Experiment set14IT053 for Pseudomonas simiae WCS417

Compare to:

Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_27795 -5.1 -1.6 orotate phosphoribosyltransferase compare
PS417_24745 -4.9 -4.7 gamma-glutamyl phosphate reductase compare
PS417_07470 -4.3 -2.4 hypothetical protein compare
PS417_01605 -3.9 -2.5 phosphoglycerate mutase compare
PS417_23770 -3.6 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_18310 -3.6 -1.8 hypothetical protein compare
PS417_23545 -3.4 -5.2 gamma-glutamyl kinase compare
PS417_23950 -3.4 -3.8 polynucleotide phosphorylase/polyadenylase compare
PS417_02280 -3.2 -2.2 GlcNAc-PI de-N-acetylase compare
PS417_06245 -3.1 -2.4 zinc metallopeptidase RseP compare
PS417_17215 -3.1 -3.8 peptidylprolyl isomerase compare
PS417_21430 -2.9 -2.5 3-oxoacyl-ACP synthase compare
PS417_26730 -2.8 -1.6 pyrroline-5-carboxylate reductase compare
PS417_03560 -2.6 -1.9 GTP-binding protein compare
PS417_02805 -2.3 -2.1 urease subunit gamma compare
PS417_22450 -2.3 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_07170 -2.2 -5.5 hypothetical protein compare
PS417_06530 -2.2 -3.3 membrane protein compare
PS417_17240 -2.1 -3.9 trigger factor compare
PS417_04380 -2.1 -1.1 ABC transporter permease compare
PS417_00065 -2.0 -1.6 3-methyladenine DNA glycosylase compare
PS417_27800 -2.0 -2.7 exodeoxyribonuclease III compare
PS417_00085 -2.0 -2.7 16S rRNA methyltransferase compare
PS417_27870 -2.0 -4.3 ATP-dependent DNA helicase RecG compare
PS417_05140 -2.0 -2.2 dipicolinate synthase compare
PS417_20785 -1.9 -4.7 transcriptional regulator compare
PS417_04275 -1.9 -12.5 hypothetical protein compare
PS417_24525 -1.9 -3.0 nuclease compare
PS417_07305 -1.9 -2.0 3-beta hydroxysteroid dehydrogenase compare
PS417_23380 -1.8 -2.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_21125 -1.8 -6.9 phosphoadenosine phosphosulfate reductase compare
PS417_22990 -1.8 -1.6 iron dicitrate transport regulator FecR compare
PS417_13455 -1.7 -3.1 alkaline proteinase inhibitor compare
PS417_00180 -1.7 -2.9 tryptophan synthase subunit alpha compare
PS417_01915 -1.6 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_16195 -1.6 -1.1 AraC family transcriptional regulator compare
PS417_00370 -1.6 -1.2 hypothetical protein compare
PS417_04390 -1.6 -2.6 toluene tolerance protein compare
PS417_02225 -1.6 -2.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_26335 -1.6 -2.9 BetI family transcriptional regulator compare
PS417_20985 -1.5 -1.7 porin compare
PS417_27245 -1.5 -3.0 aminotransferase DegT compare
PS417_22445 -1.5 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_24370 -1.5 -0.8 (2Fe-2S)-binding protein compare
PS417_09245 -1.5 -1.5 recombinase RdgC compare
PS417_05975 -1.5 -0.9 chemotaxis protein CheW compare
PS417_20160 -1.4 -3.3 cysteine synthase compare
PS417_21480 -1.4 -1.7 23S rRNA pseudouridylate synthase compare
PS417_23375 -1.4 -1.4 cytochrome C oxidase compare
PS417_10245 -1.4 -1.4 hypothetical protein compare
PS417_01630 -1.4 -1.7 hypothetical protein compare
PS417_08205 -1.4 -3.4 acetyltransferase compare
PS417_01145 -1.4 -1.0 taurine transporter ATP-binding subunit compare
PS417_01560 -1.4 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_09420 -1.3 -1.1 LysR family transcriptional regulator compare
PS417_00175 -1.3 -1.1 CigR compare
PS417_16555 -1.3 -1.4 cupin compare
PS417_13205 -1.3 -1.5 isochorismate-pyruvate lyase compare
PS417_24935 -1.3 -1.3 hypothetical protein compare
PS417_00705 -1.3 -1.3 MarR family transcriptional regulator compare
PS417_15105 -1.3 -4.8 membrane protein compare
PS417_08245 -1.3 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08090 -1.3 -0.8 3-oxoacyl-ACP reductase compare
PS417_20340 -1.2 -2.0 hypothetical protein compare
PS417_02270 -1.2 -2.2 carbamoyltransferase compare
PS417_19955 -1.2 -1.4 hypothetical protein compare
PS417_11705 -1.2 -4.4 cyclic peptide transporter compare
PS417_18055 -1.2 -1.0 general secretion pathway protein GspK compare
PS417_23025 -1.2 -3.9 murein transglycosylase compare
PS417_08135 -1.2 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08130 -1.2 -2.0 aspartate aminotransferase compare
PS417_03815 -1.2 -1.9 DNA transporter compare
PS417_04305 -1.2 -1.2 aspartate ammonia-lyase compare
PS417_22575 -1.2 -5.5 exonuclease I compare
PS417_18425 -1.2 -1.6 sporulation protein compare
PS417_23135 -1.2 -1.7 GTP-binding protein compare
PS417_18040 -1.1 -1.3 general secretion pathway protein GspN compare
PS417_03260 -1.1 -1.4 5S ribosomal RNA compare
PS417_08200 -1.1 -2.7 hypothetical protein compare
PS417_00510 -1.1 -1.0 membrane protein compare
PS417_21630 -1.1 -1.5 magnesium transporter compare
PS417_21510 -1.1 -1.4 histidine kinase compare
PS417_09600 -1.1 -2.3 glycosyl transferase family 1 compare
PS417_27865 -1.1 -1.7 LysR family transcriptional regulator compare
PS417_27195 -1.1 -1.0 N-acetylglutamate synthase compare
PS417_22565 -1.1 -0.7 formyltetrahydrofolate deformylase compare
PS417_15535 -1.1 -2.5 oxidoreductase compare
PS417_22795 -1.1 -1.1 exclusion suppressor FxsA compare
PS417_00900 -1.1 -1.4 4-aminobutyrate aminotransferase compare
PS417_01645 -1.1 -2.7 cupin compare
PS417_17455 -1.1 -2.3 cytochrome C compare
PS417_16255 -1.1 -1.3 RNA polymerase sigma factor compare
PS417_08540 -1.1 -1.7 RNA helicase compare
PS417_26985 -1.0 -5.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_14580 -1.0 -1.9 saccharopine dehydrogenase compare
PS417_10390 -1.0 -1.5 RNA polymerase subunit sigma24 compare
PS417_02335 -1.0 -2.1 multidrug DMT transporter compare
PS417_08190 -1.0 -5.8 membrane protein compare
PS417_08410 -1.0 -1.8 hypothetical protein compare
PS417_22050 -1.0 -2.9 ribonuclease BN compare
PS417_18710 -1.0 -3.7 hypothetical protein compare
PS417_28350 -1.0 -3.2 fatty acid methyltransferase compare
PS417_15465 -1.0 -1.9 carboxynorspermidine decarboxylase compare
PS417_09575 -1.0 -1.2 glutathione S-transferase compare
PS417_12190 -1.0 -1.6 microcin ABC transporter ATP-binding protein compare
PS417_23810 -1.0 -5.2 acetolactate synthase 3 catalytic subunit compare
PS417_15110 -1.0 -4.2 protein BatD compare
PS417_13990 -1.0 -1.6 LysR family transcriptional regulator compare
PS417_13185 -1.0 -1.5 RND transporter compare
PS417_02950 -1.0 -1.3 tRNA-dihydrouridine synthase B compare
PS417_18545 -1.0 -2.6 cell division protein compare
PS417_22775 -0.9 -4.3 histidine kinase compare
PS417_01620 -0.9 -1.0 preprotein translocase subunit SecB compare
PS417_23580 -0.9 -0.9 peptidylprolyl isomerase compare
PS417_25765 -0.9 -1.3 transcriptional regulator compare
PS417_23805 -0.9 -2.8 acetolactate synthase 3 regulatory subunit compare
PS417_13445 -0.9 -1.4 D-aminopeptidase compare
PS417_13800 -0.9 -1.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_00590 -0.9 -1.4 5S ribosomal RNA compare
PS417_03970 -0.9 -1.2 1-phosphofructokinase compare
PS417_16850 -0.9 -1.8 cation:proton antiporter compare
PS417_13795 -0.9 -3.8 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_00190 -0.9 -2.5 LysR family transcriptional regulator compare
PS417_23330 -0.9 -1.4 hypothetical protein compare
PS417_19425 -0.9 -0.7 allantoicase compare
PS417_20055 -0.9 -2.0 cob(II)yrinic acid a,c-diamide reductase compare
PS417_06490 -0.9 -3.4 hypothetical protein compare
PS417_15650 -0.9 -1.1 glutamine amidotransferase compare
PS417_23210 -0.9 -1.5 serine acetyltransferase compare
PS417_19065 -0.9 -0.8 monooxygenase compare
PS417_23460 -0.9 -2.7 LysR family transcriptional regulator compare
PS417_08315 -0.9 -3.5 hypothetical protein compare
PS417_17125 -0.9 -2.4 transcriptional regulator compare
PS417_06745 -0.9 -1.6 polysaccharide deacetylase compare
PS417_08685 -0.8 -1.1 flagellar hook-length control protein FliK compare
PS417_07140 -0.8 -2.6 peptidase M48 compare
PS417_22495 -0.8 -2.3 histidine triad (HIT) protein compare
PS417_28225 -0.8 -0.9 hypothetical protein compare
PS417_00925 -0.8 -0.9 hypothetical protein compare
PS417_16510 -0.8 -2.9 Clp protease ClpX compare
PS417_14045 -0.8 -1.7 alkyl hydroperoxide reductase compare
PS417_01405 -0.8 -1.6 sugar transporter compare
PS417_18930 -0.8 -1.1 restriction endonuclease subunit S compare
PS417_20080 -0.8 -2.6 peptidase P60 compare
PS417_26805 -0.8 -0.7 cell division protein FtsE compare
PS417_15035 -0.8 -1.0 alkylhydroperoxidase compare
PS417_08045 -0.8 -1.4 uracil permease compare
PS417_07945 -0.8 -1.9 hypothetical protein compare
PS417_05830 -0.8 -2.3 hypothetical protein compare
PS417_08230 -0.8 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_27605 -0.8 -3.1 hypothetical protein compare
PS417_07710 -0.8 -2.6 membrane protein compare
PS417_19835 -0.8 -1.1 flagellar biosynthesis protein FliS compare
PS417_06945 -0.8 -0.9 membrane protein compare
PS417_20720 -0.8 -2.0 cbb3-type cytochrome c oxidase subunit I compare
PS417_15160 -0.8 -1.3 hypothetical protein compare
PS417_12755 -0.8 -1.8 RND transporter compare
PS417_17840 -0.8 -1.1 betaine-aldehyde dehydrogenase compare
PS417_12380 -0.8 -1.8 peptidase S54 compare
PS417_01920 -0.8 -0.7 ATP-dependent protease subunit HslV compare
PS417_01950 -0.8 -3.0 malate dehydrogenase compare
PS417_14835 -0.8 -3.1 amidase compare
PS417_17685 -0.8 -2.0 allantoate amidohydrolase compare
PS417_08335 -0.8 -0.9 hypothetical protein compare
PS417_02045 -0.8 -1.2 3-oxoacyl-ACP synthase compare
PS417_06025 -0.8 -1.5 alpha/beta hydrolase compare
PS417_19285 -0.8 -0.9 ankyrin compare
PS417_18600 -0.7 -1.6 isopropylmalate isomerase compare
PS417_16665 -0.7 -1.1 hypothetical protein compare
PS417_06375 -0.7 -0.6 deoxycytidine triphosphate deaminase compare
PS417_10335 -0.7 -1.6 peroxiredoxin compare
PS417_06125 -0.7 -1.7 hypothetical protein compare
PS417_12355 -0.7 -1.2 magnesium chelatase compare
PS417_27275 -0.7 -2.6 hypothetical protein compare
PS417_05300 -0.7 -4.2 glucose dehydrogenase compare
PS417_04595 -0.7 -1.3 cell division protein MraZ compare
PS417_11425 -0.7 -2.1 transcriptional regulator compare
PS417_02475 -0.7 -1.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_00355 -0.7 -1.5 metal ABC transporter permease compare
PS417_02255 -0.7 -1.6 lipopolysaccharide kinase compare
PS417_17680 -0.7 -1.4 ABC transporter compare
PS417_16160 -0.7 -1.6 ABC transporter substrate-binding protein compare
PS417_07385 -0.7 -2.6 2-hydroxyacid dehydrogenase compare
PS417_07560 -0.7 -1.0 universal stress protein UspA compare
PS417_11930 -0.7 -2.9 hypothetical protein compare
PS417_27380 -0.7 -1.0 GntR family transcriptional regulator compare
PS417_17610 -0.7 -0.8 AsnC family transcriptional regulator compare
PS417_17160 -0.7 -0.8 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_21250 -0.7 -2.2 hypothetical protein compare
PS417_00490 -0.7 -2.0 iron ABC transporter ATP-binding protein compare
PS417_25825 -0.7 -1.9 sulfurtransferase compare
PS417_01080 -0.7 -1.7 acyl-CoA dehydrogenase compare
PS417_02560 -0.7 -1.0 23S rRNA methyltransferase compare
PS417_24710 -0.7 -2.9 lipoprotein compare
PS417_22725 -0.7 -2.7 chemotaxis protein compare
PS417_20825 -0.7 -1.2 drug:proton antiporter compare
PS417_20980 -0.7 -4.1 uroporphyrin-III methyltransferase compare
PS417_04800 -0.7 -0.9 alginate O-acetyltransferase compare
PS417_15285 -0.7 -0.7 type VI secretion protein compare
PS417_21625 -0.7 -0.7 DNA-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant control experiments

For supernatant control Vogels_fungal_media across organisms