Experiment set14IT047 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_27795 -5.1 -1.9 orotate phosphoribosyltransferase compare
PS417_24745 -4.5 -6.2 gamma-glutamyl phosphate reductase compare
PS417_23545 -3.9 -3.1 gamma-glutamyl kinase compare
PS417_26730 -3.9 -2.0 pyrroline-5-carboxylate reductase compare
PS417_23770 -3.0 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_08125 -2.6 -0.9 prephenate dehydratase compare
PS417_13455 -2.6 -5.5 alkaline proteinase inhibitor compare
PS417_04650 -2.6 -1.3 D-alanine--D-alanine ligase compare
PS417_27870 -2.4 -5.1 ATP-dependent DNA helicase RecG compare
PS417_27800 -2.4 -2.3 exodeoxyribonuclease III compare
PS417_23950 -2.2 -2.7 polynucleotide phosphorylase/polyadenylase compare
PS417_02280 -2.1 -2.0 GlcNAc-PI de-N-acetylase compare
PS417_07170 -2.1 -4.2 hypothetical protein compare
PS417_03260 -2.0 -1.8 5S ribosomal RNA compare
PS417_27195 -2.0 -1.6 N-acetylglutamate synthase compare
PS417_17610 -1.8 -1.5 AsnC family transcriptional regulator compare
PS417_22445 -1.8 -3.6 ATP-dependent DNA helicase RuvB compare
PS417_08245 -1.7 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27245 -1.7 -3.9 aminotransferase DegT compare
PS417_20985 -1.7 -1.9 porin compare
PS417_05830 -1.7 -4.4 hypothetical protein compare
PS417_01915 -1.7 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21125 -1.6 -5.7 phosphoadenosine phosphosulfate reductase compare
PS417_08130 -1.6 -2.9 aspartate aminotransferase compare
PS417_01605 -1.6 -1.4 phosphoglycerate mutase compare
PS417_18310 -1.5 -1.2 hypothetical protein compare
PS417_18545 -1.5 -4.3 cell division protein compare
PS417_25710 -1.5 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_27865 -1.5 -3.8 LysR family transcriptional regulator compare
PS417_20160 -1.5 -3.8 cysteine synthase compare
PS417_04275 -1.5 -10.0 hypothetical protein compare
PS417_28230 -1.4 -2.2 transcriptional regulator compare
PS417_15285 -1.4 -1.4 type VI secretion protein compare
PS417_02365 -1.4 -3.0 hypothetical protein compare
PS417_03815 -1.4 -2.2 DNA transporter compare
PS417_22450 -1.4 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_17240 -1.4 -2.9 trigger factor compare
PS417_11615 -1.3 -1.6 urea ABC transporter ATP-binding protein compare
PS417_08410 -1.3 -3.6 hypothetical protein compare
PS417_28350 -1.3 -4.9 fatty acid methyltransferase compare
PS417_11440 -1.3 -2.0 hypothetical protein compare
PS417_17215 -1.2 -3.1 peptidylprolyl isomerase compare
PS417_03515 -1.2 -1.9 type III secretion protein compare
PS417_20785 -1.2 -3.3 transcriptional regulator compare
PS417_14235 -1.2 -3.2 hypothetical protein compare
PS417_10985 -1.2 -1.0 NADH:flavin oxidoreductase compare
PS417_16195 -1.2 -1.1 AraC family transcriptional regulator compare
PS417_22575 -1.1 -5.2 exonuclease I compare
PS417_21480 -1.1 -1.2 23S rRNA pseudouridylate synthase compare
PS417_26685 -1.1 -2.0 hypothetical protein compare
PS417_13895 -1.1 -2.2 chemotaxis protein CheB compare
PS417_27300 -1.1 -0.8 cell division protein ZapA compare
PS417_02270 -1.1 -3.1 carbamoyltransferase compare
PS417_22050 -1.1 -3.9 ribonuclease BN compare
PS417_21430 -1.1 -1.3 3-oxoacyl-ACP synthase compare
PS417_08335 -1.1 -1.5 hypothetical protein compare
PS417_26985 -1.1 -5.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11705 -1.1 -5.6 cyclic peptide transporter compare
PS417_27040 -1.1 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_08135 -1.1 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07140 -1.0 -3.2 peptidase M48 compare
PS417_00370 -1.0 -1.1 hypothetical protein compare
PS417_04915 -1.0 -1.4 glutamine ABC transporter ATP-binding protein compare
PS417_02575 -1.0 -3.2 membrane protein compare
PS417_26155 -1.0 -1.9 hypothetical protein compare
PS417_26335 -0.9 -2.0 BetI family transcriptional regulator compare
PS417_07120 -0.9 -4.1 RNA polymerase sigma-H factor compare
