Experiment set14IT056 for Pseudomonas simiae WCS417

Compare to:

Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_06375 -4.8 -1.4 deoxycytidine triphosphate deaminase compare
PS417_08335 -3.8 -2.5 hypothetical protein compare
PS417_23545 -3.1 -2.7 gamma-glutamyl kinase compare
PS417_23770 -3.0 -2.7 exodeoxyribonuclease V subunit alpha compare
PS417_20985 -3.0 -2.0 porin compare
PS417_13075 -2.9 -1.4 hypothetical protein compare
PS417_13455 -2.7 -3.8 alkaline proteinase inhibitor compare
PS417_18310 -2.6 -1.8 hypothetical protein compare
PS417_27795 -2.6 -1.3 orotate phosphoribosyltransferase compare
PS417_08220 -2.6 -1.1 epimerase compare
PS417_27800 -2.5 -1.7 exodeoxyribonuclease III compare
PS417_02720 -2.5 -1.3 TetR family transcriptional regulator compare
PS417_22375 -2.4 -1.0 cold-shock protein compare
PS417_07170 -2.3 -5.2 hypothetical protein compare
PS417_27300 -2.3 -0.9 cell division protein ZapA compare
PS417_22445 -2.3 -5.8 ATP-dependent DNA helicase RuvB compare
PS417_26730 -2.3 -1.5 pyrroline-5-carboxylate reductase compare
PS417_24745 -2.2 -3.0 gamma-glutamyl phosphate reductase compare
PS417_07140 -2.1 -3.8 peptidase M48 compare
PS417_21870 -2.1 -2.7 glycerophosphodiester phosphodiesterase compare
PS417_00180 -2.0 -2.0 tryptophan synthase subunit alpha compare
PS417_21430 -2.0 -2.2 3-oxoacyl-ACP synthase compare
PS417_21480 -2.0 -1.7 23S rRNA pseudouridylate synthase compare
PS417_05535 -1.9 -1.8 Fis family transcriptional regulator compare
PS417_12355 -1.9 -2.2 magnesium chelatase compare
PS417_04275 -1.9 -8.9 hypothetical protein compare
PS417_04220 -1.8 -1.4 4-carboxymuconolactone decarboxylase compare
PS417_22060 -1.8 -1.1 hypothetical protein compare
PS417_05100 -1.8 -1.9 RNA polymerase sigma factor compare
PS417_24935 -1.8 -1.4 hypothetical protein compare
PS417_04375 -1.8 -2.3 ABC transporter ATP-binding protein compare
PS417_08200 -1.7 -2.7 hypothetical protein compare
PS417_15885 -1.7 -1.9 GCN5 family acetyltransferase compare
PS417_26990 -1.7 -0.9 RNA pyrophosphohydrolase compare
PS417_19720 -1.7 -1.7 DNA-binding protein compare
PS417_01915 -1.6 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_09600 -1.6 -4.3 glycosyl transferase family 1 compare
PS417_23995 -1.6 -0.9 preprotein translocase subunit SecG compare
PS417_17215 -1.6 -2.5 peptidylprolyl isomerase compare
PS417_14810 -1.5 -2.2 Fosmidomycin resistance protein compare
PS417_15090 -1.5 -2.2 hypothetical protein compare
PS417_15805 -1.5 -1.5 transporter compare
PS417_11705 -1.5 -6.1 cyclic peptide transporter compare
PS417_05830 -1.5 -3.2 hypothetical protein compare
PS417_15400 -1.5 -1.6 hypothetical protein compare
PS417_23380 -1.5 -1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_26370 -1.4 -3.7 RNA helicase compare
PS417_27870 -1.4 -2.4 ATP-dependent DNA helicase RecG compare
PS417_07945 -1.4 -3.0 hypothetical protein compare
PS417_20785 -1.4 -2.2 transcriptional regulator compare
PS417_01920 -1.4 -0.9 ATP-dependent protease subunit HslV compare
PS417_21630 -1.4 -1.9 magnesium transporter compare
PS417_00480 -1.4 -4.1 hypothetical protein compare
PS417_16490 -1.4 -1.5 cell division protein FtsK compare
PS417_28350 -1.3 -4.3 fatty acid methyltransferase compare
PS417_23490 -1.3 -1.3 dihydrofolate reductase compare
PS417_26605 -1.3 -0.9 malonate decarboxylase subunit beta compare
PS417_06730 -1.3 -1.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_06600 -1.3 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_16510 -1.3 -3.7 Clp protease ClpX compare
PS417_20720 -1.3 -1.8 cbb3-type cytochrome c oxidase subunit I compare
PS417_11055 -1.3 -2.9 AraC family transcriptional regulator compare
PS417_22795 -1.3 -1.8 exclusion suppressor FxsA compare
PS417_06530 -1.3 -2.0 membrane protein compare
PS417_06735 -1.3 -1.5 3-oxoadipate enol-lactonase compare
