Experiment set14TCH664 for Pectobacterium carotovorum WPP14

Tuber-Atlantic

Group: plant
Media: Tuber-Atlantic
Culturing: PcWPP14, Potato_tuber
By: Tyler on 10/28/21

Specific Phenotypes

For 8 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Type III secretion system orphans	2
Fermentations: Mixed acid	1
Murein hydrolase regulation and cell death	1
Pseudomonas quinolone signal PQS	1
Pyruvate metabolism I: anaplerotic reactions, PEP	1
Quorum sensing regulation in Pseudomonas	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pyruvate metabolism
• Biosynthesis of phenylpropanoids
• Biosynthesis of terpenoids and steroids
• Biosynthesis of alkaloids derived from terpenoid and polyketide

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-malate degradation II	1	1	1
malate/L-aspartate shuttle pathway	2	2	1
L-carnitine degradation II	3	1	1
chitin deacetylation	4	3	1
C4 photosynthetic carbon assimilation cycle, NAD-ME type	11	8	2
glyoxylate cycle	6	6	1
TCA cycle VIII (Chlamydia)	6	5	1
methylgallate degradation	6	2	1
gluconeogenesis I	13	13	2
anaerobic energy metabolism (invertebrates, cytosol)	7	5	1
incomplete reductive TCA cycle	7	5	1
pyruvate fermentation to propanoate I	7	3	1
protocatechuate degradation I (meta-cleavage pathway)	8	3	1
superpathway of anaerobic energy metabolism (invertebrates)	17	10	2
TCA cycle V (2-oxoglutarate synthase)	9	7	1
TCA cycle II (plants and fungi)	9	7	1
TCA cycle IV (2-oxoglutarate decarboxylase)	9	7	1
TCA cycle I (prokaryotic)	10	9	1
TCA cycle III (animals)	10	8	1
anaerobic energy metabolism (invertebrates, mitochondrial)	10	5	1
superpathway of vanillin and vanillate degradation	10	3	1
reductive TCA cycle I	11	8	1
L-glutamate degradation VIII (to propanoate)	11	3	1
superpathway of glyoxylate bypass and TCA	12	11	1
gluconeogenesis III	12	9	1
reductive TCA cycle II	12	8	1
syringate degradation	12	3	1
formaldehyde assimilation I (serine pathway)	13	8	1
(S)-lactate fermentation to propanoate, acetate and hydrogen	13	7	1
superpathway of glyoxylate cycle and fatty acid degradation	14	11	1
mixed acid fermentation	16	16	1
methylaspartate cycle	19	8	1
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle	22	18	1
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass	26	25	1
Methanobacterium thermoautotrophicum biosynthetic metabolism	56	22	1