Experiment set14IT048 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_24745 -6.1 -6.0 gamma-glutamyl phosphate reductase compare
PS417_26730 -3.9 -2.0 pyrroline-5-carboxylate reductase compare
PS417_01915 -3.3 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22450 -3.1 -2.6 ATP-dependent DNA helicase RuvA compare
PS417_23545 -3.0 -2.7 gamma-glutamyl kinase compare
PS417_01605 -2.8 -2.5 phosphoglycerate mutase compare
PS417_05975 -2.6 -1.3 chemotaxis protein CheW compare
PS417_20855 -2.5 -1.4 hypothetical protein compare
PS417_04650 -2.5 -1.2 D-alanine--D-alanine ligase compare
PS417_26605 -2.4 -1.6 malonate decarboxylase subunit beta compare
PS417_20785 -2.3 -4.2 transcriptional regulator compare
PS417_13455 -2.3 -4.5 alkaline proteinase inhibitor compare
PS417_08410 -2.2 -3.0 hypothetical protein compare
PS417_04375 -2.1 -2.5 ABC transporter ATP-binding protein compare
PS417_07170 -2.0 -5.1 hypothetical protein compare
PS417_27795 -2.0 -1.4 orotate phosphoribosyltransferase compare
PS417_17240 -2.0 -4.9 trigger factor compare
PS417_08155 -1.9 -1.9 integration host factor subunit beta compare
PS417_05830 -1.8 -4.8 hypothetical protein compare
PS417_06375 -1.8 -1.3 deoxycytidine triphosphate deaminase compare
PS417_06945 -1.8 -1.7 membrane protein compare
PS417_21430 -1.7 -1.5 3-oxoacyl-ACP synthase compare
PS417_04275 -1.6 -10.1 hypothetical protein compare
PS417_08135 -1.6 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23375 -1.6 -1.7 cytochrome C oxidase compare
PS417_27800 -1.6 -2.1 exodeoxyribonuclease III compare
PS417_26695 -1.6 -1.5 uracil phosphoribosyltransferase compare
PS417_20985 -1.5 -1.8 porin compare
PS417_07470 -1.5 -1.2 hypothetical protein compare
PS417_07120 -1.5 -5.5 RNA polymerase sigma-H factor compare
PS417_21360 -1.5 -1.3 termination factor Rho compare
PS417_23770 -1.5 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_04385 -1.5 -2.8 organic solvent ABC transporter substrate-binding protein compare
PS417_23950 -1.4 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_22445 -1.4 -2.5 ATP-dependent DNA helicase RuvB compare
PS417_26985 -1.4 -6.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_00705 -1.4 -1.1 MarR family transcriptional regulator compare
PS417_20160 -1.4 -4.0 cysteine synthase compare
PS417_17215 -1.4 -2.6 peptidylprolyl isomerase compare
PS417_02365 -1.3 -2.5 hypothetical protein compare
PS417_21655 -1.3 -1.3 aspartate kinase compare
PS417_01145 -1.3 -1.1 taurine transporter ATP-binding subunit compare
PS417_13510 -1.3 -1.2 polyketide cyclase compare
PS417_08435 -1.2 -1.6 pilus assembly protein PilZ compare
PS417_21480 -1.2 -1.3 23S rRNA pseudouridylate synthase compare
PS417_15770 -1.2 -1.3 pyridoxine 5'-phosphate oxidase compare
PS417_27245 -1.2 -2.7 aminotransferase DegT compare
PS417_27870 -1.2 -2.8 ATP-dependent DNA helicase RecG compare
PS417_09470 -1.2 -1.0 hypothetical protein compare
PS417_01580 -1.2 -1.6 imidazole glycerol phosphate synthase compare
PS417_03260 -1.1 -1.0 5S ribosomal RNA compare
PS417_02975 -1.1 -2.3 3-dehydroquinate dehydratase compare
PS417_17035 -1.1 -1.2 Cro/Cl family transcriptional regulator compare
PS417_06530 -1.1 -3.2 membrane protein compare
PS417_25700 -1.1 -1.5 cyclic AMP receptor protein compare
PS417_22795 -1.1 -1.8 exclusion suppressor FxsA compare
PS417_02280 -1.1 -2.0 GlcNAc-PI de-N-acetylase compare
PS417_07140 -1.0 -3.5 peptidase M48 compare
PS417_19675 -1.0 -3.8 chemotaxis protein CheY compare
PS417_02270 -1.0 -2.8 carbamoyltransferase compare
PS417_08200 -1.0 -3.2 hypothetical protein compare
PS417_19955 -1.0 -1.8 hypothetical protein compare
PS417_02485 -1.0 -3.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08225 -1.0 -3.1 acetolactate synthase compare
PS417_10480 -1.0 -1.4 glutathione S-transferase compare
PS417_12595 -1.0 -1.6 transcriptional regulator compare
PS417_22050 -1.0 -2.6 ribonuclease BN compare
PS417_16510 -1.0 -3.4 Clp protease ClpX compare
PS417_04800 -0.9 -1.8 alginate O-acetyltransferase compare
PS417_28350 -0.9 -4.1 fatty acid methyltransferase compare
PS417_08190 -0.9 -6.5 membrane protein compare
PS417_14530 -0.9 -2.9 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_11705 -0.9 -4.5 cyclic peptide transporter compare
PS417_27865 -0.9 -2.6 LysR family transcriptional regulator compare
PS417_08730 -0.9 -1.2 cytochrome C compare
PS417_04595 -0.9 -1.6 cell division protein MraZ compare
PS417_05865 -0.9 -1.8 hypothetical protein compare
PS417_15030 -0.9 -1.0 short-chain dehydrogenase compare
PS417_19505 -0.9 -1.8 2,4-diaminobutyrate 4-aminotransferase compare
PS417_08945 -0.9 -3.8 heat shock protein 90 compare
PS417_27180 -0.9 -2.0 peroxidase compare
PS417_22575 -0.9 -4.2 exonuclease I compare
PS417_01380 -0.9 -2.9 nucleotide cyclase compare
PS417_01620 -0.9 -1.4 preprotein translocase subunit SecB compare
PS417_18710 -0.9 -3.1 hypothetical protein compare
PS417_25315 -0.9 -2.9 membrane protein compare
PS417_21125 -0.9 -3.2 phosphoadenosine phosphosulfate reductase compare
PS417_12650 -0.8 -1.7 magnesium transporter compare
PS417_14240 -0.8 -1.7 isochorismatase compare
PS417_01285 -0.8 -1.4 haloacid dehalogenase compare
PS417_08540 -0.8 -1.7 RNA helicase compare
PS417_03300 -0.8 -2.3 alanine acetyltransferase compare
PS417_18545 -0.8 -2.0 cell division protein compare
PS417_02475 -0.8 -1.9 N-acetylmuramoyl-L-alanine amidase compare
PS417_19600 -0.8 -0.8 exonuclease compare
PS417_27520 -0.8 -1.9 uroporphyrin-III methyltransferase compare
PS417_05860 -0.8 -1.7 hypothetical protein compare
PS417_13820 -0.8 -3.0 UDP-glucose 6-dehydrogenase compare
PS417_26150 -0.8 -2.2 acyltransferase compare
PS417_22520 -0.8 -1.3 histidine kinase compare
PS417_21375 -0.8 -2.6 ADP-ribosylglycohydrolase compare
PS417_26645 -0.8 -1.4 chemotaxis protein compare
PS417_03380 -0.8 -0.9 hypothetical protein compare
PS417_16465 -0.8 -3.6 sirohydrochlorin ferrochelatase compare
PS417_12520 -0.8 -1.7 hypothetical protein compare
PS417_23915 -0.8 -2.2 pantoate--beta-alanine ligase compare
PS417_08185 -0.8 -2.5 glycosyl transferase compare
PS417_14985 -0.8 -2.5 Fe-S protein compare
PS417_04365 -0.8 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23025 -0.8 -3.3 murein transglycosylase compare
PS417_14810 -0.8 -2.3 Fosmidomycin resistance protein compare
PS417_20030 -0.8 -2.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_16080 -0.8 -1.9 AraC family transcriptional regulator compare
PS417_13445 -0.8 -1.3 D-aminopeptidase compare
PS417_15110 -0.8 -2.6 protein BatD compare
PS417_15085 -0.8 -2.4 ATPase AAA compare
PS417_02950 -0.8 -1.8 tRNA-dihydrouridine synthase B compare
PS417_04935 -0.8 -4.1 hypothetical protein compare
PS417_06780 -0.8 -1.8 TetR family transcriptional regulator compare
PS417_08205 -0.8 -2.0 acetyltransferase compare
PS417_25390 -0.8 -2.4 MFS transporter compare
PS417_21210 -0.7 -2.1 amidotransferase compare
PS417_17125 -0.7 -2.7 transcriptional regulator compare
PS417_24935 -0.7 -1.0 hypothetical protein compare
PS417_22775 -0.7 -4.5 histidine kinase compare
PS417_05505 -0.7 -3.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_04390 -0.7 -1.7 toluene tolerance protein compare
PS417_07710 -0.7 -2.7 membrane protein compare
PS417_01560 -0.7 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_08245 -0.7 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19665 -0.7 -2.4 flagellar motor protein MotD compare
PS417_06465 -0.7 -2.3 transcriptional regulator compare
PS417_16490 -0.7 -1.1 cell division protein FtsK compare
