Experiment set14IT050 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_24745 -5.0 -7.2 gamma-glutamyl phosphate reductase compare
PS417_22570 -4.6 -1.4 H-NS histone compare
PS417_01605 -4.0 -2.4 phosphoglycerate mutase compare
PS417_26730 -3.9 -1.7 pyrroline-5-carboxylate reductase compare
PS417_27795 -2.7 -1.4 orotate phosphoribosyltransferase compare
PS417_07170 -2.6 -5.7 hypothetical protein compare
PS417_08125 -2.6 -0.7 prephenate dehydratase compare
PS417_26605 -2.5 -1.4 malonate decarboxylase subunit beta compare
PS417_13140 -2.5 -2.3 oxidoreductase compare
PS417_27245 -2.4 -4.0 aminotransferase DegT compare
PS417_27800 -2.4 -2.3 exodeoxyribonuclease III compare
PS417_08230 -2.2 -2.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23375 -2.2 -1.9 cytochrome C oxidase compare
PS417_23545 -2.2 -1.6 gamma-glutamyl kinase compare
PS417_04375 -2.1 -2.6 ABC transporter ATP-binding protein compare
PS417_21625 -2.1 -1.4 DNA-binding protein compare
PS417_20985 -2.0 -1.9 porin compare
PS417_19285 -2.0 -1.9 ankyrin compare
PS417_15665 -1.9 -1.8 hypothetical protein compare
PS417_22990 -1.9 -1.5 iron dicitrate transport regulator FecR compare
PS417_02475 -1.8 -2.3 N-acetylmuramoyl-L-alanine amidase compare
PS417_20160 -1.8 -4.2 cysteine synthase compare
PS417_21630 -1.8 -2.4 magnesium transporter compare
PS417_21655 -1.8 -1.5 aspartate kinase compare
PS417_06530 -1.8 -2.6 membrane protein compare
PS417_22565 -1.7 -0.9 formyltetrahydrofolate deformylase compare
PS417_15915 -1.7 -1.6 hypothetical protein compare
PS417_00370 -1.7 -1.2 hypothetical protein compare
PS417_01915 -1.7 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27300 -1.6 -0.8 cell division protein ZapA compare
PS417_18310 -1.6 -1.5 hypothetical protein compare
PS417_16555 -1.6 -1.7 cupin compare
PS417_04275 -1.6 -9.6 hypothetical protein compare
PS417_24370 -1.6 -0.8 (2Fe-2S)-binding protein compare
PS417_08135 -1.5 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_05905 -1.5 -2.3 hypothetical protein compare
PS417_17215 -1.5 -2.4 peptidylprolyl isomerase compare
PS417_27870 -1.5 -3.0 ATP-dependent DNA helicase RecG compare
PS417_22450 -1.4 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_16510 -1.4 -4.4 Clp protease ClpX compare
PS417_20785 -1.4 -3.5 transcriptional regulator compare
PS417_16195 -1.4 -1.0 AraC family transcriptional regulator compare
PS417_07140 -1.3 -3.7 peptidase M48 compare
PS417_07710 -1.3 -4.1 membrane protein compare
PS417_08090 -1.3 -0.8 3-oxoacyl-ACP reductase compare
PS417_04390 -1.3 -2.2 toluene tolerance protein compare
PS417_03385 -1.3 -1.2 flavin reductase compare
PS417_05830 -1.3 -3.7 hypothetical protein compare
PS417_03080 -1.3 -2.1 hypothetical protein compare
PS417_21125 -1.2 -4.7 phosphoadenosine phosphosulfate reductase compare
PS417_09600 -1.2 -2.9 glycosyl transferase family 1 compare
PS417_07620 -1.2 -2.0 beta-hexosaminidase compare
PS417_08155 -1.2 -0.8 integration host factor subunit beta compare
PS417_22690 -1.2 -2.4 phosphogluconate dehydratase compare
PS417_22345 -1.2 -3.5 acetyl-CoA carboxylase compare
PS417_22445 -1.2 -3.3 ATP-dependent DNA helicase RuvB compare
PS417_08245 -1.2 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_10910 -1.2 -1.8 FAD-dependent oxidoreductase compare
PS417_24935 -1.2 -1.2 hypothetical protein compare
PS417_00660 -1.2 -2.6 DSBA oxidoreductase compare
PS417_15085 -1.2 -2.6 ATPase AAA compare
PS417_26985 -1.2 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23380 -1.2 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_21425 -1.2 -1.6 4-amino-4-deoxychorismate lyase compare
PS417_05065 -1.2 -1.7 hypothetical protein compare
PS417_11950 -1.2 -1.3 hypothetical protein compare
PS417_13455 -1.1 -2.0 alkaline proteinase inhibitor compare
PS417_17305 -1.1 -1.2 hypothetical protein compare
PS417_18425 -1.1 -1.5 sporulation protein compare
PS417_22575 -1.1 -5.4 exonuclease I compare
PS417_08685 -1.1 -1.2 flagellar hook-length control protein FliK compare
PS417_03550 -1.1 -1.9 hypothetical protein compare
PS417_23770 -1.1 -1.3 exodeoxyribonuclease V subunit alpha compare
PS417_25390 -1.1 -1.7 MFS transporter compare
PS417_24500 -1.1 -2.4 DEAD/DEAH box helicase compare
PS417_13445 -1.1 -1.3 D-aminopeptidase compare
PS417_08185 -1.1 -2.2 glycosyl transferase compare
PS417_23810 -1.1 -5.8 acetolactate synthase 3 catalytic subunit compare
PS417_11885 -1.1 -2.9 Inositol transport system sugar-binding protein (from data) compare
PS417_05100 -1.1 -1.7 RNA polymerase sigma factor compare
PS417_13050 -1.1 -1.2 N-acetylglucosamine-6-sulfatase compare
PS417_23915 -1.1 -1.9 pantoate--beta-alanine ligase compare
PS417_12565 -1.1 -1.9 2-dehydro-3-deoxygluconokinase compare
PS417_13510 -1.0 -0.9 polyketide cyclase compare
PS417_27340 -1.0 -2.9 NADPH:quinone oxidoreductase compare
PS417_26770 -1.0 -1.5 tRNA (guanine-N7)-methyltransferase compare
PS417_18545 -1.0 -2.3 cell division protein compare
PS417_06375 -1.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_17240 -1.0 -2.0 trigger factor compare
PS417_18020 -1.0 -1.3 hypothetical protein compare
PS417_17830 -1.0 -1.8 4-hydroxyphenylacetate isomerase compare
PS417_14315 -1.0 -1.8 2,5-dioxovalerate dehydrogenase compare
PS417_10710 -1.0 -1.3 GNAT family acetyltransferase compare
PS417_15285 -1.0 -0.9 type VI secretion protein compare
PS417_08205 -1.0 -2.7 acetyltransferase compare
PS417_04225 -1.0 -1.0 conjugal transfer protein TraR compare
PS417_08195 -0.9 -5.4 hypothetical protein compare
PS417_06675 -0.9 -2.1 ATP-dependent helicase compare
PS417_20025 -0.9 -1.1 alpha-ribazole phosphatase compare
PS417_23995 -0.9 -0.7 preprotein translocase subunit SecG compare
PS417_23370 -0.9 -2.2 protoheme IX farnesyltransferase compare
PS417_17440 -0.9 -1.3 beta-lactamase compare
PS417_15030 -0.9 -0.9 short-chain dehydrogenase compare
PS417_00705 -0.9 -1.0 MarR family transcriptional regulator compare
PS417_00045 -0.9 -1.1 glycerol acyltransferase compare
PS417_10935 -0.9 -4.0 xylose transporter compare
PS417_16680 -0.9 -1.8 MFS transporter compare
PS417_22050 -0.9 -3.2 ribonuclease BN compare
PS417_21210 -0.9 -1.8 amidotransferase compare
PS417_06030 -0.9 -2.4 hypothetical protein compare
PS417_00195 -0.9 -1.4 hypothetical protein compare
PS417_06045 -0.9 -1.5 membrane protein compare
PS417_21270 -0.9 -1.1 translation initiation factor 2 compare
PS417_27770 -0.9 -2.6 hypothetical protein compare
PS417_02980 -0.8 -0.8 chemotaxis protein compare
PS417_26155 -0.8 -1.5 hypothetical protein compare
PS417_02365 -0.8 -2.0 hypothetical protein compare
PS417_23205 -0.8 -1.1 transcriptional regulator compare
PS417_03045 -0.8 -1.0 hypothetical protein compare
PS417_15535 -0.8 -2.3 oxidoreductase compare
PS417_03260 -0.8 -1.1 5S ribosomal RNA compare
PS417_27000 -0.8 -1.9 membrane protein compare
PS417_01920 -0.8 -0.7 ATP-dependent protease subunit HslV compare
PS417_21380 -0.8 -1.5 GntR family transcriptional regulator compare
PS417_11880 -0.8 -1.4 oxidoreductase compare
PS417_08190 -0.8 -5.1 membrane protein compare
PS417_15110 -0.8 -2.5 protein BatD compare
PS417_05445 -0.8 -0.9 DNA mismatch repair protein MutT compare
PS417_15875 -0.8 -0.9 LuxR family transcriptional regulator compare
PS417_13195 -0.8 -1.0 RND transporter MFP subunit compare
PS417_03865 -0.8 -1.7 hypothetical protein compare
PS417_19955 -0.8 -1.1 hypothetical protein compare
PS417_04590 -0.8 -2.2 methyltransferase compare
PS417_23710 -0.8 -2.1 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
PS417_10125 -0.8 -1.0 hypothetical protein compare
PS417_20125 -0.8 -2.0 phosphoribosylglycinamide formyltransferase compare
PS417_24115 -0.8 -1.2 hypothetical protein compare
PS417_19305 -0.8 -2.8 acireductone dioxygenase compare
PS417_15335 -0.8 -2.1 hypothetical protein compare
PS417_15470 -0.8 -2.2 saccharopine dehydrogenase compare
PS417_16665 -0.8 -1.1 hypothetical protein compare
PS417_23855 -0.8 -1.2 ABC transporter substrate-binding protein compare
PS417_16850 -0.8 -2.0 cation:proton antiporter compare
PS417_07950 -0.8 -1.4 MFS transporter compare
PS417_06730 -0.8 -1.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_22350 -0.8 -1.4 Fis family transcriptional regulator compare
PS417_20310 -0.8 -1.5 hypothetical protein compare
PS417_07615 -0.8 -2.2 TetR family transcriptional regulator compare
PS417_27865 -0.8 -1.4 LysR family transcriptional regulator compare
PS417_18530 -0.8 -2.7 O-succinylhomoserine sulfhydrylase compare
PS417_28325 -0.8 -0.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_15095 -0.8 -2.1 hypothetical protein compare
PS417_23160 -0.8 -1.7 50S rRNA methyltransferase compare
PS417_15370 -0.8 -1.6 kinase compare
PS417_17190 -0.7 -1.9 MarR family transcriptional regulator compare
PS417_17795 -0.7 -1.1 ABC transporter permease compare
PS417_11705 -0.7 -3.3 cyclic peptide transporter compare
PS417_15585 -0.7 -1.0 DNA repair nucleotidyltransferase compare
PS417_12035 -0.7 -1.0 dihydroxyacetone kinase compare
PS417_28145 -0.7 -1.6 AraC family transcriptional regulator compare
PS417_18460 -0.7 -1.6 transcriptional regulator compare
PS417_18040 -0.7 -0.9 general secretion pathway protein GspN compare
PS417_08225 -0.7 -2.1 acetolactate synthase compare
PS417_11320 -0.7 -1.1 hypothetical protein compare
PS417_28140 -0.7 -1.9 asparaginase compare
PS417_11810 -0.7 -1.1 oxidoreductase compare
PS417_17405 -0.7 -0.8 AraC family transcriptional regulator compare
PS417_12595 -0.7 -0.8 transcriptional regulator compare
PS417_19190 -0.7 -1.5 BolA family transcriptional regulator compare
PS417_11400 -0.7 -0.7 phosphoglycerate mutase compare
PS417_14140 -0.7 -1.3 membrane protein compare
PS417_18080 -0.7 -2.4 general secretion pathway protein GspF compare
PS417_21480 -0.7 -0.7 23S rRNA pseudouridylate synthase compare
PS417_25780 -0.7 -1.5 molecular chaperone DnaJ compare
PS417_10145 -0.7 -1.5 hypothetical protein compare
PS417_19630 -0.7 -1.9 LuxR family transcriptional regulator compare
PS417_16950 -0.7 -1.5 fimbrial protein compare
PS417_21980 -0.7 -2.1 permease DsdX compare
PS417_18435 -0.7 -1.5 hypothetical protein compare
PS417_09575 -0.7 -1.6 glutathione S-transferase compare
PS417_02845 -0.7 -1.5 ABC transporter permease compare
PS417_00490 -0.7 -2.1 iron ABC transporter ATP-binding protein compare
PS417_03225 -0.7 -2.0 thymidylate synthase compare
PS417_28070 -0.7 -3.5 phosphate ABC transporter ATP-binding protein compare
PS417_26990 -0.7 -0.4 RNA pyrophosphohydrolase compare
PS417_11015 -0.7 -1.5 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_09335 -0.7 -1.1 HAD family hydrolase compare
PS417_04305 -0.7 -0.7 aspartate ammonia-lyase compare
PS417_11075 -0.7 -1.4 hydroxypyruvate isomerase compare
PS417_06205 -0.7 -3.0 methionine aminopeptidase compare
PS417_05505 -0.7 -2.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_26220 -0.7 -1.0 Rieske (2Fe-2S) protein compare
PS417_05810 -0.7 -1.9 damage-inducible protein CinA compare
PS417_15770 -0.7 -0.7 pyridoxine 5'-phosphate oxidase compare
PS417_20650 -0.7 -3.1 hypothetical protein compare
PS417_13800 -0.7 -1.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_21315 -0.7 -2.4 hydroxyacid dehydrogenase compare
PS417_28030 -0.7 -1.8 hypothetical protein compare
PS417_13730 -0.7 -1.3 hypothetical protein compare
PS417_09325 -0.6 -1.9 peptidase S41 compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms