Experiment set14IT051 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_24745 -4.4 -7.8 gamma-glutamyl phosphate reductase compare
PS417_23545 -4.1 -5.0 gamma-glutamyl kinase compare
PS417_26730 -4.0 -1.9 pyrroline-5-carboxylate reductase compare
PS417_03260 -3.3 -1.3 5S ribosomal RNA compare
PS417_06375 -3.3 -1.5 deoxycytidine triphosphate deaminase compare
PS417_20985 -3.1 -2.1 porin compare
PS417_01605 -3.0 -2.5 phosphoglycerate mutase compare
PS417_17215 -2.7 -3.1 peptidylprolyl isomerase compare
PS417_04650 -2.6 -1.2 D-alanine--D-alanine ligase compare
PS417_17795 -2.5 -2.2 ABC transporter permease compare
PS417_04375 -2.4 -2.8 ABC transporter ATP-binding protein compare
PS417_13455 -2.3 -4.2 alkaline proteinase inhibitor compare
PS417_08130 -2.3 -4.0 aspartate aminotransferase compare
PS417_08155 -2.1 -2.2 integration host factor subunit beta compare
PS417_27870 -2.0 -4.0 ATP-dependent DNA helicase RecG compare
PS417_22450 -2.0 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_08135 -1.8 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_11440 -1.8 -1.7 hypothetical protein compare
PS417_17240 -1.8 -5.5 trigger factor compare
PS417_27040 -1.8 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_08245 -1.7 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01915 -1.7 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27315 -1.7 -1.5 hypothetical protein compare
PS417_04275 -1.7 -11.7 hypothetical protein compare
PS417_15285 -1.6 -1.4 type VI secretion protein compare
PS417_22445 -1.6 -2.9 ATP-dependent DNA helicase RuvB compare
PS417_07170 -1.6 -3.5 hypothetical protein compare
PS417_00510 -1.6 -1.5 membrane protein compare
PS417_27795 -1.6 -1.3 orotate phosphoribosyltransferase compare
PS417_24935 -1.6 -1.6 hypothetical protein compare
PS417_09590 -1.5 -4.1 membrane protein compare
PS417_22050 -1.5 -5.1 ribonuclease BN compare
PS417_01920 -1.5 -1.1 ATP-dependent protease subunit HslV compare
PS417_20785 -1.4 -4.9 transcriptional regulator compare
PS417_04365 -1.4 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_17610 -1.4 -1.6 AsnC family transcriptional regulator compare
PS417_15540 -1.4 -1.7 NUDIX hydrolase compare
PS417_24525 -1.4 -2.2 nuclease compare
PS417_17680 -1.4 -1.8 ABC transporter compare
PS417_08205 -1.4 -3.3 acetyltransferase compare
PS417_08410 -1.3 -2.3 hypothetical protein compare
PS417_02950 -1.3 -3.0 tRNA-dihydrouridine synthase B compare
PS417_27135 -1.3 -0.8 glutamine synthetase compare
PS417_27800 -1.3 -2.2 exodeoxyribonuclease III compare
PS417_06530 -1.3 -2.8 membrane protein compare
PS417_27595 -1.3 -1.9 recombinase XerC compare
PS417_03935 -1.2 -3.4 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_23855 -1.2 -1.7 ABC transporter substrate-binding protein compare
PS417_04380 -1.2 -0.9 ABC transporter permease compare
PS417_18105 -1.2 -1.5 iron-dicitrate transporter substrate-binding subunit compare
PS417_16490 -1.2 -1.1 cell division protein FtsK compare
PS417_18425 -1.2 -1.8 sporulation protein compare
PS417_22210 -1.2 -2.1 AraC family transcriptional regulator compare
PS417_06730 -1.2 -1.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_10995 -1.1 -1.6 GntR family transcriptional regulator compare
PS417_11705 -1.1 -6.0 cyclic peptide transporter compare
PS417_00195 -1.1 -1.7 hypothetical protein compare
PS417_03455 -1.1 -1.8 type III secretion protein compare
PS417_17070 -1.1 -2.0 RNA polymerase subunit sigma-24 compare
PS417_18055 -1.1 -1.2 general secretion pathway protein GspK compare
PS417_18545 -1.1 -2.2 cell division protein compare
PS417_08195 -1.1 -5.7 hypothetical protein compare
PS417_08190 -1.1 -7.4 membrane protein compare
PS417_23770 -1.1 -1.5 exodeoxyribonuclease V subunit alpha compare
PS417_15885 -1.1 -1.6 GCN5 family acetyltransferase compare
PS417_00065 -1.1 -1.4 3-methyladenine DNA glycosylase compare
PS417_23160 -1.1 -2.1 50S rRNA methyltransferase compare
PS417_15105 -1.1 -3.4 membrane protein compare
PS417_08125 -1.1 -0.5 prephenate dehydratase compare
PS417_15095 -1.0 -2.1 hypothetical protein compare
PS417_13205 -1.0 -2.0 isochorismate-pyruvate lyase compare
PS417_27245 -1.0 -1.4 aminotransferase DegT compare
PS417_20160 -1.0 -2.8 cysteine synthase compare
PS417_28020 -1.0 -1.8 chorismate--pyruvate lyase compare
PS417_13185 -1.0 -1.7 RND transporter compare
PS417_10305 -1.0 -1.8 hypothetical protein compare
PS417_06150 -1.0 -1.6 SAM-dependent methlyltransferase compare
PS417_03815 -1.0 -1.6 DNA transporter compare
PS417_15085 -1.0 -2.4 ATPase AAA compare
PS417_09325 -0.9 -3.2 peptidase S41 compare
PS417_26985 -0.9 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_17350 -0.9 -3.1 copper resistance protein CopD compare
PS417_05510 -0.9 -3.6 alpha/beta hydrolase compare
PS417_20650 -0.9 -4.5 hypothetical protein compare
PS417_08335 -0.9 -1.2 hypothetical protein compare
PS417_03705 -0.9 -4.1 2-alkenal reductase compare
PS417_06245 -0.9 -1.2 zinc metallopeptidase RseP compare
PS417_04390 -0.9 -2.3 toluene tolerance protein compare
PS417_05160 -0.9 -0.9 DNA polymerase III subunit chi compare
PS417_27715 -0.9 -1.2 Fe-S oxidoreductase compare
PS417_08185 -0.9 -3.2 glycosyl transferase compare
PS417_03300 -0.9 -2.0 alanine acetyltransferase compare
PS417_15035 -0.9 -1.2 alkylhydroperoxidase compare
PS417_06620 -0.9 -2.1 hypothetical protein compare
PS417_19630 -0.9 -1.8 LuxR family transcriptional regulator compare
PS417_22575 -0.8 -4.3 exonuclease I compare
PS417_07565 -0.8 -1.8 hypothetical protein compare
PS417_08200 -0.8 -1.7 hypothetical protein compare
PS417_11810 -0.8 -1.0 oxidoreductase compare
PS417_23135 -0.8 -1.5 GTP-binding protein compare
PS417_21655 -0.8 -1.0 aspartate kinase compare
PS417_22270 -0.8 -1.7 hypothetical protein compare
PS417_27300 -0.8 -0.6 cell division protein ZapA compare
PS417_17645 -0.8 -1.2 RND transporter compare
PS417_07950 -0.8 -1.8 MFS transporter compare
PS417_13140 -0.8 -1.1 oxidoreductase compare
PS417_22775 -0.8 -4.4 histidine kinase compare
PS417_22850 -0.8 -3.0 virulence factor family protein compare
PS417_16510 -0.8 -3.4 Clp protease ClpX compare
PS417_07710 -0.8 -2.6 membrane protein compare
PS417_07140 -0.8 -2.1 peptidase M48 compare
PS417_28350 -0.8 -3.6 fatty acid methyltransferase compare
PS417_10005 -0.8 -2.2 Pyocin large subunit-like protein compare
PS417_27865 -0.8 -2.1 LysR family transcriptional regulator compare
PS417_16855 -0.8 -1.3 cation:proton antiporter compare
PS417_07010 -0.8 -1.9 pseudouridine synthase compare
PS417_01965 -0.8 -1.4 fimbriae biosynthesis protein compare
PS417_23535 -0.8 -2.7 glutathione peroxidase compare
PS417_05505 -0.8 -4.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_02560 -0.8 -1.1 23S rRNA methyltransferase compare
PS417_02270 -0.8 -2.4 carbamoyltransferase compare
PS417_21430 -0.8 -0.8 3-oxoacyl-ACP synthase compare
PS417_23810 -0.8 -4.5 acetolactate synthase 3 catalytic subunit compare
PS417_00650 -0.7 -0.6 LysR family transcriptional regulator compare
PS417_10455 -0.7 -1.6 membrane protein compare
PS417_07655 -0.7 -1.2 glycerophosphodiester phosphodiesterase compare
PS417_14565 -0.7 -2.4 chemotaxis protein compare
PS417_25270 -0.7 -1.2 NrdR family transcriptional regulator compare
PS417_25905 -0.7 -1.9 AsnC family transcriptional regulator compare
PS417_12325 -0.7 -1.9 precorrin-4 C11-methyltransferase compare
PS417_10715 -0.7 -1.2 Cro/Cl family transcriptional regulator compare
PS417_00475 -0.7 -3.1 membrane protein compare
PS417_21125 -0.7 -2.8 phosphoadenosine phosphosulfate reductase compare
PS417_14760 -0.7 -2.0 membrane protein compare
PS417_19955 -0.7 -0.8 hypothetical protein compare
PS417_20855 -0.7 -1.0 hypothetical protein compare
PS417_22875 -0.7 -1.2 hypothetical protein compare
PS417_15465 -0.7 -1.7 carboxynorspermidine decarboxylase compare
PS417_14940 -0.7 -1.1 LysR family transcriptional regulator compare
PS417_05500 -0.7 -1.9 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_02885 -0.7 -1.5 hypothetical protein compare
PS417_22565 -0.7 -0.5 formyltetrahydrofolate deformylase compare
PS417_12795 -0.7 -3.8 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_02975 -0.7 -2.2 3-dehydroquinate dehydratase compare
PS417_23820 -0.7 -2.8 hypothetical protein compare
PS417_21425 -0.7 -1.1 4-amino-4-deoxychorismate lyase compare
PS417_17505 -0.7 -1.4 LuxR family transcriptional regulator compare
PS417_01620 -0.7 -1.9 preprotein translocase subunit SecB compare
PS417_02575 -0.7 -1.3 membrane protein compare
PS417_23015 -0.7 -2.1 NGG1p interacting factor 3 protein, NIF3 compare
PS417_15110 -0.7 -1.5 protein BatD compare
PS417_28035 -0.7 -2.8 transcriptional regulator PhoB compare
PS417_10680 -0.7 -1.3 enoyl-CoA hydratase compare
PS417_08685 -0.7 -1.1 flagellar hook-length control protein FliK compare
PS417_22660 -0.7 -1.4 hypothetical protein compare
PS417_27075 -0.7 -1.9 thiol-disulfide isomerase compare
PS417_02800 -0.7 -1.2 acetyltransferase compare
PS417_03385 -0.7 -0.8 flavin reductase compare
PS417_11725 -0.7 -1.3 peptidase M19 compare
PS417_12855 -0.7 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_05830 -0.7 -2.0 hypothetical protein compare
PS417_20930 -0.7 -3.1 50S rRNA methyltransferase compare
PS417_22845 -0.7 -5.1 membrane protein compare
PS417_21995 -0.7 -2.6 hypothetical protein compare
PS417_10810 -0.7 -1.3 hypothetical protein compare
PS417_15875 -0.7 -1.3 LuxR family transcriptional regulator compare
PS417_22935 -0.6 -1.9 hypothetical protein compare
PS417_12505 -0.6 -2.4 peptidase compare
PS417_01280 -0.6 -1.5 peptidoglycan-binding protein LysM compare
PS417_00455 -0.6 -1.3 hypothetical protein compare
PS417_27320 -0.6 -2.7 hemolysin secretion protein D compare
PS417_18710 -0.6 -2.8 hypothetical protein compare
PS417_10425 -0.6 -0.9 hypothetical protein compare
PS417_15100 -0.6 -1.2 BatB protein compare
PS417_06030 -0.6 -2.3 hypothetical protein compare
PS417_23170 -0.6 -1.1 FeS assembly protein IscX compare
PS417_10600 -0.6 -1.2 hypothetical protein compare
PS417_27810 -0.6 -3.0 ribonuclease PH compare
PS417_12870 -0.6 -1.0 enoyl-CoA hydratase compare
PS417_04305 -0.6 -0.9 aspartate ammonia-lyase compare
PS417_22620 -0.6 -2.2 pyruvate kinase compare
PS417_05985 -0.6 -1.7 chemotaxis protein CheY compare
PS417_24560 -0.6 -1.3 ferrous iron transporter compare
PS417_08540 -0.6 -1.3 RNA helicase compare
PS417_14235 -0.6 -2.7 hypothetical protein compare
PS417_21375 -0.6 -3.2 ADP-ribosylglycohydrolase compare
PS417_09600 -0.6 -1.7 glycosyl transferase family 1 compare
PS417_08510 -0.6 -1.4 LysR family transcriptional regulator compare
PS417_11360 -0.6 -1.7 energy transducer TonB compare
PS417_13525 -0.6 -1.7 membrane protein compare
PS417_17190 -0.6 -2.0 MarR family transcriptional regulator compare
PS417_19350 -0.6 -2.0 GTP cyclohydrolase compare
PS417_10275 -0.6 -1.1 histidine kinase compare
PS417_16400 -0.6 -1.2 NAD(P)H-quinone oxidoreductase compare
PS417_23215 -0.6 -1.8 RNA methyltransferase compare
PS417_08945 -0.6 -2.9 heat shock protein 90 compare
PS417_11945 -0.6 -1.1 hypothetical protein compare
PS417_14875 -0.6 -1.9 polyisoprenoid-binding protein compare
PS417_19065 -0.6 -0.6 monooxygenase compare
PS417_28250 -0.6 -3.5 cell wall assembly protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms