Experiment set14IT049 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_24745 -4.7 -7.0 gamma-glutamyl phosphate reductase compare
PS417_23545 -4.6 -4.5 gamma-glutamyl kinase compare
PS417_23950 -3.4 -4.7 polynucleotide phosphorylase/polyadenylase compare
PS417_23770 -3.2 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_27800 -2.7 -1.9 exodeoxyribonuclease III compare
PS417_08125 -2.7 -0.9 prephenate dehydratase compare
PS417_01605 -2.6 -2.1 phosphoglycerate mutase compare
PS417_20985 -2.6 -2.5 porin compare
PS417_03260 -2.4 -1.8 5S ribosomal RNA compare
PS417_26730 -2.4 -2.0 pyrroline-5-carboxylate reductase compare
PS417_27795 -2.3 -1.6 orotate phosphoribosyltransferase compare
PS417_18310 -2.3 -2.3 hypothetical protein compare
PS417_08155 -2.3 -1.8 integration host factor subunit beta compare
PS417_27870 -2.2 -4.8 ATP-dependent DNA helicase RecG compare
PS417_17215 -2.2 -5.2 peptidylprolyl isomerase compare
PS417_27595 -2.0 -2.5 recombinase XerC compare
PS417_22445 -1.9 -6.7 ATP-dependent DNA helicase RuvB compare
PS417_27245 -1.9 -5.6 aminotransferase DegT compare
PS417_21480 -1.9 -1.9 23S rRNA pseudouridylate synthase compare
PS417_20160 -1.9 -4.2 cysteine synthase compare
PS417_08135 -1.7 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08245 -1.7 -1.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_07170 -1.7 -4.1 hypothetical protein compare
PS417_13455 -1.7 -4.2 alkaline proteinase inhibitor compare
PS417_06245 -1.6 -2.7 zinc metallopeptidase RseP compare
PS417_04275 -1.6 -10.5 hypothetical protein compare
PS417_17240 -1.6 -3.7 trigger factor compare
PS417_24895 -1.6 -1.9 hypothetical protein compare
PS417_04365 -1.5 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02280 -1.4 -2.1 GlcNAc-PI de-N-acetylase compare
PS417_07140 -1.4 -4.4 peptidase M48 compare
PS417_20785 -1.4 -4.2 transcriptional regulator compare
PS417_23615 -1.4 -3.4 sulfate transporter compare
PS417_22565 -1.4 -0.9 formyltetrahydrofolate deformylase compare
PS417_02070 -1.3 -1.2 membrane protein compare
PS417_08685 -1.3 -2.1 flagellar hook-length control protein FliK compare
PS417_21125 -1.3 -3.9 phosphoadenosine phosphosulfate reductase compare
PS417_04380 -1.3 -0.9 ABC transporter permease compare
PS417_28350 -1.3 -5.4 fatty acid methyltransferase compare
PS417_26985 -1.3 -5.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_07710 -1.2 -4.5 membrane protein compare
PS417_06375 -1.2 -1.1 deoxycytidine triphosphate deaminase compare
PS417_27640 -1.2 -1.5 TetR family transcriptional regulator compare
PS417_17125 -1.2 -2.8 transcriptional regulator compare
PS417_21630 -1.2 -2.2 magnesium transporter compare
PS417_24705 -1.2 -2.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_06530 -1.1 -3.6 membrane protein compare
PS417_20610 -1.1 -1.3 hypothetical protein compare
PS417_08410 -1.1 -1.9 hypothetical protein compare
PS417_15875 -1.1 -1.8 LuxR family transcriptional regulator compare
PS417_24935 -1.1 -1.4 hypothetical protein compare
PS417_03300 -1.1 -3.3 alanine acetyltransferase compare
PS417_04650 -1.1 -0.8 D-alanine--D-alanine ligase compare
PS417_23915 -1.1 -3.5 pantoate--beta-alanine ligase compare
PS417_26815 -1.1 -1.9 peptidase M16 compare
PS417_12565 -1.1 -2.4 2-dehydro-3-deoxygluconokinase compare
PS417_01915 -1.1 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22575 -1.1 -5.6 exonuclease I compare
PS417_08185 -1.1 -3.7 glycosyl transferase compare
PS417_15915 -1.0 -0.9 hypothetical protein compare
PS417_05830 -1.0 -2.2 hypothetical protein compare
PS417_02950 -1.0 -1.9 tRNA-dihydrouridine synthase B compare
PS417_08130 -1.0 -1.5 aspartate aminotransferase compare
PS417_18545 -1.0 -3.2 cell division protein compare
PS417_09590 -1.0 -3.3 membrane protein compare
PS417_11705 -1.0 -6.0 cyclic peptide transporter compare
PS417_01920 -1.0 -1.0 ATP-dependent protease subunit HslV compare
PS417_08090 -1.0 -0.8 3-oxoacyl-ACP reductase compare
PS417_10275 -1.0 -1.0 histidine kinase compare
PS417_23715 -1.0 -2.6 cupin compare
PS417_20125 -0.9 -2.9 phosphoribosylglycinamide formyltransferase compare
PS417_14890 -0.9 -3.1 LysR family transcriptional regulator compare
PS417_05510 -0.9 -2.5 alpha/beta hydrolase compare
PS417_15705 -0.9 -1.6 nitrate reductase compare
PS417_12520 -0.9 -1.5 hypothetical protein compare
PS417_18125 -0.9 -2.5 polar amino acid ABC transporter permease compare
PS417_02475 -0.9 -2.2 N-acetylmuramoyl-L-alanine amidase compare
PS417_08190 -0.9 -6.0 membrane protein compare
PS417_07565 -0.9 -1.5 hypothetical protein compare
PS417_04595 -0.9 -1.8 cell division protein MraZ compare
PS417_16490 -0.9 -1.4 cell division protein FtsK compare
PS417_01620 -0.9 -2.2 preprotein translocase subunit SecB compare
PS417_22690 -0.9 -2.6 phosphogluconate dehydratase compare
PS417_16475 -0.9 -1.7 camphor resistance protein CrcB compare
PS417_22570 -0.9 -0.8 H-NS histone compare
PS417_16720 -0.9 -1.1 membrane protein compare
PS417_08230 -0.9 -1.8 lipopolysaccharide biosynthesis protein RfbH compare
PS417_15090 -0.9 -1.3 hypothetical protein compare
PS417_24500 -0.9 -1.6 DEAD/DEAH box helicase compare
PS417_07620 -0.9 -1.8 beta-hexosaminidase compare
PS417_10145 -0.9 -1.9 hypothetical protein compare
PS417_11945 -0.9 -1.3 hypothetical protein compare
PS417_00900 -0.9 -2.1 4-aminobutyrate aminotransferase compare
PS417_00755 -0.9 -0.5 biofilm PGA synthesis protein PgaD compare
PS417_24235 -0.8 -2.6 hypothetical protein compare
PS417_13140 -0.8 -1.3 oxidoreductase compare
PS417_18710 -0.8 -3.0 hypothetical protein compare
PS417_21360 -0.8 -0.9 termination factor Rho compare
PS417_09325 -0.8 -3.5 peptidase S41 compare
PS417_08195 -0.8 -4.6 hypothetical protein compare
PS417_02365 -0.8 -1.8 hypothetical protein compare
PS417_00085 -0.8 -1.9 16S rRNA methyltransferase compare
PS417_16245 -0.8 -3.2 Fis family transcriptional regulator compare
PS417_03515 -0.8 -1.5 type III secretion protein compare
PS417_16510 -0.8 -2.3 Clp protease ClpX compare
PS417_13710 -0.8 -1.8 hypothetical protein compare
PS417_06845 -0.8 -1.1 lipoprotein compare
PS417_22775 -0.8 -3.9 histidine kinase compare
PS417_27040 -0.8 -2.4 3-phosphoglycerate dehydrogenase compare
PS417_18205 -0.8 -1.5 aldehyde dehydrogenase compare
PS417_15100 -0.8 -1.5 BatB protein compare
PS417_15105 -0.8 -3.4 membrane protein compare
PS417_02255 -0.8 -1.8 lipopolysaccharide kinase compare
PS417_25390 -0.8 -2.3 MFS transporter compare
PS417_09475 -0.8 -3.2 class V aminotransferase compare
PS417_08205 -0.8 -3.1 acetyltransferase compare
PS417_04875 -0.8 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_24225 -0.8 -1.8 hypothetical protein compare
PS417_26605 -0.7 -0.9 malonate decarboxylase subunit beta compare
PS417_00975 -0.7 -1.0 hypothetical protein compare
PS417_08545 -0.7 -1.6 aromatic ring-opening dioxygenase LigB compare
PS417_04300 -0.7 -2.7 FagA protein compare
PS417_09045 -0.7 -2.8 histidine kinase compare
PS417_10910 -0.7 -2.4 FAD-dependent oxidoreductase compare
PS417_15285 -0.7 -0.9 type VI secretion protein compare
PS417_27585 -0.7 -1.6 diaminopimelate epimerase compare
PS417_19955 -0.7 -1.6 hypothetical protein compare
PS417_04385 -0.7 -1.8 organic solvent ABC transporter substrate-binding protein compare
PS417_02270 -0.7 -2.2 carbamoyltransferase compare
PS417_13790 -0.7 -2.1 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_22520 -0.7 -0.9 histidine kinase compare
PS417_07950 -0.7 -1.5 MFS transporter compare
PS417_12660 -0.7 -1.3 hypothetical protein compare
PS417_08335 -0.7 -1.0 hypothetical protein compare
PS417_23810 -0.7 -4.6 acetolactate synthase 3 catalytic subunit compare
PS417_22050 -0.7 -2.5 ribonuclease BN compare
PS417_09585 -0.7 -2.7 acetyltransferase compare
PS417_02975 -0.7 -2.1 3-dehydroquinate dehydratase compare
PS417_04390 -0.7 -2.2 toluene tolerance protein compare
PS417_26280 -0.7 -2.5 NADPH:quinone reductase compare
PS417_13990 -0.7 -1.4 LysR family transcriptional regulator compare
PS417_23160 -0.7 -2.3 50S rRNA methyltransferase compare
PS417_12840 -0.7 -1.9 TetR family transcriptional regulator compare
PS417_28525 -0.7 -2.4 RNA polymerase sigma factor compare
PS417_20500 -0.7 -2.7 hypothetical protein compare
PS417_02895 -0.7 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_10425 -0.7 -1.2 hypothetical protein compare
PS417_04475 -0.7 -1.9 hypothetical protein compare
PS417_00355 -0.7 -1.2 metal ABC transporter permease compare
PS417_25030 -0.7 -1.9 hypothetical protein compare
PS417_27605 -0.7 -2.3 hypothetical protein compare
PS417_17350 -0.7 -1.9 copper resistance protein CopD compare
PS417_16785 -0.7 -2.2 ABC transporter permease compare
PS417_17805 -0.6 -0.7 microcin B17 processing protein McbC compare
PS417_15540 -0.6 -0.8 NUDIX hydrolase compare
PS417_04865 -0.6 -2.3 molybdenum cofactor biosynthesis protein MoaC compare
PS417_15665 -0.6 -0.6 hypothetical protein compare
PS417_17645 -0.6 -1.1 RND transporter compare
PS417_21855 -0.6 -2.4 hypothetical protein compare
PS417_07635 -0.6 -4.4 transcription-repair coupling factor compare
PS417_16465 -0.6 -3.5 sirohydrochlorin ferrochelatase compare
PS417_23755 -0.6 -1.6 membrane protein compare
PS417_18105 -0.6 -0.8 iron-dicitrate transporter substrate-binding subunit compare
PS417_19155 -0.6 -1.8 DSBA oxidoreductase compare
PS417_02690 -0.6 -3.0 N-acylglucosamine 2-epimerase compare
PS417_03560 -0.6 -0.9 GTP-binding protein compare
PS417_15085 -0.6 -1.9 ATPase AAA compare
PS417_24085 -0.6 -2.0 protein RnfH compare
PS417_20650 -0.6 -3.3 hypothetical protein compare
PS417_01590 -0.6 -1.2 polysaccharide deacetylase compare
PS417_27110 -0.6 -2.0 spermidine/putrescine ABC transporter permease compare
PS417_18165 -0.6 -1.5 membrane protein compare
PS417_19240 -0.6 -2.1 peptidase M42 compare
PS417_02485 -0.6 -2.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_05810 -0.6 -2.8 damage-inducible protein CinA compare
PS417_14810 -0.6 -2.0 Fosmidomycin resistance protein compare
PS417_00190 -0.6 -1.1 LysR family transcriptional regulator compare
PS417_03100 -0.6 -0.7 pilus assembly protein compare
PS417_28190 -0.6 -2.3 amino acid ABC transporter substrate-binding protein compare
PS417_11390 -0.6 -1.0 LysR family transcriptional regulator compare
PS417_03655 -0.6 -1.7 short-chain dehydrogenase compare
PS417_08945 -0.6 -3.3 heat shock protein 90 compare
PS417_16020 -0.6 -2.0 LysR family transcriptional regulator compare
PS417_15505 -0.6 -1.3 glutaminase compare
PS417_00445 -0.6 -3.3 histidine kinase compare
PS417_08650 -0.6 -1.4 transcriptional regulator compare
PS417_12795 -0.6 -3.2 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_07945 -0.6 -1.6 hypothetical protein compare
PS417_19675 -0.6 -1.4 chemotaxis protein CheY compare
PS417_23135 -0.6 -1.2 GTP-binding protein compare
PS417_20025 -0.6 -1.1 alpha-ribazole phosphatase compare
PS417_01550 -0.6 -2.2 cell envelope biogenesis protein AsmA compare
PS417_26220 -0.6 -1.6 Rieske (2Fe-2S) protein compare
PS417_23805 -0.6 -1.2 acetolactate synthase 3 regulatory subunit compare
PS417_13055 -0.6 -0.7 aminotransferase compare
PS417_02210 -0.6 -2.2 diguanylate cyclase compare
PS417_18425 -0.6 -1.1 sporulation protein compare
PS417_17285 -0.6 -3.3 hypothetical protein compare
PS417_00185 -0.6 -1.6 tryptophan synthase subunit beta compare
PS417_21680 -0.6 -2.5 succinylglutamate desuccinylase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms