Experiment set15IT007 for Agrobacterium fabrum C58

Compare to:

LB control

200 most important genes:

  gene name fitness t score description  
Atu0602 -5.7 -9.5 glutamine synthetase compare
Atu0421 -4.8 -2.1 ABC transporter, membrane spanning protein compare
Atu2684 -4.8 -3.3 hypothetical protein compare
Atu0030 -4.3 -2.6 phosphocarrier protein HPr compare
Atu0422 -4.1 -2.8 ABC transporter, membrane spanning protein compare
Atu0659 -4.1 -7.4 NTP pyrophosphohydrolase, MutT family compare
Atu4217 -4.0 -2.7 TetR family transcriptional regulator compare
Atu0999 -3.8 -2.6 magnesium transport protein compare
Atu0601 -3.1 -9.9 oxidoreductase compare
Atu2439 -2.6 -2.1 hypothetical protein compare
Atu4317 -2.5 -3.7 TetR family transcriptional regulator compare
Atu0434 -2.5 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0190 -2.4 -8.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0331 -2.4 -4.9 sigma-54 modulation protein compare
Atu0189 -2.3 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu8095 -2.2 -11.2 hypothetical protein compare
Atu1021 -2.2 -2.8 outer membrane protein compare
Atu0188 -2.2 -3.4 ABC transporter, membrane spanning protein (peptide) compare
Atu1030 -2.1 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3012 -2.1 -3.2 hypothetical protein compare
Atu1774 -2.1 -7.6 ABC transporter, substrate binding protein (peptide) compare
Atu0368 -2.0 -6.5 tRNA pseudouridine synthase I compare
Atu0784 -1.9 -3.2 hypothetical protein compare
Atu3763 -1.9 -1.3 hypothetical protein compare
Atu6098 -1.9 -1.5 transcriptional regulator, HTH family compare
Atu1359 -1.8 -1.5 dnaK deletion suppressor protein compare
Atu0978 -1.8 -7.6 two component response regulator compare
Atu1076 -1.7 -3.7 colicin V production protein compare
Atu3910 -1.7 -4.6 LamB/YcsF family protein compare
Atu0912 -1.6 -1.3 Na+/H+ antiporter compare
Atu1163 -1.6 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4635 -1.6 -5.1 hypothetical protein compare
Atu3598 -1.6 -1.6 thiol:disulfide interchange protein compare
Atu0051 -1.5 -6.0 two component sensor kinase compare
Atu4892 -1.5 -11.2 hypothetical protein compare
Atu3010 -1.5 -8.4 hypothetical protein compare
Atu4890 -1.5 -3.5 IS426 transposase compare
Atu1803 -1.4 -8.0 cold shock protein compare
Atu4888 -1.4 -5.8 hypothetical protein compare
Atu0050 -1.4 -5.5 two component response regulator compare
Atu2125 -1.4 -2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu3015 -1.4 -7.9 hypothetical protein compare
Atu1677 -1.3 -4.0 queuine tRNA-ribosyltransferase compare
Atu1099 -1.3 -6.0 hypothetical protein compare
Atu1874 -1.3 -3.0 RecA protein compare
Atu3754 -1.3 -5.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4889 -1.3 -7.8 hypothetical protein compare
Atu3727 -1.3 -4.5 hypothetical protein compare
Atu1495 -1.3 -3.2 hypothetical protein compare
Atu8202 -1.3 -5.4 hypothetical protein compare
Atu0388 -1.2 -7.5 two component sensor kinase compare
Atu2245 -1.2 -7.0 Na+/Pi-cotransporter compare
Atu2113 -1.2 -2.9 N-acetylmuramoyl-L-alanine amidase compare
Atu2831 -1.2 -4.9 glucose inhibited division protein A compare
Atu4881 -1.2 -6.4 hypothetical protein compare
Atu3018 -1.2 -5.5 hypothetical protein compare
Atu8138 -1.2 -2.3 hypothetical protein compare
Atu3016 -1.2 -4.5 phosphoglyceromutase compare
Atu0142 -1.1 -2.1 cytochrome o ubiquinol oxidase subunit II compare
Atu0499 -1.1 -6.2 hypothetical protein compare
Atu4893 -1.1 -4.3 hypothetical protein compare
Atu0399 -1.1 -4.6 dihydroorotase compare
Atu3013 -1.1 -4.5 hypothetical protein compare
Atu0923 -1.1 -3.4 hypothetical protein compare
Atu1285 -1.1 -5.1 metal dependent hydrolase compare
Atu3011 -1.1 -4.1 ArsR family transcriptional regulator compare
Atu0086 -1.0 -1.2 ribosome-binding factor A compare
Atu3517 -1.0 -4.4 acetyltransferase compare
Atu1300 -1.0 -6.1 MFS permease compare
Atu3008 -1.0 -1.3 hypothetical protein compare
Atu3613 -1.0 -4.0 hypothetical protein compare
Atu3019 -1.0 -6.4 hypothetical protein compare
Atu4894 -1.0 -4.4 transposase compare
Atu2217 -1.0 -2.5 hypothetical protein compare
Atu1103 -0.9 -2.5 rRNA-adenine N6,N6-dimethyltransferase compare
Atu3121 -0.9 -1.4 cold shock protein compare
Atu4887 -0.9 -5.0 hypothetical protein compare
Atu2824 -0.9 -4.0 hypothetical protein compare
Atu3014 -0.9 -2.3 hypothetical protein compare
Atu3773 -0.9 -3.0 hypothetical protein compare
Atu3020 -0.9 -4.4 GntR family transcriptional regulator compare
Atu4711 -0.9 -3.9 two component sensor kinase compare
Atu8130 -0.9 -4.7 hypothetical protein compare
Atu1793 -0.9 -4.2 phosphatidylcholine synthase compare
Atu0269 -0.9 -3.3 exodeoxyribonuclease VII large subunit compare
Atu4897 -0.9 -1.8 hypothetical protein compare
Atu1739 -0.9 -3.0 permease compare
Atu1844 -0.9 -1.9 Phosphoribosylformylglycinamidine synthetase compare
Atu1760 -0.9 -1.4 hypothetical protein compare
Atu3006 -0.9 -2.8 hypothetical protein compare
Atu3023 -0.9 -5.6 sugar ABC transporter permease compare
Atu4468 -0.9 -5.3 iron transport ABC transporter permease compare
Atu0498 -0.9 -5.1 hypothetical protein compare
Atu3697 -0.8 -2.8 ATP-dependent protease LA 2 compare
Atu5125 -0.8 -2.7 GntR family transcriptional regulator compare
Atu3750 -0.8 -2.5 thiamine-phosphate pyrophosphorylase compare
Atu2803 -0.8 -2.7 Cobalamin biosynthesis associated protein compare
Atu0298 -0.8 -3.6 orotidine 5 compare
Atu3005 -0.8 -1.3 hypothetical protein compare
Atu4173 -0.8 -1.8 phosphoenolpyruvate-protein phosphotransferase compare
Atu8087 -0.8 -1.1 putative peptidoglycan binding protein compare
Atu3663 -0.8 -1.4 hypothetical protein compare
Atu3022 -0.8 -5.1 sugar ABC transporter permease compare
Atu2799 -0.8 -3.0 precorrin-6x reductase compare
Atu4880 -0.8 -4.8 AraC family transcriptional regulator compare
Atu3009 -0.8 -1.0 exopolysaccharide production protein compare
Atu3021 -0.8 -4.9 sugar ABC transporter ATPase compare
Atu4877 -0.8 -5.2 short-chain dehydrogenase compare
Atu2797 -0.8 -2.3 cobalamin biosynthesis protein compare
Atu1141 -0.8 -3.5 Phosphoribosylglycinamide synthetase compare
Atu4879 -0.7 -4.0 hypothetical protein compare
Atu2821 -0.7 -2.6 transcriptional regulator, GntR family compare
Atu4773 -0.7 -1.7 two component response regulator compare
Atu6131 -0.7 -2.6 TraR Antiactivator compare
Atu0251 -0.7 -5.1 hypothetical protein compare
Atu1810 -0.7 -0.6 hypothetical protein compare
Atu1678 -0.7 -3.1 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu0486 -0.7 -3.0 dihydroorotate dehydrogenase compare
Atu5513 -0.7 -1.4 cold shock protein compare
Atu0638 -0.7 -1.7 hypothetical protein compare
Atu3759 -0.7 -1.3 hypothetical protein compare
Atu2832 -0.7 -2.3 tRNA modification GTPase compare
Atu1140 -0.7 -3.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4187 -0.7 -1.1 tRNA-Met compare
Atu2207 -0.7 -1.4 two component sensor kinase compare
Atu1056 -0.7 -2.3 hypothetical protein compare
Atu3739 -0.7 -2.8 phosphoglycerate kinase compare
Atu4873 -0.7 -3.4 TetR family transcriptional regulator compare
Atu8191 -0.7 -1.5 hypothetical protein compare
Atu2808 -0.7 -4.2 cobyric acid synthase compare
Atu2692 -0.7 -3.0 intracellular septation protein compare
Atu4878 -0.7 -3.3 hypothetical protein compare
Atu2798 -0.7 -2.2 precorrin-6y methyltransferase compare
Atu3025 -0.7 -5.0 oligo alginate lyase compare
Atu2555 -0.7 -2.8 L-lysine 2,3-aminomutase compare
Atu0658 -0.7 -4.4 phosphate permease compare
Atu2057 -0.7 -1.7 DNA helicase II compare
Atu1725 -0.7 -2.2 hypothetical protein compare
Atu4876 -0.7 -5.3 oxidoreductase compare
Atu2073 -0.7 -2.4 membrane protein compare
Atu3249 -0.6 -3.6 septum formation inhibitor compare
Atu1127 -0.6 -1.7 molybdopterin converting factor small subunit compare
Atu4875 -0.6 -3.4 hypothetical protein compare
Atu3698 -0.6 -2.3 thioredoxin compare
Atu2740 -0.6 -2.6 transcriptional regulator, GntR family compare
Atu2192 -0.6 -1.1 hypothetical protein compare
Atu4514 -0.6 -2.2 RpiR family transcriptional regulator compare
Atu3706 -0.6 -3.4 D-3-phosphoglycerate dehydrogenase compare
Atu4214 -0.6 -2.9 cold shock protein compare
Atu1845 -0.6 -2.7 phosphoribosylformylglycinamidine synthase I compare
Atu1846 -0.6 -1.2 hypothetical protein compare
Atu0184 -0.6 -1.5 glucokinase compare
Atu1714 -0.6 -1.2 exonuclease III compare
Atu1075 -0.6 -3.4 amidophosphoribosyltransferase compare
Atu3777 -0.6 -4.4 hypothetical protein compare
Atu0824 -0.6 -1.0 hypothetical protein compare
Atu4896 -0.6 -1.3 acetyltransferase compare
Atu1679 -0.6 -2.0 peptidyl prolyl cis-trans isomerase compare
Atu2648 -0.6 -1.9 hypothetical protein compare
Atu8082 -0.6 -1.8 hypothetical protein compare
Atu3603 -0.6 -1.6 two component response regulator compare
Atu8029 -0.6 -1.3 hypothetical protein compare
Atu0777 -0.6 -0.9 hypothetical protein compare
Atu2532 -0.6 -2.6 transcriptional regulator, MarR family compare
Atu2606 -0.6 -3.0 transcriptional regulator, GntR family compare
Atu0692 -0.6 -3.4 glutathione-regulated potassium-efflux system protein compare
Atu0036 -0.6 -1.9 hypothetical protein compare
Atu2801 -0.6 -2.1 precorrin-2 C20 methyltransferase compare
Atu1589 -0.6 -2.1 aminotransferase, class I compare
Atu0533 -0.6 -1.3 putative inhibitor of septum formation compare
Atu4502 -0.6 -3.0 cobalamin synthesis protein compare
Atu1031 -0.6 -2.0 hypothetical protein compare
Atu3712 -0.6 -1.0 hypothetical protein compare
Atu3755 -0.6 -2.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2384 -0.6 -2.4 transcriptional regulator, TetR family compare
Atu3913 -0.6 -3.2 biotin carboxylase compare
Atu2786 -0.6 -2.0 hypothetical protein compare
Atu0780 -0.6 -3.7 hypothetical protein compare
Atu1737 -0.6 -0.9 hypothetical protein compare
Atu5088 -0.6 -1.4 hypothetical protein compare
Atu0289 -0.6 -4.6 Sun protein compare
Atu1546 -0.5 -1.8 transcriptional regulator, MerR family compare
Atu0977 -0.5 -1.7 serine protease DO-like protease compare
Atu2378 -0.5 -2.0 hypothetical protein compare
Atu5115 -0.5 -1.2 hypothetical protein compare
Atu0926 -0.5 -2.8 hypothetical protein compare
Atu3017 -0.5 -0.9 phosphoglyceromutase compare
Atu4567 -0.5 -2.9 ROK family transcriptional regulator compare
Atu1709 -0.5 -2.7 glycosyl hydrolase compare
Atu8093 -0.5 -2.7 hypothetical protein compare
Atu5146 -0.5 -1.6 hypothetical protein compare
Atu2746 -0.5 -1.6 hypothetical protein compare
Atu5075 -0.5 -3.6 GntR family transcriptional regulator compare
Atu3593 -0.5 -2.7 hypothetical protein compare
Atu4882 -0.5 -1.1 hypothetical protein compare
Atu1644 -0.5 -1.3 hypothetical protein compare
Atu4117 -0.5 -2.3 dipeptide ABC transporter ATPase compare
Atu1542 -0.5 -2.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu3532 -0.5 -2.1 GntR family transcriptional regulator compare
Atu0786 -0.5 -2.0 peptidase, family M16 compare


Specific Phenotypes

For 2 genes in this experiment