1 peptidase M23 compare
PS417_15110 -0.8 -3.0 protein BatD compare
PS417_09340 -0.8 -2.6 spermidine/putrescine ABC transporter ATP-binding protein compare
PS417_03780 -0.8 -1.1 general secretion pathway protein GspH compare
PS417_21065 -0.8 -1.4 3-methylitaconate isomerase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in agar plate interaction experiments