Experiment set15IT006 for Agrobacterium fabrum C58

Compare to:

LB control

200 most important genes:

  gene name fitness t score description  
Atu0602 -5.7 -10.9 glutamine synthetase compare
Atu0659 -5.1 -7.0 NTP pyrophosphohydrolase, MutT family compare
Atu0421 -4.9 -2.0 ABC transporter, membrane spanning protein compare
Atu0190 -3.7 -7.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2125 -3.5 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0999 -3.4 -4.0 magnesium transport protein compare
Atu0422 -3.4 -3.2 ABC transporter, membrane spanning protein compare
Atu0189 -3.2 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0601 -3.2 -11.3 oxidoreductase compare
Atu0784 -2.8 -5.1 hypothetical protein compare
Atu1030 -2.8 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0188 -2.7 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1774 -2.6 -9.5 ABC transporter, substrate binding protein (peptide) compare
Atu1163 -2.5 -3.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0912 -2.4 -1.2 Na+/H+ antiporter compare
Atu8095 -2.3 -7.5 hypothetical protein compare
Atu2684 -2.3 -2.1 hypothetical protein compare
Atu4217 -2.2 -2.3 TetR family transcriptional regulator compare
Atu0434 -2.2 -3.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2439 -2.1 -2.1 hypothetical protein compare
Atu3598 -2.0 -1.9 thiol:disulfide interchange protein compare
Atu1021 -2.0 -2.8 outer membrane protein compare
Atu6098 -2.0 -1.5 transcriptional regulator, HTH family compare
Atu0368 -1.9 -5.1 tRNA pseudouridine synthase I compare
Atu0030 -1.9 -2.2 phosphocarrier protein HPr compare
Atu3763 -1.9 -1.3 hypothetical protein compare
Atu1810 -1.8 -1.6 hypothetical protein compare
Atu3005 -1.7 -2.1 hypothetical protein compare
Atu2832 -1.7 -4.8 tRNA modification GTPase compare
Atu1076 -1.7 -2.7 colicin V production protein compare
Atu4635 -1.6 -6.0 hypothetical protein compare
Atu0184 -1.6 -2.9 glucokinase compare
Atu1739 -1.5 -4.0 permease compare
Atu3727 -1.4 -5.1 hypothetical protein compare
Atu3910 -1.4 -3.0 LamB/YcsF family protein compare
Atu0978 -1.4 -6.3 two component response regulator compare
Atu0499 -1.4 -7.0 hypothetical protein compare
Atu3730 -1.4 -1.8 hypothetical protein compare
Atu0769 -1.4 -1.5 protoheme IX farnesyltransferase compare
Atu2831 -1.3 -5.2 glucose inhibited division protein A compare
Atu4897 -1.3 -2.2 hypothetical protein compare
Atu2245 -1.3 -8.5 Na+/Pi-cotransporter compare
Atu4893 -1.3 -6.7 hypothetical protein compare
Atu4888 -1.3 -5.6 hypothetical protein compare
Atu2662 -1.3 -1.8 acetyltransferase compare
Atu3008 -1.2 -1.3 hypothetical protein compare
Atu1803 -1.2 -6.6 cold shock protein compare
Atu3006 -1.2 -4.6 hypothetical protein compare
Atu0050 -1.2 -5.1 two component response regulator compare
Atu3009 -1.2 -1.9 exopolysaccharide production protein compare
Atu2207 -1.2 -2.7 two component sensor kinase compare
Atu0388 -1.2 -7.7 two component sensor kinase compare
Atu1099 -1.1 -5.3 hypothetical protein compare
Atu1874 -1.1 -2.8 RecA protein compare
Atu3010 -1.1 -6.9 hypothetical protein compare
Atu3613 -1.1 -3.9 hypothetical protein compare
Atu0971 -1.1 -3.6 two component sensor kinase compare
Atu0036 -1.1 -1.8 hypothetical protein compare
Atu1300 -1.1 -5.8 MFS permease compare
Atu0269 -1.0 -4.2 exodeoxyribonuclease VII large subunit compare
Atu4892 -1.0 -7.8 hypothetical protein compare
Atu1359 -1.0 -1.0 dnaK deletion suppressor protein compare
Atu1678 -1.0 -3.9 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu8191 -1.0 -2.0 hypothetical protein compare
Atu2554 -1.0 -2.1 lysyl-tRNA synthetase compare
Atu4889 -1.0 -4.9 hypothetical protein compare
Atu0544 -1.0 -2.5 hypothetical protein compare
Atu0298 -1.0 -3.7 orotidine 5 compare
Atu1619 -1.0 -2.6 protein-export membrane protein SECG compare
Atu0031 -1.0 -1.5 PTS system, IIA component compare
Atu8130 -1.0 -5.7 hypothetical protein compare
Atu2787 -0.9 -1.2 hypothetical protein compare
Atu1546 -0.9 -4.1 transcriptional regulator, MerR family compare
Atu1285 -0.9 -4.6 metal dependent hydrolase compare
Atu4317 -0.9 -1.9 TetR family transcriptional regulator compare
Atu1515 -0.9 -4.4 hypothetical protein compare
Atu3001 -0.9 -2.1 hypothetical protein compare
Atu1103 -0.9 -3.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu4469 -0.9 -3.7 iron ABC transporter permease compare
Atu2682 -0.9 -2.6 hypothetical protein compare
Atu2193 -0.9 -1.0 hypothetical protein compare
Atu1850 -0.9 -1.9 phosphoribosylformylglycinamidine synthetase II compare
Atu1677 -0.9 -3.0 queuine tRNA-ribosyltransferase compare
Atu1573 -0.8 -1.4 hypothetical protein compare
Atu1793 -0.8 -5.1 phosphatidylcholine synthase compare
Atu1592 -0.8 -4.1 hypothetical protein compare
Atu1327 -0.8 -2.4 NADH-ubiquinone oxidoreductase compare
Atu2083 -0.8 -2.7 DNA repair protein RecN compare
Atu1056 -0.8 -3.4 hypothetical protein compare
Atu0486 -0.8 -4.0 dihydroorotate dehydrogenase compare
Atu2555 -0.8 -2.8 L-lysine 2,3-aminomutase compare
Atu0399 -0.8 -3.9 dihydroorotase compare
Atu6114 -0.8 -2.1 hypothetical protein compare
Atu8088 -0.8 -1.8 hypothetical protein compare
Atu2044 -0.8 -3.4 HFLC protein compare
Atu0923 -0.8 -3.9 hypothetical protein compare
Atu0977 -0.8 -2.9 serine protease DO-like protease compare
Atu0979 -0.8 -3.8 two component sensor kinase compare
Atu4894 -0.8 -4.2 transposase compare
Atu1679 -0.8 -2.4 peptidyl prolyl cis-trans isomerase compare
Atu2113 -0.8 -1.8 N-acetylmuramoyl-L-alanine amidase compare
Atu3249 -0.8 -4.3 septum formation inhibitor compare
Atu1967 -0.8 -3.4 hypothetical protein compare
Atu0498 -0.8 -4.7 hypothetical protein compare
Atu3777 -0.8 -5.3 hypothetical protein compare
Atu8202 -0.8 -3.5 hypothetical protein compare
Atu1364 -0.7 -2.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0251 -0.7 -5.4 hypothetical protein compare
Atu3011 -0.7 -2.9 ArsR family transcriptional regulator compare
Atu1845 -0.7 -2.9 phosphoribosylformylglycinamidine synthase I compare
Atu0777 -0.7 -1.0 hypothetical protein compare
Atu4890 -0.7 -1.9 IS426 transposase compare
Atu5125 -0.7 -2.8 GntR family transcriptional regulator compare
Atu2640 -0.7 -3.1 hypothetical protein compare
Atu0692 -0.7 -4.4 glutathione-regulated potassium-efflux system protein compare
Atu1844 -0.7 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu3012 -0.7 -1.1 hypothetical protein compare
Atu1495 -0.7 -2.1 hypothetical protein compare
Atu1141 -0.7 -2.4 Phosphoribosylglycinamide synthetase compare
Atu2489 -0.7 -3.3 hypothetical protein compare
Atu1522 -0.7 -4.2 transcriptional regulator, LacI family compare
Atu0533 -0.7 -2.1 putative inhibitor of septum formation compare
Atu3013 -0.7 -3.0 hypothetical protein compare
Atu2163 -0.7 -1.2 hypothetical protein compare
Atu0926 -0.7 -2.5 hypothetical protein compare
Atu8054 -0.7 -0.8 hypothetical protein compare
Atu2073 -0.7 -2.0 membrane protein compare
Atu4470 -0.7 -4.0 iron ABC transporter ATPase compare
Atu2124 -0.7 -2.2 transcriptional regulator, ArsR family compare
Atu2821 -0.7 -2.2 transcriptional regulator, GntR family compare
Atu2692 -0.7 -2.4 intracellular septation protein compare
Atu3014 -0.7 -1.7 hypothetical protein compare
Atu2057 -0.7 -1.7 DNA helicase II compare
Atu2808 -0.6 -3.3 cobyric acid synthase compare
Atu3754 -0.6 -3.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1354 -0.6 -0.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0051 -0.6 -2.6 two component sensor kinase compare
Atu2728 -0.6 -2.2 beta (1-->2) glucan export ATP-binding protein compare
Atu1645 -0.6 -3.6 ABC transporter, substrate binding protein compare
Atu0149 -0.6 -1.5 enoyl-(acyl-carrier-protein) reductase compare
Atu2710 -0.6 -3.3 hypothetical protein compare
Atu1031 -0.6 -1.5 hypothetical protein compare
Atu1475 -0.6 -1.5 hypothetical protein compare
Atu3396 -0.6 -4.4 ABC transporter substrate-binding protein compare
Atu3517 -0.6 -1.7 acetyltransferase compare
Atu4671 -0.6 -2.0 response regulator compare
Atu3018 -0.6 -2.9 hypothetical protein compare
Atu1260 -0.6 -1.2 hypothetical protein compare
Atu0331 -0.6 -2.1 sigma-54 modulation protein compare
Atu4502 -0.6 -3.2 cobalamin synthesis protein compare
Atu0995 -0.6 -3.5 hypothetical protein compare
Atu3469 -0.6 -2.1 phosphoglyceromutase compare
Atu2824 -0.6 -2.0 hypothetical protein compare
Atu0658 -0.6 -4.2 phosphate permease compare
Atu4161 -0.6 -0.7 hypothetical protein compare
Atu0876 -0.6 -1.2 superoxide dismutase compare
Atu0925 -0.6 -1.6 hypothetical protein compare
Atu3750 -0.6 -2.0 thiamine-phosphate pyrophosphorylase compare
Atu3248 -0.6 -3.0 cell division inhibitor compare
Atu1470 -0.6 -0.9 Camphor resistance protein compare
Atu1129 -0.6 -3.2 excinuclease ABC chain C compare
Atu4887 -0.6 -2.8 hypothetical protein compare
Atu1303 -0.6 -4.2 exoribonuclease compare
Atu5145 -0.6 -1.8 acetyltransferase compare
Atu0479 -0.6 -3.4 ABC transporter, substrate binding protein (amino acid) compare
Atu4214 -0.6 -2.7 cold shock protein compare
Atu3015 -0.6 -2.8 hypothetical protein compare
Atu1077 -0.5 -1.8 DNA repair protein compare
Atu1075 -0.5 -3.2 amidophosphoribosyltransferase compare
Atu2335 -0.5 -1.4 hypothetical protein compare
Atu3697 -0.5 -2.2 ATP-dependent protease LA 2 compare
Atu5163 -0.5 -2.7 type IV secretion protein AvhB2 compare
Atu0029 -0.5 -3.0 S-adenosylhomocysteine hydrolase compare
Atu0842 -0.5 -0.9 hypothetical protein compare
Atu1466 -0.5 -1.3 hypothetical protein compare
Atu6113 -0.5 -2.6 conserved hypothetical protein compare
Atu8046 -0.5 -2.1 hypothetical protein compare
Atu4061 -0.5 -2.1 exopolysaccharide production repressor protein compare
Atu2464 -0.5 -1.7 formyltetrahydrofolate deformylase compare
Atu3999 -0.5 -1.1 dithiobiotin synthetase compare
Atu1083 -0.5 -2.5 hypothetical protein compare
Atu4245 -0.5 -1.9 polyamine ABC transporter permease compare
Atu0723 -0.5 -1.0 FAD dependent oxidoreductase compare
Atu0751 -0.5 -2.5 ABC transporter, nucleotide binding/ATPase protein (cobalt) compare
Atu1238 -0.5 -3.1 polysaccharide export protein compare
Atu6131 -0.5 -2.0 TraR Antiactivator compare
Atu2378 -0.5 -1.8 hypothetical protein compare
Atu8082 -0.5 -1.5 hypothetical protein compare
Atu3634 -0.5 -1.5 penicillin-binding protein dacf precursor compare
Atu4501 -0.5 -2.4 hypothetical protein compare
Atu3698 -0.5 -1.9 thioredoxin compare
Atu2304 -0.5 -2.9 bacteroid development protein compare
Atu1500 -0.5 -1.8 rare lipoprotein A compare
Atu2807 -0.5 -2.3 cob(I)alamin adenosyltransferase compare
Atu1904 -0.5 -1.7 transcriptional regulator compare
Atu3466 -0.5 -1.7 ArsR family transcriptional regulator compare
Atu2059 -0.5 -2.5 transcriptional regulator, TetR family compare
Atu2827 -0.5 -2.1 hypothetical protein compare
Atu2352 -0.5 -0.7 hypothetical protein compare
Atu3429 -0.5 -0.9 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment