Experiment set14IT057 for Pseudomonas simiae WCS417

Compare to:

Vogels_fungal_media 0.1X

200 most important genes:

  gene name fitness t score description  
PS417_08245 -5.6 -1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01560 -5.2 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_27795 -5.0 -1.2 orotate phosphoribosyltransferase compare
PS417_23995 -4.4 -1.1 preprotein translocase subunit SecG compare
PS417_07170 -4.2 -5.7 hypothetical protein compare
PS417_22450 -4.0 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_00180 -4.0 -2.0 tryptophan synthase subunit alpha compare
PS417_01580 -3.9 -1.3 imidazole glycerol phosphate synthase compare
PS417_22565 -3.9 -1.0 formyltetrahydrofolate deformylase compare
PS417_24745 -3.8 -4.9 gamma-glutamyl phosphate reductase compare
PS417_26730 -3.8 -1.3 pyrroline-5-carboxylate reductase compare
PS417_08230 -3.5 -1.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21655 -3.3 -1.1 aspartate kinase compare
PS417_01915 -3.2 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23800 -3.2 -10.6 ketol-acid reductoisomerase compare
PS417_03455 -3.1 -2.1 type III secretion protein compare
PS417_00185 -3.1 -3.3 tryptophan synthase subunit beta compare
PS417_00755 -3.1 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_18585 -3.1 -3.6 3-isopropylmalate dehydrogenase compare
PS417_04415 -3.0 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18560 -3.0 -6.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25715 -3.0 -4.2 anthranilate phosphoribosyltransferase compare
PS417_08185 -2.9 -4.8 glycosyl transferase compare
PS417_02415 -2.9 -3.8 phosphoserine phosphatase compare
PS417_25725 -2.8 -9.6 anthranilate synthase component I compare
PS417_21125 -2.8 -6.9 phosphoadenosine phosphosulfate reductase compare
PS417_22850 -2.8 -4.6 virulence factor family protein compare
PS417_04365 -2.7 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_18600 -2.7 -2.6 isopropylmalate isomerase compare
PS417_23545 -2.7 -2.1 gamma-glutamyl kinase compare
PS417_27245 -2.7 -3.6 aminotransferase DegT compare
PS417_16465 -2.7 -5.5 sirohydrochlorin ferrochelatase compare
PS417_14065 -2.6 -4.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_03260 -2.6 -1.2 5S ribosomal RNA compare
PS417_08190 -2.6 -8.5 membrane protein compare
PS417_17215 -2.6 -2.8 peptidylprolyl isomerase compare
PS417_26740 -2.6 -7.6 homoserine acetyltransferase compare
PS417_22570 -2.6 -0.9 H-NS histone compare
PS417_12855 -2.6 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04650 -2.5 -0.9 D-alanine--D-alanine ligase compare
PS417_12290 -2.5 -4.6 sulfite reductase compare
PS417_13855 -2.5 -1.0 acetyl-CoA acetyltransferase compare
PS417_15890 -2.5 -2.1 RNA polymerase sigma factor compare
PS417_05595 -2.4 -7.1 ornithine carbamoyltransferase compare
PS417_02000 -2.4 -8.4 glutamate synthase compare
PS417_21480 -2.3 -1.2 23S rRNA pseudouridylate synthase compare
PS417_04420 -2.3 -5.7 histidinol dehydrogenase compare
PS417_23770 -2.3 -2.1 exodeoxyribonuclease V subunit alpha compare
PS417_01570 -2.3 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22845 -2.3 -10.3 membrane protein compare
PS417_01850 -2.3 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23915 -2.3 -2.3 pantoate--beta-alanine ligase compare
PS417_16720 -2.2 -1.2 membrane protein compare
PS417_21510 -2.2 -1.7 histidine kinase compare
PS417_09235 -2.2 -0.9 molecular chaperone compare
PS417_25720 -2.2 -4.1 anthranilate synthase component II compare
PS417_20160 -2.2 -3.2 cysteine synthase compare
PS417_01575 -2.1 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_00045 -2.1 -1.4 glycerol acyltransferase compare
PS417_02005 -2.1 -6.5 glutamate synthase compare
PS417_17645 -2.1 -1.7 RND transporter compare
PS417_18545 -2.1 -3.2 cell division protein compare
PS417_26985 -2.1 -6.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_18595 -2.1 -2.8 3-isopropylmalate dehydratase compare
PS417_23805 -2.1 -3.7 acetolactate synthase 3 regulatory subunit compare
PS417_18530 -2.1 -4.3 O-succinylhomoserine sulfhydrylase compare
PS417_23810 -2.0 -6.2 acetolactate synthase 3 catalytic subunit compare
PS417_10675 -2.0 -1.0 TetR family transcriptional regulator compare
PS417_15705 -2.0 -2.2 nitrate reductase compare
PS417_09150 -2.0 -2.6 energy transducer TonB compare
PS417_03560 -2.0 -1.3 GTP-binding protein compare
PS417_02510 -2.0 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_04380 -2.0 -0.8 ABC transporter permease compare
PS417_22210 -2.0 -1.8 AraC family transcriptional regulator compare
PS417_21000 -2.0 -1.9 CrfX protein compare
PS417_11705 -1.9 -5.5 cyclic peptide transporter compare
PS417_05365 -1.9 -1.7 FAD-binding protein compare
PS417_06540 -1.9 -1.5 membrane protein compare
PS417_27040 -1.9 -1.9 3-phosphoglycerate dehydrogenase compare
PS417_09590 -1.8 -2.8 membrane protein compare
PS417_12595 -1.8 -1.4 transcriptional regulator compare
PS417_08335 -1.8 -1.5 hypothetical protein compare
PS417_08195 -1.8 -5.7 hypothetical protein compare
PS417_12870 -1.8 -1.3 enoyl-CoA hydratase compare
PS417_26745 -1.8 -4.5 methionine biosynthesis protein MetW compare
PS417_01715 -1.8 -1.0 hypothetical protein compare
PS417_23110 -1.8 -4.6 2-isopropylmalate synthase compare
PS417_01565 -1.8 -2.6 imidazole glycerol phosphate synthase compare
PS417_01920 -1.7 -0.8 ATP-dependent protease subunit HslV compare
PS417_09595 -1.7 -3.0 membrane protein compare
PS417_20130 -1.7 -6.6 dehydrogenase compare
PS417_01855 -1.7 -1.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_25710 -1.7 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_03935 -1.7 -1.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_20650 -1.7 -6.4 hypothetical protein compare
PS417_00705 -1.7 -1.1 MarR family transcriptional regulator compare
PS417_06375 -1.7 -0.8 deoxycytidine triphosphate deaminase compare
PS417_04385 -1.7 -2.8 organic solvent ABC transporter substrate-binding protein compare
PS417_22520 -1.6 -1.4 histidine kinase compare
PS417_08205 -1.6 -2.6 acetyltransferase compare
PS417_22690 -1.6 -2.9 phosphogluconate dehydratase compare
PS417_13510 -1.6 -0.9 polyketide cyclase compare
PS417_16490 -1.6 -1.2 cell division protein FtsK compare
PS417_17780 -1.6 -1.1 Ais protein compare
PS417_20115 -1.6 -2.0 hypothetical protein compare
PS417_03925 -1.6 -3.7 nicotinate-nucleotide pyrophosphorylase compare
PS417_04585 -1.6 -1.3 hypothetical protein compare
PS417_27835 -1.6 -3.4 endoribonuclease compare
PS417_26995 -1.6 -4.0 phosphoserine phosphatase compare
PS417_01965 -1.5 -1.2 fimbriae biosynthesis protein compare
PS417_02560 -1.5 -1.6 23S rRNA methyltransferase compare
PS417_03785 -1.5 -1.5 pilus assembly protein PilV compare
PS417_24710 -1.5 -4.3 lipoprotein compare
PS417_04275 -1.5 -7.4 hypothetical protein compare
PS417_07710 -1.5 -3.4 membrane protein compare
PS417_13820 -1.5 -3.7 UDP-glucose 6-dehydrogenase compare
PS417_09085 -1.5 -0.9 hypothetical protein compare
PS417_14075 -1.5 -1.3 hypothetical protein compare
PS417_13795 -1.5 -5.8 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_26890 -1.5 -3.4 dihydroxy-acid dehydratase compare
PS417_06200 -1.5 -4.4 protein-PII uridylyltransferase compare
PS417_15805 -1.5 -1.3 transporter compare
PS417_04305 -1.5 -1.1 aspartate ammonia-lyase compare
PS417_05515 -1.5 -5.1 hypothetical protein compare
PS417_08200 -1.4 -1.9 hypothetical protein compare
PS417_10245 -1.4 -1.3 hypothetical protein compare
PS417_07470 -1.4 -0.9 hypothetical protein compare
PS417_05695 -1.4 -2.8 transcriptional regulator compare
PS417_22385 -1.4 -4.7 quinolinate synthase A compare
PS417_09600 -1.4 -2.4 glycosyl transferase family 1 compare