PS417_11810 -1.3 -1.7 oxidoreductase compare
PS417_18250 -1.2 -2.5 chemotaxis protein compare
PS417_12855 -1.2 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23025 -1.2 -3.4 murein transglycosylase compare
PS417_24460 -1.2 -1.4 hypothetical protein compare
PS417_24225 -1.2 -1.9 hypothetical protein compare
PS417_08155 -1.2 -1.1 integration host factor subunit beta compare
PS417_03260 -1.2 -0.9 5S ribosomal RNA compare
PS417_13990 -1.2 -2.0 LysR family transcriptional regulator compare
PS417_08410 -1.2 -2.4 hypothetical protein compare
PS417_08205 -1.2 -3.2 acetyltransferase compare
PS417_17240 -1.2 -2.0 trigger factor compare
PS417_10480 -1.2 -1.9 glutathione S-transferase compare
PS417_08025 -1.2 -1.4 acetylornithine aminotransferase compare
PS417_03190 -1.2 -2.0 antibiotic biosynthesis monooxygenase compare
PS417_28225 -1.2 -1.1 hypothetical protein compare
PS417_00490 -1.2 -4.1 iron ABC transporter ATP-binding protein compare
PS417_28405 -1.1 -2.3 hypothetical protein compare
PS417_27075 -1.1 -2.9 thiol-disulfide isomerase compare
PS417_05865 -1.1 -1.2 hypothetical protein compare
PS417_14070 -1.1 -1.5 hypothetical protein compare
PS417_24615 -1.1 -0.9 hypothetical protein compare
PS417_02365 -1.1 -1.8 hypothetical protein compare
PS417_01145 -1.1 -0.8 taurine transporter ATP-binding subunit compare
PS417_21850 -1.1 -1.2 LysR family transcriptional regulator compare
PS417_18070 -1.1 -0.9 general secretion pathway protein GspH compare
PS417_18545 -1.1 -1.2 cell division protein compare
PS417_22775 -1.0 -4.8 histidine kinase compare
PS417_02880 -1.0 -1.2 copper chaperone compare
PS417_13725 -1.0 -2.4 membrane protein compare
PS417_14830 -1.0 -3.2 Cro/Cl family transcriptional regulator compare
PS417_02270 -1.0 -3.2 carbamoyltransferase compare
PS417_12280 -1.0 -1.1 MerR family transcriptional regulator compare
PS417_25815 -1.0 -1.4 magnesium transporter ApaG compare
PS417_22050 -1.0 -2.6 ribonuclease BN compare
PS417_06895 -1.0 -2.6 DNA-binding protein compare
PS417_20950 -1.0 -2.3 hypothetical protein compare
PS417_27520 -1.0 -1.4 uroporphyrin-III methyltransferase compare
PS417_12155 -1.0 -2.3 transporter compare
PS417_23810 -1.0 -5.2 acetolactate synthase 3 catalytic subunit compare
PS417_19955 -1.0 -1.3 hypothetical protein compare
PS417_07710 -1.0 -3.2 membrane protein compare
PS417_00670 -1.0 -2.5 RNA polymerase sigma factor compare
PS417_11710 -1.0 -3.6 N(5)-hydroxyornithine transformylase PvdF compare
PS417_14315 -1.0 -1.7 2,5-dioxovalerate dehydrogenase compare
PS417_09590 -1.0 -1.9 membrane protein compare
PS417_27815 -0.9 -0.6 hypothetical protein compare
PS417_03785 -0.9 -1.1 pilus assembly protein PilV compare
PS417_22520 -0.9 -1.2 histidine kinase compare
PS417_01585 -0.9 -2.7 amino acid ABC transporter substrate-binding protein compare
PS417_03730 -0.9 -1.7 phosphate acetyltransferase compare
PS417_23135 -0.9 -1.5 GTP-binding protein compare
PS417_15390 -0.9 -1.8 hypothetical protein compare
PS417_28270 -0.9 -1.5 hypothetical protein compare
PS417_08190 -0.9 -6.1 membrane protein compare
PS417_01045 -0.9 -2.0 RND transporter compare
PS417_13895 -0.9 -2.3 chemotaxis protein CheB compare
PS417_17470 -0.9 -1.4 LuxR family transcriptional regulator compare
PS417_09695 -0.9 -1.1 hydrolase compare
PS417_15110 -0.9 -2.0 protein BatD compare
PS417_20650 -0.9 -3.5 hypothetical protein compare
PS417_22850 -0.9 -3.2 virulence factor family protein compare
PS417_01900 -0.9 -3.0 poly(3-hydroxyalkanoate) depolymerase compare
PS417_13185 -0.9 -1.3 RND transporter compare
PS417_12840 -0.9 -1.7 TetR family transcriptional regulator compare
PS417_23370 -0.9 -2.3 protoheme IX farnesyltransferase compare
PS417_23105 -0.9 -1.0 hypothetical protein compare
PS417_05505 -0.9 -4.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_10740 -0.9 -2.7 hypothetical protein compare
PS417_18235 -0.9 -1.8 nitrile hydratase compare
PS417_14520 -0.9 -3.6 methyltransferase compare
PS417_20855 -0.9 -0.9 hypothetical protein compare
PS417_00510 -0.9 -0.8 membrane protein compare
PS417_15085 -0.9 -2.9 ATPase AAA compare
PS417_08125 -0.9 -0.3 prephenate dehydratase compare
PS417_13295 -0.9 -4.6 TetR family transcriptional regulator compare
PS417_21000 -0.9 -0.9 CrfX protein compare
PS417_08135 -0.9 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15135 -0.9 -0.8 hypothetical protein compare
PS417_18425 -0.8 -1.2 sporulation protein compare
PS417_27585 -0.8 -1.2 diaminopimelate epimerase compare
PS417_14515 -0.8 -0.9 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_14015 -0.8 -1.6 LysR family transcriptional regulator compare
PS417_15780 -0.8 -1.8 membrane protein compare
PS417_05510 -0.8 -2.0 alpha/beta hydrolase compare
PS417_28295 -0.8 -1.9 glutamine synthetase compare
PS417_11475 -0.8 -1.9 membrane protein compare
PS417_06335 -0.8 -1.6 S-formylglutathione hydrolase compare
PS417_22870 -0.8 -1.4 lipoprotein compare
PS417_14975 -0.8 -1.2 tRNA hydroxylase compare
PS417_22575 -0.8 -3.3 exonuclease I compare
PS417_08225 -0.8 -1.7 acetolactate synthase compare
PS417_20115 -0.8 -1.2 hypothetical protein compare
PS417_20160 -0.8 -1.7 cysteine synthase compare
PS417_10060 -0.8 -1.1 hypothetical protein compare
PS417_07620 -0.8 -1.2 beta-hexosaminidase compare
PS417_10240 -0.8 -1.8 hypothetical protein compare
PS417_27505 -0.8 -1.9 transcriptional regulator compare
PS417_08230 -0.8 -1.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_14760 -0.8 -2.4 membrane protein compare
PS417_03815 -0.8 -1.3 DNA transporter compare
PS417_08195 -0.8 -3.5 hypothetical protein compare
PS417_07615 -0.8 -2.7 TetR family transcriptional regulator compare
PS417_20980 -0.8 -2.9 uroporphyrin-III methyltransferase compare
PS417_09020 -0.8 -1.3 esterase compare
PS417_08365 -0.8 -0.6 hypothetical protein compare
PS417_09625 -0.8 -1.5 sugar ABC transporter substrate-binding protein compare
PS417_10225 -0.8 -1.7 chitinase compare
PS417_01560 -0.8 -0.8 imidazoleglycerol-phosphate dehydratase compare
PS417_26685 -0.8 -0.7 hypothetical protein compare
PS417_01135 -0.8 -2.4 taurine dioxygenase compare
PS417_15325 -0.8 -0.7 type VI secretion protein compare
PS417_13180 -0.8 -2.3 AraC family transcriptional regulator compare
PS417_11340 -0.8 -1.6 prevent-host-death protein compare
PS417_26985 -0.8 -2.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05345 -0.8 -1.6 exotoxin compare
PS417_22210 -0.8 -0.9 AraC family transcriptional regulator compare
PS417_24710 -0.8 -4.8 lipoprotein compare
PS417_08730 -0.8 -1.1 cytochrome C compare
PS417_09245 -0.8 -1.0 recombinase RdgC compare
PS417_06125 -0.8 -1.5 hypothetical protein compare
PS417_27165 -0.8 -2.9 alkanesulfonate monooxygenase compare
PS417_17490 -0.8 -1.3 ABC transporter ATP-binding protein compare
PS417_14175 -0.8 -2.5 ArsC family transcriptional regulator compare
PS417_16950 -0.8 -1.2 fimbrial protein compare
PS417_12540 -0.7 -1.5 hypothetical protein compare
PS417_22895 -0.7 -2.8 tyrosine recombinase XerD compare
PS417_05255 -0.7 -2.2 hypothetical protein compare
PS417_01280 -0.7 -1.4 peptidoglycan-binding protein LysM compare
PS417_01400 -0.7 -1.2 hypothetical protein compare
PS417_06685 -0.7 -0.5 beta-ketoadipyl CoA thiolase compare
PS417_19090 -0.7 -1.7 hypothetical protein compare
PS417_15875 -0.7 -0.9 LuxR family transcriptional regulator compare
PS417_09740 -0.7 -1.8 RNA polymerase subunit sigma-24 compare
PS417_20055 -0.7 -1.6 cob(II)yrinic acid a,c-diamide reductase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant control experiments

For supernatant control Vogels_fungal_media across organisms