Experiment set14IT049 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

200 most detrimental genes:

  gene name fitness t score description  
PS417_19825 +2.6 17.5 ATPase AAA compare
PS417_21565 +1.8 8.7 flagellar basal body rod protein FlgC compare
PS417_21585 +1.8 13.0 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19695 +1.7 9.4 flagellar biosynthesis sigma factor compare
PS417_27875 +1.7 8.6 histidine kinase compare
PS417_19740 +1.6 8.4 flagellar biosynthesis protein flip compare
PS417_19765 +1.6 12.3 flagellar hook-length control protein compare
PS417_11825 +1.5 6.5 transcriptional regulator compare
PS417_21555 +1.5 12.3 flagellar hook protein FlgE compare
PS417_17855 +1.5 2.5 major facilitator transporter compare
PS417_21570 +1.5 9.8 flagellar basal body rod protein FlgB compare
PS417_19795 +1.5 12.6 flagellar assembly protein FliH compare
PS417_19730 +1.5 7.0 flagellar biosynthesis protein FliR compare
PS417_19880 +1.5 7.5 flagellar basal body L-ring protein compare
PS417_19735 +1.4 8.5 flagellar biosynthesis protein FliQ compare
PS417_19865 +1.4 10.3 flagellar hook protein FlgK compare
PS417_19725 +1.4 5.7 flagellar biosynthesis protein FlhB compare
PS417_19860 +1.3 10.1 flagellar hook protein FlgL compare
PS417_19870 +1.3 6.6 flagellar rod assembly protein FlgJ compare
PS417_19710 +1.2 8.3 flagellar biosynthesis protein FlhA compare
PS417_19885 +1.2 5.9 flagellar basal body rod protein FlgG compare
PS417_11820 +1.2 4.9 histidine kinase compare
PS417_19745 +1.2 9.9 flagellar assembly protein FliO compare
PS417_07875 +1.2 1.6 hypothetical protein compare
PS417_19785 +1.2 2.5 flagellar biogenesis protein compare
PS417_03465 +1.1 2.7 type III secretion protein compare
PS417_00845 +1.0 2.2 transcriptional regulator compare
PS417_17295 +1.0 5.1 RND transporter MFP subunit compare
PS417_06370 +1.0 2.0 cold-shock protein compare
PS417_12870 +1.0 2.0 enoyl-CoA hydratase compare
PS417_21595 +1.0 5.2 flagellar biosynthesis protein FlgN compare
PS417_06395 +1.0 3.0 amino acid transporter compare
PS417_19790 +0.9 3.4 ATP synthase compare
PS417_12110 +0.9 1.0 ATP-binding protein compare
PS417_07890 +0.9 3.0 hypothetical protein compare
PS417_21560 +0.9 2.8 flagellar basal body rod modification protein FlgD compare
PS417_17290 +0.9 7.0 RND transporter compare
PS417_19840 +0.9 6.3 flagellar cap protein FliD compare
PS417_22810 +0.9 3.0 DNA base-flipping protein YbaZ compare
PS417_13090 +0.9 3.0 dienelactone hydrolase compare
PS417_16560 +0.9 1.9 GNAT family acetyltransferase compare
PS417_19830 +0.8 1.9 flagellar assembly protein FliT compare
PS417_01195 +0.8 3.2 RNA-binding protein S4 compare
PS417_10665 +0.8 0.9 hypothetical protein compare
PS417_11925 +0.8 2.5 hypothetical protein compare
PS417_19850 +0.8 4.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_08320 +0.8 1.6 metal-chelation protein CHAD compare
PS417_17300 +0.8 5.6 RND transporter compare
PS417_02035 +0.8 3.0 3-ketoacyl-ACP reductase compare
PS417_22705 +0.8 1.9 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_12400 +0.8 2.8 oxidoreductase compare
PS417_16815 +0.8 1.4 acyl-CoA dehydrogenase compare
PS417_27380 +0.8 1.7 GntR family transcriptional regulator compare
PS417_13965 +0.7 1.6 acetoin utilization protein compare
PS417_06480 +0.7 3.1 hypothetical protein compare
PS417_01855 +0.7 2.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_16535 +0.7 2.6 NUDIX hydrolase compare
PS417_27990 +0.7 1.7 hypothetical protein compare
PS417_01955 +0.7 4.1 peptidase compare
PS417_24840 +0.7 1.4 hypothetical protein compare
PS417_05975 +0.7 0.9 chemotaxis protein CheW compare
PS417_02385 +0.7 1.6 esterase compare
PS417_13495 +0.7 2.9 nuclease compare
PS417_19800 +0.7 2.4 flagellar motor switch protein FliG compare
PS417_02510 +0.7 1.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19690 +0.7 2.9 histidine kinase compare
PS417_13010 +0.7 1.8 alpha/beta hydrolase compare
PS417_04690 +0.7 2.9 transcriptional regulator compare
PS417_23170 +0.7 1.7 FeS assembly protein IscX compare
PS417_12945 +0.7 3.4 sulfonate ABC transporter ATP-binding protein compare
PS417_09010 +0.7 1.4 phosphohistidine phosphatase compare
PS417_00510 +0.7 0.7 membrane protein compare
PS417_03380 +0.7 0.9 hypothetical protein compare
PS417_27005 +0.7 1.1 membrane protein compare
PS417_21915 +0.7 2.3 LysR family transcriptional regulator compare
PS417_17070 +0.7 1.5 RNA polymerase subunit sigma-24 compare
PS417_21990 +0.7 1.1 LacI family transcriptional regulator compare
PS417_02440 +0.7 2.4 flagellar motor protein MotB compare
PS417_27715 +0.7 1.3 Fe-S oxidoreductase compare
PS417_18025 +0.7 1.7 cytochrome C compare
PS417_01440 +0.7 2.7 hypothetical protein compare
PS417_00195 +0.7 1.3 hypothetical protein compare
PS417_22375 +0.7 0.7 cold-shock protein compare
PS417_15380 +0.7 3.2 hypothetical protein compare
PS417_07840 +0.7 2.2 hypothetical protein compare
PS417_15215 +0.6 1.7 protein activator of alkane oxidation PraA compare
PS417_10040 +0.6 0.9 MFS transporter compare
PS417_04180 +0.6 2.1 GntR family transcriptional regulator compare
PS417_07985 +0.6 1.5 AbrB family transcriptional regulator compare
PS417_15400 +0.6 0.8 hypothetical protein compare
PS417_15520 +0.6 2.6 hypothetical protein compare
PS417_01410 +0.6 4.3 transporter compare
PS417_19805 +0.6 2.9 flagellar M-ring protein FliF compare
PS417_23150 +0.6 1.8 Cro/Cl family transcriptional regulator compare
PS417_16520 +0.6 1.3 cold-shock protein compare
PS417_02340 +0.6 1.7 LysR family transcriptional regulator compare
PS417_21270 +0.6 1.7 translation initiation factor 2 compare
PS417_15820 +0.6 1.1 universal stress protein UspA compare
PS417_11615 +0.6 1.2 urea ABC transporter ATP-binding protein compare
PS417_27520 +0.6 2.3 uroporphyrin-III methyltransferase compare
PS417_07865 +0.6 1.4 hypothetical protein compare
PS417_00045 +0.6 1.3 glycerol acyltransferase compare
PS417_25275 +0.6 1.9 hypothetical protein compare
PS417_27555 +0.6 2.1 DNA-binding protein compare
PS417_24030 +0.6 1.5 MFS transporter compare
PS417_10810 +0.6 1.6 hypothetical protein compare
PS417_00535 +0.6 1.1 Holliday junction resolvase compare
PS417_24615 +0.6 0.9 hypothetical protein compare
PS417_20685 +0.6 1.9 CAAX protease compare
PS417_17305 +0.6 1.2 hypothetical protein compare
PS417_00830 +0.6 2.6 hypothetical protein compare
PS417_07870 +0.6 1.2 hypothetical protein compare
PS417_21695 +0.6 1.5 succinylglutamate-semialdehyde dehydrogenase compare
PS417_27300 +0.6 0.6 cell division protein ZapA compare
PS417_14280 +0.6 1.3 hypothetical protein compare
PS417_15495 +0.6 0.9 FAD-dependent oxidoreductase compare
PS417_02990 +0.6 2.1 hypothetical protein compare
PS417_00810 +0.6 1.7 RNA polymerase sigma factor compare
PS417_10060 +0.6 0.7 hypothetical protein compare
PS417_27335 +0.6 3.0 flagellar basal body protein FliL compare
PS417_05635 +0.6 2.5 membrane protein compare
PS417_01390 +0.6 3.9 PbsX family transcriptional regulator compare
PS417_06700 +0.6 1.6 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) compare
PS417_16275 +0.6 1.6 hypothetical protein compare
PS417_03940 +0.6 1.3 membrane protein compare
PS417_16360 +0.6 1.9 histidine kinase compare
PS417_07845 +0.5 1.7 transcriptional regulator compare
PS417_11485 +0.5 0.9 AraC family transcriptional regulator compare
PS417_10880 +0.5 2.8 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_00455 +0.5 1.4 hypothetical protein compare
PS417_15895 +0.5 2.5 iron dicitrate transport regulator FecR compare
PS417_24170 +0.5 5.0 cell division protein FtsK compare
PS417_08620 +0.5 0.7 hypothetical protein compare
PS417_02865 +0.5 1.5 peptidase compare
PS417_02435 +0.5 3.2 flagellar motor protein MotA compare
PS417_13785 +0.5 1.6 hypothetical protein compare
PS417_24180 +0.5 4.4 hypothetical protein compare
PS417_04220 +0.5 1.0 4-carboxymuconolactone decarboxylase compare
PS417_14070 +0.5 1.4 hypothetical protein compare
PS417_07940 +0.5 1.1 hypothetical protein compare
PS417_21845 +0.5 1.4 membrane protein compare
PS417_00350 +0.5 2.8 methionine ABC transporter substrate-binding protein compare
PS417_06350 +0.5 3.3 stationary phase survival protein SurE compare
PS417_02225 +0.5 1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_01415 +0.5 4.1 glycosyl transferase family 1 compare
PS417_08165 +0.5 3.4 UDP-glucose 4-epimerase compare
PS417_10045 +0.5 2.4 hypothetical protein compare
PS417_07860 +0.5 2.6 hypothetical protein compare
PS417_10025 +0.5 1.0 bacteriophage lambda NinG family protein compare
PS417_00835 +0.5 1.7 hypothetical protein compare
PS417_08565 +0.5 1.6 peptide methionine sulfoxide reductase compare
PS417_27535 +0.5 3.2 chemotaxis protein CheY compare
PS417_06355 +0.5 2.2 protein-L-isoaspartate O-methyltransferase compare
PS417_01420 +0.5 3.6 histidine kinase compare
PS417_11280 +0.5 1.5 HxcX atypical pseudopilin compare
PS417_24175 +0.5 3.9 hypothetical protein compare
PS417_10345 +0.5 2.2 MFS transporter compare
PS417_05400 +0.5 2.1 hypothetical protein compare
PS417_04835 +0.5 1.6 hemolysin D compare
PS417_14900 +0.5 2.5 C4-dicarboxylate ABC transporter permease compare
PS417_18000 +0.5 1.5 hypothetical protein compare
PS417_16395 +0.5 1.5 arsenate reductase compare
PS417_15440 +0.5 1.4 iron ABC transporter substrate-binding protein compare
PS417_11415 +0.5 1.3 hypothetical protein compare
PS417_14755 +0.5 1.1 UV damage repair endonuclease UvdE compare
PS417_24620 +0.5 1.0 hypothetical protein compare
PS417_11455 +0.5 1.3 hypothetical protein compare
PS417_08585 +0.5 1.8 ATPase AAA compare
PS417_01290 +0.5 1.0 ADP-ribose diphosphatase compare
PS417_14935 +0.5 1.8 transposase compare
PS417_05970 +0.5 2.3 chemotaxis protein CheR compare
PS417_19215 +0.5 1.7 polyphosphate kinase compare
PS417_10860 +0.5 1.2 flagellar basal body rod protein FlgG compare
PS417_04965 +0.5 1.3 hypothetical protein compare
PS417_19500 +0.5 1.7 antibiotic synthesis protein MbtH compare
PS417_17800 +0.5 3.0 microcin B17-processing protein McbD compare
PS417_19705 +0.5 1.2 flagellar biosynthesis regulator FlhF compare
PS417_19760 +0.5 1.9 flagellar basal body protein FliL compare
PS417_13730 +0.5 1.5 hypothetical protein compare
PS417_13175 +0.5 1.2 iron transporter compare
PS417_26160 +0.5 1.5 hypothetical protein compare
PS417_11860 +0.5 2.1 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
PS417_17675 +0.5 0.9 ABC transporter compare
PS417_04800 +0.5 1.6 alginate O-acetyltransferase compare
PS417_26305 +0.5 1.5 AraC family transcriptional regulator compare
PS417_11760 +0.5 1.4 Fis family transcriptional regulator compare
PS417_09570 +0.5 2.9 GCN5 family acetyltransferase compare
PS417_21345 +0.5 2.8 GNAT family acetyltransferase compare
PS417_18060 +0.5 1.3 general secretion pathway protein GspJ compare
PS417_07895 +0.5 1.5 hypothetical protein compare
PS417_27710 +0.5 2.4 AsnC family transcriptional regulator compare
PS417_05920 +0.5 2.0 gamma-aminobutyraldehyde dehydrogenase compare
PS417_17780 +0.5 0.7 Ais protein compare
PS417_24135 +0.5 0.7 hypothetical protein compare
PS417_05105 +0.5 2.2 membrane protein compare
PS417_14065 +0.5 2.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_26445 +0.5 1.4 ArsR family transcriptional regulator compare
PS417_03785 +0.5 1.3 pilus assembly protein PilV compare
PS417_15305 +0.5 1.9 type VI secretion protein compare
PS417_14260 +0.5 1.7 phosphate ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms