Experiment set14IT055 for Pseudomonas simiae WCS417

Compare to:

Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

200 most detrimental genes:

  gene name fitness t score description  
PS417_19825 +2.2 16.6 ATPase AAA compare
PS417_19885 +1.7 4.4 flagellar basal body rod protein FlgG compare
PS417_00755 +1.7 1.5 biofilm PGA synthesis protein PgaD compare
PS417_21585 +1.6 10.6 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_07875 +1.5 2.1 hypothetical protein compare
PS417_19695 +1.5 9.5 flagellar biosynthesis sigma factor compare
PS417_09085 +1.5 1.9 hypothetical protein compare
PS417_21570 +1.5 9.9 flagellar basal body rod protein FlgB compare
PS417_23950 +1.4 1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_19725 +1.4 4.7 flagellar biosynthesis protein FlhB compare
PS417_19765 +1.4 9.1 flagellar hook-length control protein compare
PS417_21565 +1.4 6.6 flagellar basal body rod protein FlgC compare
PS417_19795 +1.3 9.0 flagellar assembly protein FliH compare
PS417_28450 +1.3 2.2 XRE family transcriptional regulator compare
PS417_19730 +1.3 6.0 flagellar biosynthesis protein FliR compare
PS417_07865 +1.3 1.6 hypothetical protein compare
PS417_19735 +1.3 5.0 flagellar biosynthesis protein FliQ compare
PS417_21555 +1.3 8.5 flagellar hook protein FlgE compare
PS417_16520 +1.3 2.4 cold-shock protein compare
PS417_19740 +1.2 8.3 flagellar biosynthesis protein flip compare
PS417_19880 +1.2 7.3 flagellar basal body L-ring protein compare
PS417_19870 +1.2 4.2 flagellar rod assembly protein FlgJ compare
PS417_27875 +1.2 5.8 histidine kinase compare
PS417_19785 +1.2 7.2 flagellar biogenesis protein compare
PS417_00845 +1.2 2.2 transcriptional regulator compare
PS417_19705 +1.2 2.3 flagellar biosynthesis regulator FlhF compare
PS417_19755 +1.2 3.3 flagellar motor switch protein FliM compare
PS417_19645 +1.2 1.8 chemotaxis protein compare
PS417_20880 +1.1 2.7 GntR family transcriptional regulator compare
PS417_10405 +1.1 1.6 filamentous hemagglutinin compare
PS417_19860 +1.1 9.0 flagellar hook protein FlgL compare
PS417_07870 +1.1 2.8 hypothetical protein compare
PS417_23475 +1.1 2.2 hypothetical protein compare
PS417_19710 +1.1 8.3 flagellar biosynthesis protein FlhA compare
PS417_19745 +1.1 6.7 flagellar assembly protein FliO compare
PS417_10245 +1.1 2.4 hypothetical protein compare
PS417_19865 +1.1 7.5 flagellar hook protein FlgK compare
PS417_17160 +1.1 1.9 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_11615 +1.0 2.2 urea ABC transporter ATP-binding protein compare
PS417_10665 +1.0 1.1 hypothetical protein compare
PS417_19830 +1.0 4.4 flagellar assembly protein FliT compare
PS417_27815 +1.0 2.1 hypothetical protein compare
PS417_12400 +1.0 2.4 oxidoreductase compare
PS417_14070 +1.0 2.6 hypothetical protein compare
PS417_16885 +1.0 2.7 hypothetical protein compare
PS417_06600 +1.0 1.3 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_06845 +1.0 1.5 lipoprotein compare
PS417_24135 +1.0 1.4 hypothetical protein compare
PS417_19800 +0.9 3.3 flagellar motor switch protein FliG compare
PS417_10060 +0.9 1.5 hypothetical protein compare
PS417_26770 +0.9 3.2 tRNA (guanine-N7)-methyltransferase compare
PS417_21870 +0.9 1.3 glycerophosphodiester phosphodiesterase compare
PS417_14590 +0.9 1.0 LysR family transcriptional regulator compare
PS417_26470 +0.9 2.3 cytochrome C compare
PS417_24575 +0.9 1.7 hypothetical protein compare
PS417_08250 +0.9 2.7 competence protein ComEA compare
PS417_11820 +0.9 2.5 histidine kinase compare
PS417_13140 +0.9 1.8 oxidoreductase compare
PS417_15880 +0.9 2.5 GNAT family acetyltransferase compare
PS417_04705 +0.9 2.3 hypothetical protein compare
PS417_04185 +0.9 2.2 hypothetical protein compare
PS417_11945 +0.9 1.7 hypothetical protein compare