PS417_16370 -0.7 -4.3 chemotaxis protein CheY compare
PS417_22350 -0.7 -1.4 Fis family transcriptional regulator compare
PS417_26805 -0.7 -0.7 cell division protein FtsE compare
PS417_24430 -0.7 -1.0 3-dehydroquinate dehydratase compare
PS417_22895 -0.7 -3.4 tyrosine recombinase XerD compare
PS417_12490 -0.7 -1.1 autotransporter adhesin compare
PS417_13185 -0.7 -1.7 RND transporter compare
PS417_01760 -0.7 -2.2 imidazolonepropionase compare
PS417_06095 -0.7 -1.2 energy transducer TonB compare
PS417_27040 -0.7 -1.5 3-phosphoglycerate dehydrogenase compare
PS417_23210 -0.7 -1.4 serine acetyltransferase compare
PS417_27815 -0.7 -0.8 hypothetical protein compare
PS417_15105 -0.7 -3.4 membrane protein compare
PS417_10455 -0.7 -2.2 membrane protein compare
PS417_14305 -0.7 -1.6 hydroxyproline-2-epimerase compare
PS417_09290 -0.7 -2.3 catalase compare
PS417_24085 -0.7 -1.8 protein RnfH compare
PS417_13255 -0.7 -1.5 ABC transporter compare
PS417_09995 -0.7 -2.2 regulatory protein compare
PS417_03965 -0.7 -3.1 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_03780 -0.7 -1.6 general secretion pathway protein GspH compare
PS417_02225 -0.7 -1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_28515 -0.7 -1.2 16S rRNA methyltransferase compare
PS417_21705 -0.7 -2.4 arginine N-succinyltransferase compare
PS417_02575 -0.7 -2.8 membrane protein compare
PS417_15400 -0.6 -1.0 hypothetical protein compare
PS417_12795 -0.6 -3.8 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_24800 -0.6 -2.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_00065 -0.6 -0.7 3-methyladenine DNA glycosylase compare
PS417_26370 -0.6 -2.3 RNA helicase compare
PS417_13895 -0.6 -1.6 chemotaxis protein CheB compare
PS417_04305 -0.6 -0.8 aspartate ammonia-lyase compare
PS417_13800 -0.6 -1.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_11180 -0.6 -1.6 TetR family transcriptional regulator compare
PS417_17190 -0.6 -2.0 MarR family transcriptional regulator compare
PS417_27445 -0.6 -2.9 membrane protein compare
PS417_15435 -0.6 -1.7 metallophosphatase compare
PS417_00920 -0.6 -2.3 diguanylate cyclase compare
PS417_16665 -0.6 -1.0 hypothetical protein compare
PS417_23385 -0.6 -2.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_26790 -0.6 -2.3 peptidoglycan transglycosylase compare
PS417_05065 -0.6 -1.0 hypothetical protein compare
PS417_22570 -0.6 -0.5 H-NS histone compare
PS417_27595 -0.6 -1.0 recombinase XerC compare
PS417_22640 -0.6 -1.6 cytochrome C biogenesis protein CcmE compare
PS417_03705 -0.6 -1.9 2-alkenal reductase compare
PS417_18495 -0.6 -1.5 hypothetical protein compare
PS417_13790 -0.6 -1.8 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_20520 -0.6 -2.3 3-phosphoglycerate kinase compare
PS417_24705 -0.6 -1.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_14890 -0.6 -1.1 LysR family transcriptional regulator compare
PS417_09220 -0.6 -1.7 cupin compare
PS417_17560 -0.6 -2.1 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_15745 -0.6 -1.0 lipid carrier protein compare
PS417_06200 -0.6 -2.6 protein-PII uridylyltransferase compare
PS417_02405 -0.6 -2.2 hypothetical protein compare
PS417_05475 -0.6 -2.7 arginase compare
PS417_09575 -0.6 -1.8 glutathione S-transferase compare
PS417_02185 -0.6 -2.5 type IV secretion protein Rhs compare
PS417_28030 -0.6 -1.0 hypothetical protein compare
PS417_23370 -0.6 -2.1 protoheme IX farnesyltransferase compare
PS417_15540 -0.6 -0.9 NUDIX hydrolase compare
PS417_04475 -0.6 -2.0 hypothetical protein compare
PS417_12660 -0.6 -0.7 hypothetical protein compare
PS417_24575 -0.6 -0.8 hypothetical protein compare
PS417_23810 -0.6 -3.8 acetolactate synthase 3 catalytic subunit compare
PS417_08130 -0.6 -1.0 aspartate aminotransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms