Experiment set14IT054 for Pseudomonas simiae WCS417

Compare to:

Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_27795 -5.2 -1.6 orotate phosphoribosyltransferase compare
PS417_24745 -5.1 -5.9 gamma-glutamyl phosphate reductase compare
PS417_01605 -3.1 -2.4 phosphoglycerate mutase compare
PS417_20985 -3.0 -2.1 porin compare
PS417_26730 -3.0 -1.8 pyrroline-5-carboxylate reductase compare
PS417_23545 -2.6 -2.6 gamma-glutamyl kinase compare
PS417_16490 -2.6 -1.9 cell division protein FtsK compare
PS417_13455 -2.4 -4.2 alkaline proteinase inhibitor compare
PS417_22450 -2.3 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_04380 -2.1 -1.1 ABC transporter permease compare
PS417_07170 -2.1 -6.4 hypothetical protein compare
PS417_16555 -2.1 -2.1 cupin compare
PS417_22445 -2.1 -4.3 ATP-dependent DNA helicase RuvB compare
PS417_15885 -2.0 -2.1 GCN5 family acetyltransferase compare
PS417_23770 -1.8 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_06530 -1.8 -2.6 membrane protein compare
PS417_04275 -1.8 -11.9 hypothetical protein compare
PS417_08135 -1.8 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23950 -1.8 -2.5 polynucleotide phosphorylase/polyadenylase compare
PS417_21625 -1.8 -1.3 DNA-binding protein compare
PS417_17215 -1.8 -4.4 peptidylprolyl isomerase compare
PS417_08155 -1.8 -1.5 integration host factor subunit beta compare
PS417_01915 -1.8 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_17240 -1.7 -4.6 trigger factor compare
PS417_27870 -1.7 -3.3 ATP-dependent DNA helicase RecG compare
PS417_21125 -1.7 -5.7 phosphoadenosine phosphosulfate reductase compare
PS417_06375 -1.6 -1.1 deoxycytidine triphosphate deaminase compare
PS417_26900 -1.6 -2.1 L-cystine transporter tcyP compare
PS417_16720 -1.5 -1.3 membrane protein compare
PS417_27245 -1.5 -3.5 aminotransferase DegT compare
PS417_03815 -1.4 -2.9 DNA transporter compare
PS417_05475 -1.4 -2.4 arginase compare
PS417_08245 -1.4 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19065 -1.4 -1.1 monooxygenase compare
PS417_03260 -1.4 -1.1 5S ribosomal RNA compare
PS417_17035 -1.3 -1.3 Cro/Cl family transcriptional regulator compare
PS417_08335 -1.3 -2.1 hypothetical protein compare
PS417_27135 -1.3 -0.8 glutamine synthetase compare
PS417_03380 -1.3 -1.3 hypothetical protein compare
PS417_13075 -1.3 -1.4 hypothetical protein compare
PS417_02160 -1.3 -1.2 hypothetical protein compare
PS417_04305 -1.2 -1.3 aspartate ammonia-lyase compare
PS417_20160 -1.2 -4.7 cysteine synthase compare
PS417_23025 -1.2 -3.9 murein transglycosylase compare
PS417_06245 -1.2 -1.6 zinc metallopeptidase RseP compare
PS417_22050 -1.2 -3.5 ribonuclease BN compare
PS417_21655 -1.2 -1.2 aspartate kinase compare
PS417_02365 -1.2 -3.5 hypothetical protein compare
PS417_21480 -1.2 -0.9 23S rRNA pseudouridylate synthase compare
PS417_05985 -1.2 -1.9 chemotaxis protein CheY compare
PS417_27075 -1.2 -2.5 thiol-disulfide isomerase compare
PS417_05830 -1.2 -3.0 hypothetical protein compare
PS417_23810 -1.2 -6.8 acetolactate synthase 3 catalytic subunit compare
PS417_02415 -1.2 -4.0 phosphoserine phosphatase compare
PS417_07140 -1.1 -3.2 peptidase M48 compare
PS417_09615 -1.1 -3.2 glycosyl transferase family 1 compare
PS417_02770 -1.1 -1.9 membrane protein compare
PS417_26985 -1.1 -4.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_07560 -1.1 -1.4 universal stress protein UspA compare
PS417_08200 -1.1 -2.7 hypothetical protein compare
PS417_18055 -1.1 -1.1 general secretion pathway protein GspK compare
PS417_11705 -1.1 -5.1 cyclic peptide transporter compare
PS417_02270 -1.1 -2.6 carbamoyltransferase compare
PS417_27800 -1.1 -2.2 exodeoxyribonuclease III compare
PS417_15705 -1.1 -2.2 nitrate reductase compare
PS417_10740 -1.1 -2.5 hypothetical protein compare
PS417_08540 -1.1 -1.8 RNA helicase compare
PS417_08220 -1.0 -0.7 epimerase compare
PS417_17590 -1.0 -1.7 ABC transporter substrate-binding protein compare
PS417_22850 -1.0 -4.3 virulence factor family protein compare
PS417_22520 -1.0 -1.5 histidine kinase compare
PS417_16510 -1.0 -2.0 Clp protease ClpX compare
PS417_15215 -1.0 -1.7 protein activator of alkane oxidation PraA compare
PS417_25030 -1.0 -2.9 hypothetical protein compare
PS417_05165 -1.0 -2.3 cytosol aminopeptidase compare
PS417_05500 -1.0 -1.7 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_04410 -1.0 -1.7 hypothetical protein compare
PS417_27865 -1.0 -1.9 LysR family transcriptional regulator compare
PS417_27195 -1.0 -1.1 N-acetylglutamate synthase compare
PS417_23805 -1.0 -3.1 acetolactate synthase 3 regulatory subunit compare
PS417_18545 -1.0 -2.7 cell division protein compare
PS417_24705 -1.0 -2.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_05510 -0.9 -3.7 alpha/beta hydrolase compare
PS417_27595 -0.9 -2.1 recombinase XerC compare
PS417_14315 -0.9 -1.8 2,5-dioxovalerate dehydrogenase compare
PS417_05200 -0.9 -1.9 DNA recombination protein RecO compare
PS417_19955 -0.9 -1.6 hypothetical protein compare
PS417_20080 -0.9 -2.7 peptidase P60 compare
PS417_25155 -0.9 -1.3 hypothetical protein compare
PS417_08125 -0.9 -0.4 prephenate dehydratase compare
PS417_24935 -0.9 -1.1 hypothetical protein compare
PS417_10010 -0.9 -1.7 Replication protein P compare
PS417_20785 -0.9 -2.2 transcriptional regulator compare
PS417_18495 -0.9 -1.8 hypothetical protein compare
PS417_28350 -0.9 -3.4 fatty acid methyltransferase compare
PS417_09595 -0.9 -3.0 membrane protein compare
PS417_02575 -0.9 -1.7 membrane protein compare
PS417_04800 -0.9 -1.8 alginate O-acetyltransferase compare
PS417_22575 -0.9 -5.2 exonuclease I compare
PS417_00085 -0.9 -1.6 16S rRNA methyltransferase compare
PS417_07710 -0.9 -2.6 membrane protein compare
PS417_14760 -0.9 -2.4 membrane protein compare
PS417_18235 -0.9 -1.9 nitrile hydratase compare
PS417_18710 -0.8 -3.4 hypothetical protein compare
PS417_12375 -0.8 -1.5 serine/threonine protein phosphatase compare
PS417_26815 -0.8 -1.6 peptidase M16 compare
PS417_27140 -0.8 -2.9 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_12595 -0.8 -1.3 transcriptional regulator compare
PS417_04390 -0.8 -2.5 toluene tolerance protein compare
PS417_12160 -0.8 -2.4 Fis family transcriptional regulator compare
PS417_08195 -0.8 -4.2 hypothetical protein compare
PS417_18060 -0.8 -1.6 general secretion pathway protein GspJ compare
PS417_04375 -0.8 -0.9 ABC transporter ATP-binding protein compare
PS417_04935 -0.8 -2.3 hypothetical protein compare
PS417_24535 -0.8 -1.1 membrane protein compare
PS417_18730 -0.8 -1.5 ABC transporter permease compare
PS417_23380 -0.8 -1.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_08190 -0.8 -4.9 membrane protein compare
PS417_19675 -0.8 -2.8 chemotaxis protein CheY compare
PS417_18540 -0.8 -1.7 colicin V production CvpA compare
PS417_08205 -0.8 -1.6 acetyltransferase compare
PS417_26605 -0.8 -0.7 malonate decarboxylase subunit beta compare
PS417_13510 -0.8 -0.8 polyketide cyclase compare
PS417_27605 -0.8 -3.0 hypothetical protein compare
PS417_15465 -0.8 -1.9 carboxynorspermidine decarboxylase compare
PS417_23580 -0.7 -0.8 peptidylprolyl isomerase compare
PS417_02915 -0.7 -2.7 precorrin-3B C17-methyltransferase compare
PS417_19720 -0.7 -1.0 DNA-binding protein compare
PS417_15665 -0.7 -1.3 hypothetical protein compare
PS417_14985 -0.7 -1.8 Fe-S protein compare
PS417_15135 -0.7 -0.7 hypothetical protein compare
PS417_09160 -0.7 -1.8 GNAT family acetyltransferase compare
PS417_06200 -0.7 -3.8 protein-PII uridylyltransferase compare
PS417_22690 -0.7 -2.4 phosphogluconate dehydratase compare
PS417_19270 -0.7 -2.2 hypothetical protein compare
PS417_06100 -0.7 -1.2 SAM-dependent methyltransferase compare
PS417_09325 -0.7 -2.0 peptidase S41 compare
PS417_08185 -0.7 -2.1 glycosyl transferase compare
PS417_22580 -0.7 -1.7 membrane protein compare
PS417_20520 -0.7 -1.4 3-phosphoglycerate kinase compare
PS417_00590 -0.7 -1.3 5S ribosomal RNA compare
PS417_24500 -0.7 -2.2 DEAD/DEAH box helicase compare
PS417_15750 -0.7 -0.9 protease compare
PS417_17400 -0.7 -2.9 TetR family transcriptional regulator compare
PS417_00370 -0.7 -0.7 hypothetical protein compare
PS417_01380 -0.7 -3.0 nucleotide cyclase compare
PS417_22895 -0.7 -3.5 tyrosine recombinase XerD compare
PS417_21380 -0.7 -1.9 GntR family transcriptional regulator compare
PS417_14890 -0.7 -2.0 LysR family transcriptional regulator compare
PS417_26755 -0.7 -0.9 nucleoside-triphosphate diphosphatase compare
PS417_21325 -0.7 -1.7 arabinose ABC transporter permease compare
PS417_17160 -0.7 -0.8 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_05975 -0.7 -0.5 chemotaxis protein CheW compare
PS417_12245 -0.7 -1.4 GNAT family acetyltransferase compare
PS417_00455 -0.7 -1.0 hypothetical protein compare
PS417_21210 -0.7 -1.8 amidotransferase compare
PS417_01570 -0.7 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_28035 -0.7 -2.1 transcriptional regulator PhoB compare
PS417_02280 -0.7 -1.1 GlcNAc-PI de-N-acetylase compare
PS417_05695 -0.7 -2.0 transcriptional regulator compare
PS417_19605 -0.7 -0.9 hypothetical protein compare
PS417_09545 -0.7 -1.6 aldehyde-activating protein compare
PS417_24620 -0.7 -1.3 hypothetical protein compare
PS417_00345 -0.7 -1.0 copper-binding protein compare
PS417_05445 -0.7 -0.8 DNA mismatch repair protein MutT compare
PS417_09020 -0.7 -1.9 esterase compare
PS417_01270 -0.7 -1.2 iron ABC transporter substrate-binding protein compare
PS417_12745 -0.6 -3.2 multidrug transporter compare
PS417_13645 -0.6 -1.3 ABC transporter compare
PS417_22775 -0.6 -3.1 histidine kinase compare
PS417_09235 -0.6 -0.6 molecular chaperone compare
PS417_23160 -0.6 -2.0 50S rRNA methyltransferase compare
PS417_03920 -0.6 -1.7 dephospho-CoA kinase compare
PS417_16245 -0.6 -2.4 Fis family transcriptional regulator compare
PS417_15110 -0.6 -3.1 protein BatD compare
PS417_15875 -0.6 -1.0 LuxR family transcriptional regulator compare
PS417_23045 -0.6 -1.6 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_12280 -0.6 -0.7 MerR family transcriptional regulator compare
PS417_07615 -0.6 -2.6 TetR family transcriptional regulator compare
PS417_09590 -0.6 -1.8 membrane protein compare
PS417_23135 -0.6 -1.1 GTP-binding protein compare
PS417_07385 -0.6 -2.5 2-hydroxyacid dehydrogenase compare
PS417_20650 -0.6 -3.2 hypothetical protein compare
PS417_12660 -0.6 -1.0 hypothetical protein compare
PS417_04340 -0.6 -2.2 ribosome hibernation promoting factor HPF compare
PS417_08130 -0.6 -1.3 aspartate aminotransferase compare
PS417_11175 -0.6 -1.1 AraC family transcriptional regulator compare
PS417_20950 -0.6 -1.4 hypothetical protein compare
PS417_12840 -0.6 -1.9 TetR family transcriptional regulator compare
PS417_07305 -0.6 -0.9 3-beta hydroxysteroid dehydrogenase compare
PS417_27105 -0.6 -2.5 spermidine/putrescine ABC transporter permease compare
PS417_18395 -0.6 -1.3 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_22550 -0.6 -1.7 ATP-binding protein compare
PS417_21255 -0.6 -1.3 hypothetical protein compare
PS417_17680 -0.6 -1.7 ABC transporter compare
PS417_27115 -0.6 -3.1 putrescine ABC transporter, ATPase component (from data) compare
PS417_13990 -0.6 -1.1 LysR family transcriptional regulator compare
PS417_18425 -0.6 -1.0 sporulation protein compare
PS417_03915 -0.6 -1.4 tRNA-Thr compare
PS417_13055 -0.6 -0.7 aminotransferase compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant control Vogels_fungal_media in Pseudomonas simiae WCS417

For supernatant control Vogels_fungal_media across organisms