PS417_13790 -1.4 -3.1 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_14805 -1.4 -1.4 AraC family transcriptional regulator compare
PS417_11810 -1.4 -2.4 oxidoreductase compare
PS417_06145 -1.3 -0.8 hypothetical protein compare
PS417_20825 -1.3 -1.7 drug:proton antiporter compare
PS417_02915 -1.3 -2.0 precorrin-3B C17-methyltransferase compare
PS417_17240 -1.3 -1.8 trigger factor compare
PS417_00535 -1.3 -2.0 Holliday junction resolvase compare
PS417_06945 -1.3 -1.0 membrane protein compare
PS417_01290 -1.3 -1.2 ADP-ribose diphosphatase compare
PS417_05885 -1.3 -3.8 potassium transporter Kup compare
PS417_12540 -1.3 -1.8 hypothetical protein compare
PS417_07620 -1.3 -1.5 beta-hexosaminidase compare
PS417_13645 -1.3 -2.1 ABC transporter compare
PS417_13735 -1.3 -0.8 hypothetical protein compare
PS417_24935 -1.3 -0.9 hypothetical protein compare
PS417_26150 -1.3 -2.5 acyltransferase compare
PS417_01955 -1.3 -4.1 peptidase compare
PS417_13805 -1.3 -3.8 4-amino-4-deoxy-L-arabinose transferase compare
PS417_09615 -1.3 -2.6 glycosyl transferase family 1 compare
PS417_19955 -1.3 -1.0 hypothetical protein compare
PS417_04290 -1.3 -2.2 hypothetical protein compare
PS417_04300 -1.3 -2.1 FagA protein compare
PS417_15450 -1.3 -2.8 ABC transporter permease compare
PS417_05130 -1.3 -1.7 glutaredoxin compare
PS417_07595 -1.3 -2.1 PasA protein compare
PS417_13800 -1.3 -2.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_24370 -1.2 -0.5 (2Fe-2S)-binding protein compare
PS417_05475 -1.2 -2.1 arginase compare
PS417_27665 -1.2 -2.7 diguanylate cyclase compare
PS417_01875 -1.2 -1.5 polyhydroxyalkanoic acid system protein compare
PS417_23375 -1.2 -1.0 cytochrome C oxidase compare
PS417_19590 -1.2 -2.8 enoyl-CoA hydratase compare
PS417_23160 -1.2 -1.5 50S rRNA methyltransferase compare
PS417_27435 -1.2 -3.7 polyphosphate kinase compare
PS417_04960 -1.2 -0.7 hypothetical protein compare
PS417_07615 -1.2 -2.9 TetR family transcriptional regulator compare
PS417_19065 -1.2 -0.7 monooxygenase compare
PS417_15285 -1.2 -0.9 type VI secretion protein compare
PS417_21700 -1.2 -2.5 arginine N-succinyltransferase compare
PS417_14600 -1.2 -1.7 bleomycin resistance protein compare
PS417_17590 -1.2 -1.2 ABC transporter substrate-binding protein compare
PS417_17855 -1.2 -2.4 major facilitator transporter compare
PS417_06500 -1.1 -0.8 hypothetical protein compare
PS417_00195 -1.1 -1.4 hypothetical protein compare
PS417_21830 -1.1 -2.3 TetR family transcriptional regulator compare
PS417_08225 -1.1 -2.1 acetolactate synthase compare
PS417_20665 -1.1 -2.9 hypothetical protein compare
PS417_12565 -1.1 -0.8 2-dehydro-3-deoxygluconokinase compare
PS417_27000 -1.1 -2.2 membrane protein compare
PS417_15035 -1.1 -1.0 alkylhydroperoxidase compare
PS417_27035 -1.1 -1.4 FAD-linked oxidase compare
PS417_07140 -1.1 -2.0 peptidase M48 compare
PS417_01605 -1.1 -0.8 phosphoglycerate mutase compare
PS417_27865 -1.1 -1.7 LysR family transcriptional regulator compare
PS417_23950 -1.1 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_15105 -1.1 -3.7 membrane protein compare
PS417_06335 -1.1 -1.7 S-formylglutathione hydrolase compare
PS417_12325 -1.1 -1.6 precorrin-4 C11-methyltransferase compare
PS417_18020 -1.1 -1.2 hypothetical protein compare
PS417_14030 -1.1 -2.6 hypothetical protein compare
PS417_16680 -1.1 -1.5 MFS transporter compare
PS417_27515 -1.1 -2.0 heme biosynthesis protein HemY compare
PS417_11925 -1.1 -1.2 hypothetical protein compare
PS417_27640 -1.1 -0.8 TetR family transcriptional regulator compare
PS417_11075 -1.1 -1.9 hydroxypyruvate isomerase compare
PS417_23135 -1.0 -1.0 GTP-binding protein compare
PS417_28350 -1.0 -2.6 fatty acid methyltransferase compare
PS417_06530 -1.0 -1.1 membrane protein compare
PS417_16310 -1.0 -2.8 membrane protein compare


Specific Phenotypes

For 2 genes in this experiment