Experiment set14TCH661 for Pectobacterium carotovorum WPP14

Tuber-Atlantic

Group: plant
Media: Tuber-Atlantic
Culturing: PcWPP14, Potato_tuber
By: Tyler on 10/28/21

Specific Phenotypes

For 11 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Alginate metabolism	2
Mannose Metabolism	2
Biogenesis of c-type cytochromes	1
Capsular heptose biosynthesis	1
Colanic acid biosynthesis	1
L-Arabinose utilization	1
Methicillin resistance in Staphylococci	1
Peptidoglycan Biosynthesis	1
Periplasmic disulfide interchange	1
Teichoic and lipoteichoic acids biosynthesis	1
Transcription factors bacterial	1
Type IV pilus	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Fructose and mannose metabolism
• Nucleotide sugars metabolism
• Peptidoglycan biosynthesis
• High-mannose type N-glycan biosynthesis
• Sphingolipid metabolism
• Lysine degradation
• Aminophosphonate metabolism
• N-Glycan biosynthesis
• O-Glycan biosynthesis
• O-Mannosyl glycan biosynthesis
• Keratan sulfate biosynthesis
• Lipopolysaccharide biosynthesis
• Glycerolipid metabolism
• Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
• Glycerophospholipid metabolism
• Glycosphingolipid biosynthesis - lacto and neolacto series
• Glycosphingolipid biosynthesis - globo series
• Glycosphingolipid biosynthesis - ganglio series
• Biotin metabolism
• Carotenoid biosynthesis - General
• Zeatin biosynthesis
• Flavonoid biosynthesis
• Anthocyanin biosynthesis
• Flavone and flavonol biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
β-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation	3	2	2
GDP-mannose biosynthesis	4	4	2
D-mannose degradation II	2	2	1
periplasmic disulfide bond reduction	2	2	1
D-mannose degradation I	2	2	1
GDP-6-deoxy-D-talose biosynthesis	2	1	1
GDP-D-rhamnose biosynthesis	2	1	1
GDP-D-perosamine biosynthesis	2	1	1
GDP-L-fucose biosynthesis I (from GDP-D-mannose)	3	3	1
mannitol biosynthesis	3	2	1
GDP-mycosamine biosynthesis	3	1	1
GDP-N-acetyl-α-D-perosamine biosynthesis	3	1	1
GDP-N-formyl-α-D-perosamine biosynthesis	3	1	1
β-(1,4)-mannan degradation	7	2	2
colanic acid building blocks biosynthesis	11	11	3
mannitol degradation II	4	3	1
peptidoglycan maturation (meso-diaminopimelate containing)	12	3	3
superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis	14	9	3
enterobacterial common antigen biosynthesis	5	4	1
GDP-L-colitose biosynthesis	5	3	1
1,5-anhydrofructose degradation	5	3	1
Escherichia coli serotype O:15 O antigen biosynthesis	5	1	1
Salmonella enterica serotype O:54 O antigen biosynthesis	5	1	1
Escherichia coli serotype O:149/Shigella boydii serotype O1 O antigen biosynthesis	6	1	1
Escherichia coli serotype O:56 O antigen biosynthesis	6	1	1
Escherichia coli serotype O:50 O antigen biosynthesis	6	1	1
Escherichia coli serotype O:177 O antigen biosynthesis	6	1	1
Escherichia coli serotype O:77/Salmonella enterica serotype O:6,14 O antigen biosynthesis	6	1	1
Salmonella enterica serotype O:13 O antigen biosynthesis	6	1	1
Salmonella enterica serotype O:39 O antigen biosynthesis	7	3	1
Salmonella enterica serotype O:18 O antigen biosynthesis	7	1	1
Escherichia coli serotype O:111/Salmonella enterica serotype O:35 O antigen biosynthesis	7	1	1
Escherichia coli serotype O:157/Salmonella enterica serotype O:30 O antigen biosynthesis	7	1	1
Escherichia coli serotype O:7 O antigen biosynthesis	7	1	1
Escherichia coli serotype O:2 O antigen biosynthesis	7	1	1
Escherichia coli serotype O:85/Salmonella enterica serotype O:17 O antigen biosynthesis	7	1	1
Escherichia coli serotype O:71/Salmonella enterica serotype O:28ac O antigen biosynthesis	7	1	1
Escherichia coli serotype O:152 O antigen biosynthesis	7	1	1
Salmonella enterica serotype O:6,7 O antigen biosynthesis	7	1	1
Escherichia coli serotype O:1B/Salmonella enterica serotype O:42 O antigen biosynthesis	7	1	1
Escherichia coli serotype O:128 O antigen biosynthesis	8	1	1
Escherichia coli serotype O:49 O antigen biosynthesis	8	1	1
Escherichia coli serotype O:51/Salmonella enterica serotype O:57 O antigen biosynthesis	8	1	1
Escherichia coli serotype O:86 O antigen biosynthesis	8	1	1
Escherichia coli serotype O:52 O antigen biosynthesis	8	1	1
Shigella boydii serotype 6 O antigen biosynthesis	8	1	1
Escherichia coli serotype O:127 O antigen biosynthesis	8	1	1
Escherichia coli serotype O:104 O antigen biosynthesis	8	1	1
Escherichia coli serotype O:117 O antigen biosynthesis	8	1	1
Escherichia coli serotype O:107 O antigen biosynthesis	8	1	1
Escherichia coli serotype O:21/Salmonella enterica serotype O:38 O antigen biosynthesis	8	1	1
Escherichia coli serotype O:55/Salmonella enterica serotype O:50 O antigen biosynthesis	8	1	1
peptidoglycan biosynthesis IV (Enterococcus faecium)	17	12	2
peptidoglycan biosynthesis II (staphylococci)	17	12	2
peptidoglycan biosynthesis V (β-lactam resistance)	17	11	2
Escherichia coli serotype O:183/Shigella boydii serotype O:10 O antigen biosynthesis	9	1	1
Escherichia coli serotype O:8 O antigen biosynthesis	9	1	1
Escherichia coli serotype O:169 O antigen biosynthesis	9	1	1
superpathway of enterobacterial common antigen biosynthesis	10	8	1
poly(3-O-β-D-glucopyranosyl-N-acetylgalactosamine 1-phosphate) wall teichoic acid biosynthesis	10	1	1
Escherichia coli serotype O:9a O antigen biosynthesis	10	1	1
Escherichia coli serotype O:9 O antigen biosynthesis	10	1	1
cytochrome c biogenesis (system I type)	11	9	1
superpathway of candicidin biosynthesis	11	4	1
poly(glycerol phosphate) wall teichoic acid biosynthesis	11	1	1
peptidoglycan biosynthesis I (meso-diaminopimelate containing)	12	12	1
poly(ribitol phosphate) wall teichoic acid biosynthesis I (B. subtilis)	12	1	1
poly(ribitol phosphate) wall teichoic acid biosynthesis II (S. aureus)	14	1	1
peptidoglycan biosynthesis III (mycobacteria)	15	11	1
H. pylori 26695 O-antigen biosynthesis	21	1	1