Experiment set14TCH664 for Pectobacterium carotovorum WPP14

Compare to:

Tuber-Atlantic

200 most important genes:

  gene name fitness t score description  
HER17_RS11775 -4.5 -3.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HER17_RS20130 -3.6 -5.3 YjeO family protein compare
HER17_RS18300 -3.4 -2.8 preprotein translocase subunit SecG compare
HER17_RS04955 -3.4 -2.3 hypothetical protein compare
HER17_RS10525 -3.2 -3.7 fumarate/nitrate reduction transcriptional regulator Fnr compare
HER17_RS20255 -3.1 -2.1 hypothetical protein compare
HER17_RS00725 -3.1 -7.9 6-phosphofructokinase compare
HER17_RS10115 -3.0 -9.8 DUF2931 family protein compare
HER17_RS02805 -2.8 -6.0 threonine synthase compare
HER17_RS08130 -2.7 -9.8 protein phosphatase CheZ compare
HER17_RS04935 -2.6 -11.1 hypothetical protein compare
HER17_RS12310 -2.6 -9.0 pyruvate formate lyase 1-activating protein compare
HER17_RS04610 -2.5 -11.0 membrane protein compare
HER17_RS00985 -2.5 -7.8 glutamate racemase compare
HER17_RS18395 -2.4 -4.1 transcriptional regulator ArgR compare
HER17_RS12285 -2.3 -9.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HER17_RS17175 -2.3 -2.1 phosphocarrier protein Hpr compare
HER17_RS15065 -2.3 -2.6 replication initiation negative regulator SeqA compare
HER17_RS11690 -2.2 -7.9 carboxy terminal-processing peptidase compare
HER17_RS06935 -2.2 -7.0 chorismate synthase compare
HER17_RS21475 -2.2 -2.1 thiol:disulfide interchange protein DsbA compare
HER17_RS21825 -2.2 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HER17_RS00410 -2.2 -12.8 sugar kinase compare
HER17_RS16210 -2.2 -3.0 hypothetical protein compare
HER17_RS01795 -2.2 -1.9 ribulose-phosphate 3-epimerase compare
HER17_RS12305 -2.2 -12.1 formate C-acetyltransferase compare
HER17_RS16635 -2.2 -7.3 membrane-bound lytic murein transglycosylase MltC compare
HER17_RS02680 -2.1 -2.4 transketolase compare
HER17_RS08960 -2.1 -5.0 pyruvate kinase PykF compare
HER17_RS08145 -2.1 -3.0 flagellar protein FlhE compare
HER17_RS13425 -2.1 -8.0 hypothetical protein compare
HER17_RS08555 -2.1 -13.6 glucans biosynthesis glucosyltransferase MdoH compare
HER17_RS14880 -2.1 -4.7 Tol-Pal system protein TolQ compare
HER17_RS11795 -2.0 -6.7 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HER17_RS11410 -2.0 -8.1 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HER17_RS20780 -2.0 -4.2 lipopolysaccharide heptosyltransferase RfaC compare
HER17_RS08155 -2.0 -2.8 anti-sigma-28 factor FlgM compare
HER17_RS10445 -1.9 -2.7 redox-regulated ATPase YchF compare
HER17_RS02780 -1.9 -5.5 two-component system response regulator ArcA compare
HER17_RS07635 -1.9 -3.1 hypothetical protein compare
HER17_RS19080 -1.9 -4.0 phosphoserine phosphatase compare
HER17_RS14765 -1.8 -11.1 UDP-glucose 4-epimerase GalE compare
HER17_RS21335 -1.8 -5.0 inorganic phosphate transporter PitA compare
HER17_RS02960 -1.8 -2.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HER17_RS06845 -1.8 -1.6 tRNA-Arg compare
HER17_RS14625 -1.8 -1.4 nucleotidyltransferase domain-containing protein compare
HER17_RS08930 -1.8 -2.9 Fe-S cluster assembly ATPase SufC compare
HER17_RS02720 -1.8 -1.6 ribose-5-phosphate isomerase RpiA compare
HER17_RS08660 -1.8 -5.4 beta-ketoacyl-ACP synthase II compare
HER17_RS02800 -1.8 -4.1 homoserine kinase compare
HER17_RS15450 -1.7 -1.2 DnaA inactivator Hda compare
HER17_RS01965 -1.7 -3.1 peptidylprolyl isomerase compare
HER17_RS08300 -1.7 -4.5 flagellar export chaperone FliS compare
HER17_RS04705 -1.7 -5.5 glutamate-5-semialdehyde dehydrogenase compare
HER17_RS16535 -1.7 -3.0 exodeoxyribonuclease V subunit gamma compare
HER17_RS08550 -1.7 -10.0 glucan biosynthesis protein G compare
HER17_RS02950 -1.6 -4.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HER17_RS06390 -1.6 -10.6 galactokinase compare
HER17_RS21600 -1.6 -3.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HER17_RS06385 -1.6 -6.8 galactose-1-phosphate uridylyltransferase compare
HER17_RS17180 -1.6 -5.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HER17_RS21565 -1.6 -6.1 two-component system sensor histidine kinase QseC compare
HER17_RS16525 -1.6 -2.8 exodeoxyribonuclease V subunit beta compare
HER17_RS12300 -1.6 -6.7 formate transporter FocA compare
HER17_RS20925 -1.5 -4.4 type II toxin-antitoxin system Phd/YefM family antitoxin compare
HER17_RS10270 -1.5 -8.3 hypothetical protein compare
HER17_RS16630 -1.5 -4.1 oxidative damage protection protein compare
HER17_RS12160 -1.5 -2.2 citrate lyase holo-[acyl-carrier protein] synthase compare
HER17_RS13490 -1.5 -6.2 NAD-dependent malic enzyme compare
HER17_RS21975 -1.4 -2.1 5-dehydro-4-deoxy-D-glucuronate isomerase compare
HER17_RS05045 -1.4 -5.2 recombinase RecA compare
HER17_RS03455 -1.4 -4.9 D-threonate 4-phosphate dehydrogenase compare
HER17_RS07080 -1.4 -2.1 phosphate acetyltransferase compare
HER17_RS04700 -1.4 -3.9 glutamate 5-kinase compare
HER17_RS03865 -1.4 -5.1 hypothetical protein compare
HER17_RS18830 -1.4 -1.4 membrane protein FxsA compare
HER17_RS06280 -1.4 -7.4 tRNA 5-hydroxyuridine modification protein YegQ compare
HER17_RS11890 -1.4 -4.5 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
HER17_RS20215 -1.4 -3.5 YhdT family protein compare
HER17_RS17890 -1.4 -3.7 site-specific tyrosine recombinase XerD compare
HER17_RS02340 -1.4 -6.0 glucose-6-phosphate isomerase compare
HER17_RS02510 -1.4 -3.4 ABC transporter ATP-binding protein compare
HER17_RS07175 -1.3 -2.2 NADH-quinone oxidoreductase subunit L compare
HER17_RS14435 -1.3 -1.3 hypothetical protein compare
HER17_RS21610 -1.3 -4.3 F0F1 ATP synthase subunit I compare
HER17_RS20770 -1.3 -3.5 ADP-glyceromanno-heptose 6-epimerase compare
HER17_RS17315 -1.3 -4.3 ribose 5-phosphate isomerase B compare
HER17_RS02380 -1.3 -4.2 fumarate reductase subunit FrdC compare
HER17_RS21690 -1.3 -6.9 phosphate ABC transporter ATP-binding protein PstB compare
HER17_RS07705 -1.3 -3.2 DUF2594 family protein compare
HER17_RS12890 -1.3 -4.6 phosphatase PAP2 family protein compare
HER17_RS07130 -1.3 -2.1 NADH-quinone oxidoreductase subunit B compare
HER17_RS12355 -1.3 -3.5 DNA translocase FtsK 4TM domain-containing protein compare
HER17_RS13395 -1.3 -4.5 cyclic pyranopterin monophosphate synthase MoaC compare
HER17_RS05040 -1.3 -3.5 nicotinamide-nucleotide amidase compare
HER17_RS15060 -1.3 -7.7 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
HER17_RS00845 -1.3 -8.5 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
HER17_RS05260 -1.3 -1.2 terminase family protein compare
HER17_RS07120 -1.3 -6.3 transcriptional regulator LrhA compare
HER17_RS19065 -1.3 -1.6 peptide chain release factor 3 compare
HER17_RS06155 -1.2 -1.1 IMP dehydrogenase compare
HER17_RS03655 -1.2 -4.5 alanine racemase compare
HER17_RS19900 -1.2 -8.0 aerobic respiration two-component sensor histidine kinase ArcB compare
HER17_RS01125 -1.2 -6.3 exopolyphosphatase compare
HER17_RS10585 -1.2 -4.2 SrfA family protein compare
HER17_RS14565 -1.2 -3.7 oligosaccharide repeat unit polymerase compare
HER17_RS02725 -1.2 -5.6 phosphoglycerate dehydrogenase compare
HER17_RS14600 -1.2 -5.2 tyrosine-protein kinase Wzc compare
HER17_RS12375 -1.2 -2.8 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
HER17_RS12370 -1.2 -1.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
HER17_RS12170 -1.2 -5.9 citrate (pro-3S)-lyase subunit beta compare
HER17_RS01320 -1.2 -7.5 class I adenylate cyclase compare
HER17_RS14605 -1.2 -2.6 protein-tyrosine-phosphatase compare
HER17_RS15595 -1.2 -7.8 ribonucleoside-diphosphate reductase subunit alpha compare
HER17_RS08120 -1.2 -7.3 chemotaxis response regulator protein-glutamate methylesterase compare
HER17_RS04685 -1.2 -6.5 esterase FrsA compare
HER17_RS05840 -1.1 -3.8 YfhL family 4Fe-4S dicluster ferredoxin compare
HER17_RS21745 -1.1 -6.2 hypothetical protein compare
HER17_RS01590 -1.1 -2.1 ABC transporter ATP-binding protein compare
HER17_RS01700 -1.1 -4.8 two-component system response regulator OmpR compare
HER17_RS11785 -1.1 -4.4 MurR/RpiR family transcriptional regulator compare
HER17_RS06955 -1.1 -2.3 YfcL family protein compare
HER17_RS12165 -1.1 -4.3 citrate lyase subunit alpha compare
HER17_RS15965 -1.1 -5.6 transcriptional regulator NrdR compare
HER17_RS04385 -1.1 -2.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HER17_RS13405 -1.1 -3.7 GTP 3',8-cyclase MoaA compare
HER17_RS01135 -1.1 -3.4 thioredoxin TrxA compare
HER17_RS03990 -1.1 -3.7 gamma-glutamylcyclotransferase compare
HER17_RS16020 -1.1 -6.7 branched-chain amino acid transport system II carrier protein compare
HER17_RS11885 -1.1 -4.9 carboxy-S-adenosyl-L-methionine synthase CmoA compare
HER17_RS07185 -1.1 -1.8 NADH-quinone oxidoreductase subunit NuoN compare
HER17_RS07600 -1.0 -2.8 hypothetical protein compare
HER17_RS13515 -1.0 -4.5 molybdopterin molybdotransferase MoeA compare
HER17_RS15600 -1.0 -6.0 ribonucleotide-diphosphate reductase subunit beta compare
HER17_RS14885 -1.0 -3.4 tol-pal system-associated acyl-CoA thioesterase compare
HER17_RS12365 -1.0 -4.1 thioredoxin-disulfide reductase compare
HER17_RS21675 -1.0 -6.6 phosphate ABC transporter substrate-binding protein PstS compare
HER17_RS10870 -1.0 -5.1 HTH-type transcriptional regulator CysB compare
HER17_RS18705 -1.0 -7.2 altronate dehydratase family protein compare
HER17_RS10485 -1.0 -1.6 peptide chain release factor N(5)-glutamine methyltransferase compare
HER17_RS14340 -1.0 -2.0 DUF1869 domain-containing protein compare
HER17_RS19530 -1.0 -3.1 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
HER17_RS04765 -1.0 -1.7 hypothetical protein compare
HER17_RS07155 -1.0 -1.8 NADH-quinone oxidoreductase subunit NuoH compare
HER17_RS10735 -1.0 -3.3 ROK family transcriptional regulator compare
HER17_RS19695 -1.0 -4.5 DedA family protein compare
HER17_RS02530 -1.0 -6.4 hypothetical protein compare
HER17_RS10575 -1.0 -6.7 virulence factor SrfC family protein compare
HER17_RS20195 -1.0 -1.1 type II 3-dehydroquinate dehydratase compare
HER17_RS21425 -1.0 -1.1 ribosome-dependent GTPase TypA compare
HER17_RS08945 -1.0 -2.9 cysteine desulfuration protein SufE compare
HER17_RS10580 -1.0 -7.2 virulence factor SrfB compare
HER17_RS08250 -1.0 -4.6 flagellar basal body-associated protein FliL compare
HER17_RS21450 -1.0 -7.8 oxygen-independent coproporphyrinogen III oxidase compare
HER17_RS20775 -1.0 -2.8 ADP-heptose--LPS heptosyltransferase RfaF compare
HER17_RS19525 -1.0 -7.1 anaerobic ribonucleoside-triphosphate reductase compare
HER17_RS09430 -1.0 -4.5 exoribonuclease II compare
HER17_RS20080 -1.0 -1.1 PTS phosphocarrier protein NPr compare
HER17_RS14485 -1.0 -7.7 YjbH domain-containing protein compare
HER17_RS15925 -0.9 -1.1 exodeoxyribonuclease VII small subunit compare
HER17_RS11540 -0.9 -6.1 PD40 domain-containing protein compare
HER17_RS09235 -0.9 -3.3 HTH-type transcriptional repressor PurR compare
HER17_RS10710 -0.9 -1.7 DUF1283 family protein compare
HER17_RS14495 -0.9 -5.2 YjbF family lipoprotein compare
HER17_RS05400 -0.9 -3.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
HER17_RS07895 -0.9 -2.5 hypothetical protein compare
HER17_RS16850 -0.9 -3.9 MarR family transcriptional regulator compare
HER17_RS08710 -0.9 -1.8 DUF1425 domain-containing protein compare
HER17_RS01930 -0.9 -2.5 YheU family protein compare
HER17_RS12805 -0.9 -4.8 KTSC domain-containing protein compare
HER17_RS01115 -0.9 -1.7 peptidylprolyl isomerase compare
HER17_RS06470 -0.9 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
HER17_RS08615 -0.9 -4.9 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
HER17_RS12975 -0.9 -5.4 nucleoid-associated protein YejK compare
HER17_RS07765 -0.9 -2.0 phage tail assembly protein compare
HER17_RS06340 -0.9 -1.9 glucose PTS transporter subunit EIIB compare
HER17_RS00590 -0.9 -6.0 hypothetical protein compare
HER17_RS01190 -0.9 -5.6 ECA oligosaccharide polymerase compare
HER17_RS20040 -0.9 -3.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
HER17_RS14505 -0.9 -5.1 NADP-dependent phosphogluconate dehydrogenase compare
HER17_RS06880 -0.9 -1.3 YfcZ/YiiS family protein compare
HER17_RS08285 -0.9 -1.7 flagellar hook-basal body complex protein FliE compare
HER17_RS01260 -0.9 -2.3 amino acid ABC transporter ATP-binding protein compare
HER17_RS05765 -0.9 -4.7 ATP-dependent RNA helicase SrmB compare
HER17_RS03075 -0.9 -3.8 3-isopropylmalate dehydratase large subunit compare
HER17_RS16595 -0.9 -5.2 TerC family protein compare
HER17_RS03070 -0.8 -3.0 3-isopropylmalate dehydratase small subunit compare
HER17_RS06175 -0.8 -2.4 hypothetical protein compare
HER17_RS09380 -0.8 -2.0 LapA family protein compare
HER17_RS02375 -0.8 -2.6 fumarate reductase subunit FrdD compare
HER17_RS16345 -0.8 -3.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
HER17_RS18420 -0.8 -2.9 G/U mismatch-specific DNA glycosylase compare
HER17_RS10145 -0.8 -1.2 GntR family transcriptional regulator compare
HER17_RS01370 -0.8 -3.3 magnesium/cobalt transporter CorA compare
HER17_RS20785 -0.8 -2.9 putative lipopolysaccharide heptosyltransferase III compare
HER17_RS03460 -0.8 -3.0 DeoR/GlpR family DNA-binding transcription regulator compare
HER17_RS02520 -0.8 -5.5 TolC family protein compare
HER17_RS04095 -0.8 -4.0 2-hydroxy-3-oxopropionate reductase compare
HER17_RS11640 -0.8 -2.0 two-component system response regulator PhoP compare
HER17_RS08235 -0.8 -2.6 flagellar biosynthetic protein FliO compare


Specific Phenotypes

For 8 genes in this experiment