PS417_03630 +0.8 2.5 hypothetical protein compare
PS417_21595 +0.8 2.6 flagellar biosynthesis protein FlgN compare
PS417_03340 +0.8 2.2 gluconate transporter compare
PS417_17980 +0.8 2.5 ABC transporter permease compare
PS417_21070 +0.8 2.0 aconitate hydratase compare
PS417_14540 +0.8 1.5 cytochrome C oxidase subunit III compare
PS417_20705 +0.8 2.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_20685 +0.8 3.5 CAAX protease compare
PS417_15325 +0.8 1.2 type VI secretion protein compare
PS417_16320 +0.8 2.5 protein tyrosine phosphatase compare
PS417_00345 +0.8 1.3 copper-binding protein compare
PS417_04875 +0.8 1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_18025 +0.8 2.2 cytochrome C compare
PS417_04050 +0.8 2.3 peptide ABC transporter ATP-binding protein compare
PS417_02335 +0.8 1.0 multidrug DMT transporter compare
PS417_19805 +0.8 3.6 flagellar M-ring protein FliF compare
PS417_19790 +0.7 1.5 ATP synthase compare
PS417_15820 +0.7 2.0 universal stress protein UspA compare
PS417_07840 +0.7 2.1 hypothetical protein compare
PS417_01715 +0.7 0.9 hypothetical protein compare
PS417_26850 +0.7 0.7 twin-arginine translocation pathway signal protein compare
PS417_15305 +0.7 1.9 type VI secretion protein compare
PS417_08160 +0.7 2.9 hypothetical protein compare
PS417_27990 +0.7 1.5 hypothetical protein compare
PS417_03385 +0.7 1.1 flavin reductase compare
PS417_00925 +0.7 1.0 hypothetical protein compare
PS417_06370 +0.7 1.3 cold-shock protein compare
PS417_01750 +0.7 2.3 histidine ammonia-lyase compare
PS417_09790 +0.7 3.6 hypothetical protein compare
PS417_19840 +0.7 4.7 flagellar cap protein FliD compare
PS417_23505 +0.7 2.7 cell division protein DedD compare
PS417_21560 +0.7 2.7 flagellar basal body rod modification protein FlgD compare
PS417_14255 +0.7 1.7 phosphate import ATP-binding protein PstB compare
PS417_07795 +0.7 1.6 hypothetical protein compare
PS417_25170 +0.7 3.4 FAD-binding protein compare
PS417_03430 +0.7 2.6 methyltransferase type 11 compare
PS417_12165 +0.7 1.7 microcin ABC transporter ATP-binding protein compare
PS417_11400 +0.7 1.3 phosphoglycerate mutase compare
PS417_26260 +0.7 1.0 hypothetical protein compare
PS417_05635 +0.7 4.0 membrane protein compare
PS417_26990 +0.7 0.8 RNA pyrophosphohydrolase compare
PS417_19665 +0.7 2.3 flagellar motor protein MotD compare
PS417_10225 +0.7 1.8 chitinase compare
PS417_08320 +0.7 1.5 metal-chelation protein CHAD compare
PS417_12520 +0.7 1.8 hypothetical protein compare
PS417_08620 +0.7 0.8 hypothetical protein compare
PS417_07845 +0.7 1.6 transcriptional regulator compare
PS417_04835 +0.6 0.8 hemolysin D compare
PS417_25045 +0.6 3.8 hypothetical protein compare
PS417_06040 +0.6 2.4 hypothetical protein compare
PS417_23310 +0.6 2.0 glyoxalase compare
PS417_24155 +0.6 1.0 ATP-binding protein compare
PS417_23170 +0.6 1.3 FeS assembly protein IscX compare
PS417_01430 +0.6 1.6 chromosome segregation protein SMC compare
PS417_15445 +0.6 2.6 ABC transporter permease compare
PS417_06860 +0.6 2.5 methyltransferase compare
PS417_13735 +0.6 1.0 hypothetical protein compare
PS417_24860 +0.6 2.2 hypothetical protein compare
PS417_06500 +0.6 1.0 hypothetical protein compare
PS417_08220 +0.6 0.7 epimerase compare
PS417_27380 +0.6 2.1 GntR family transcriptional regulator compare
PS417_16560 +0.6 0.9 GNAT family acetyltransferase compare
PS417_18630 +0.6 1.9 tRNA-dihydrouridine synthase C compare
PS417_18140 +0.6 1.3 hypothetical protein compare
PS417_14280 +0.6 1.1 hypothetical protein compare
PS417_06480 +0.6 2.5 hypothetical protein compare
PS417_06355 +0.6 1.5 protein-L-isoaspartate O-methyltransferase compare
PS417_10445 +0.6 1.4 LysR family transcriptional regulator compare
PS417_25275 +0.6 2.3 hypothetical protein compare
PS417_26695 +0.6 0.8 uracil phosphoribosyltransferase compare
PS417_16770 +0.6 3.2 pyridine nucleotide-disulfide oxidoreductase compare
PS417_01375 +0.6 2.1 hypothetical protein compare
PS417_02440 +0.6 1.4 flagellar motor protein MotB compare
PS417_27315 +0.6 0.8 hypothetical protein compare
PS417_08770 +0.6 2.0 hypothetical protein compare
PS417_02510 +0.6 2.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26545 +0.6 3.1 16S rRNA methyltransferase compare
PS417_14245 +0.6 1.8 hypothetical protein compare
PS417_21185 +0.6 1.4 hypothetical protein compare
PS417_02320 +0.6 1.6 metal ABC transporter ATPase compare
PS417_02165 +0.6 1.1 ZapA compare
PS417_11070 +0.6 2.1 rhizopine-binding protein compare
PS417_17290 +0.6 3.4 RND transporter compare
PS417_08580 +0.6 2.2 histidine kinase compare
PS417_15930 +0.6 2.2 thioredoxin reductase compare
PS417_23835 +0.6 2.1 hypothetical protein compare
PS417_22150 +0.6 1.9 D-mannose isomerase (EC 5.3.1.7) (from data) compare
PS417_17795 +0.6 1.4 ABC transporter permease compare
PS417_17295 +0.6 2.0 RND transporter MFP subunit compare
PS417_13605 +0.6 2.4 short-chain dehydrogenase compare
PS417_04960 +0.6 1.1 hypothetical protein compare
PS417_25635 +0.5 3.0 biotin--protein ligase compare
PS417_17960 +0.5 1.9 LysR family transcriptional regulator compare
PS417_08825 +0.5 1.8 TetR family transcriptional regulator compare
PS417_19945 +0.5 2.0 MarR family transcriptional regulator compare
PS417_07455 +0.5 1.1 glutamine amidotransferase compare
PS417_10125 +0.5 1.3 hypothetical protein compare
PS417_24175 +0.5 3.8 hypothetical protein compare
PS417_15425 +0.5 2.0 acetyltransferase compare
PS417_18800 +0.5 1.6 hypothetical protein compare
PS417_17630 +0.5 1.4 RNA polymerase sigma factor compare
PS417_09235 +0.5 0.7 molecular chaperone compare
PS417_16395 +0.5 1.4 arsenate reductase compare
PS417_05400 +0.5 1.6 hypothetical protein compare
PS417_11375 +0.5 1.4 hypothetical protein compare
PS417_16065 +0.5 2.0 3-phytase compare
PS417_17855 +0.5 1.9 major facilitator transporter compare
PS417_08605 +0.5 2.3 response regulator compare
PS417_23775 +0.5 0.8 exodeoxyribonuclease V subunit beta compare
PS417_14165 +0.5 1.4 ArsR family transcriptional regulator compare
PS417_10330 +0.5 1.3 histidine kinase compare
PS417_26655 +0.5 1.7 chemotaxis protein compare
PS417_19275 +0.5 0.9 hypothetical protein compare
PS417_22005 +0.5 0.9 epimerase compare
PS417_12925 +0.5 2.0 serine dehydratase compare
PS417_11455 +0.5 1.1 hypothetical protein compare
PS417_02160 +0.5 0.8 hypothetical protein compare
PS417_03790 +0.5 1.3 pilus assembly protein PilW compare
PS417_17945 +0.5 0.5 hypothetical protein compare
PS417_13090 +0.5 1.3 dienelactone hydrolase compare
PS417_14915 +0.5 1.6 host specificity protein compare
PS417_18540 +0.5 1.0 colicin V production CvpA compare
PS417_14935 +0.5 1.6 transposase compare
PS417_22990 +0.5 0.9 iron dicitrate transport regulator FecR compare
PS417_05105 +0.5 1.7 membrane protein compare
PS417_11410 +0.5 1.1 phospholipase compare
PS417_18350 +0.5 1.8 hypothetical protein compare
PS417_24840 +0.5 0.9 hypothetical protein compare
PS417_26745 +0.5 2.0 methionine biosynthesis protein MetW compare
PS417_24615 +0.5 0.8 hypothetical protein compare
PS417_04530 +0.5 0.8 glycerate dehydrogenase compare
PS417_09655 +0.5 1.3 RNA polymerase sigma factor compare
PS417_08150 +0.5 1.3 hypothetical protein compare
PS417_12525 +0.5 1.9 hypothetical protein compare
PS417_13495 +0.5 1.8 nuclease compare
PS417_01465 +0.5 1.9 hypothetical protein compare
PS417_12315 +0.5 2.9 peptidylprolyl isomerase compare
PS417_03725 +0.5 1.2 acyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant control experiments

For supernatant control Vogels_fungal_media across organisms