PS417_16490 -0.9 -0.8 cell division protein FtsK compare
PS417_20855 -0.9 -1.2 hypothetical protein compare
PS417_15090 -0.9 -2.3 hypothetical protein compare
PS417_12535 -0.9 -1.8 nitrilase compare
PS417_07455 -0.9 -1.7 glutamine amidotransferase compare
PS417_25315 -0.9 -3.4 membrane protein compare
PS417_21495 -0.9 -2.8 lipoprotein compare
PS417_05510 -0.9 -3.0 alpha/beta hydrolase compare
PS417_06530 -0.9 -1.8 membrane protein compare
PS417_04390 -0.9 -3.0 toluene tolerance protein compare
PS417_15745 -0.9 -1.1 lipid carrier protein compare
PS417_18425 -0.9 -1.5 sporulation protein compare
PS417_07710 -0.9 -2.5 membrane protein compare
PS417_19675 -0.8 -4.8 chemotaxis protein CheY compare
PS417_16465 -0.8 -4.9 sirohydrochlorin ferrochelatase compare
PS417_13185 -0.8 -1.8 RND transporter compare
PS417_27135 -0.8 -0.6 glutamine synthetase compare
PS417_27605 -0.8 -4.3 hypothetical protein compare
PS417_13055 -0.8 -1.5 aminotransferase compare
PS417_04590 -0.8 -3.2 methyltransferase compare
PS417_16510 -0.8 -3.4 Clp protease ClpX compare
PS417_23025 -0.8 -3.2 murein transglycosylase compare
PS417_21625 -0.8 -0.9 DNA-binding protein compare
PS417_20740 -0.8 -4.5 prevent-host-death protein compare
PS417_20720 -0.8 -2.7 cbb3-type cytochrome c oxidase subunit I compare
PS417_09915 -0.8 -1.3 hypothetical protein compare
PS417_15540 -0.8 -0.9 NUDIX hydrolase compare
PS417_21210 -0.8 -1.8 amidotransferase compare
PS417_02415 -0.8 -1.7 phosphoserine phosphatase compare
PS417_24935 -0.8 -1.1 hypothetical protein compare
PS417_08945 -0.8 -3.8 heat shock protein 90 compare
PS417_21000 -0.8 -1.6 CrfX protein compare
PS417_26060 -0.8 -2.0 DNA polymerase III subunit epsilon compare
PS417_22775 -0.8 -4.0 histidine kinase compare
PS417_15105 -0.8 -3.7 membrane protein compare
PS417_17490 -0.8 -1.8 ABC transporter ATP-binding protein compare
PS417_02975 -0.8 -1.3 3-dehydroquinate dehydratase compare
PS417_00315 -0.8 -2.6 MFS transporter compare
PS417_25825 -0.8 -1.4 sulfurtransferase compare
PS417_10145 -0.8 -1.4 hypothetical protein compare
PS417_03475 -0.8 -0.9 type III secretion protein compare
PS417_07615 -0.8 -2.9 TetR family transcriptional regulator compare
PS417_05865 -0.8 -1.7 hypothetical protein compare
PS417_24500 -0.8 -2.2 DEAD/DEAH box helicase compare
PS417_05045 -0.7 -2.6 acetamidase compare
PS417_03145 -0.7 -2.1 acetyl-CoA acetyltransferase compare
PS417_22520 -0.7 -1.0 histidine kinase compare
PS417_05500 -0.7 -1.5 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_09325 -0.7 -3.5 peptidase S41 compare
PS417_03705 -0.7 -2.4 2-alkenal reductase compare
PS417_27770 -0.7 -1.8 hypothetical protein compare
PS417_28280 -0.7 -1.8 hypothetical protein compare
PS417_23375 -0.7 -1.2 cytochrome C oxidase compare
PS417_00180 -0.7 -1.2 tryptophan synthase subunit alpha compare
PS417_12870 -0.7 -0.9 enoyl-CoA hydratase compare
PS417_20980 -0.7 -4.1 uroporphyrin-III methyltransferase compare
PS417_24585 -0.7 -4.9 AMP nucleosidase compare
PS417_18710 -0.7 -3.0 hypothetical protein compare
PS417_08990 -0.7 -2.5 ABC transporter substrate-binding protein compare
PS417_08685 -0.7 -0.9 flagellar hook-length control protein FliK compare
PS417_05300 -0.7 -4.1 glucose dehydrogenase compare
PS417_08200 -0.7 -2.0 hypothetical protein compare
PS417_08190 -0.7 -4.9 membrane protein compare
PS417_07950 -0.7 -1.7 MFS transporter compare
PS417_03300 -0.7 -1.4 alanine acetyltransferase compare
PS417_19650 -0.7 -2.4 chemotaxis protein CheW compare
PS417_14825 -0.7 -1.5 hypothetical protein compare
PS417_07770 -0.7 -1.3 hypothetical protein compare
PS417_19620 -0.7 -1.1 hypothetical protein compare
PS417_06100 -0.7 -1.3 SAM-dependent methyltransferase compare
PS417_26605 -0.7 -0.6 malonate decarboxylase subunit beta compare
PS417_12795 -0.7 -3.8 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_13190 -0.7 -3.7 transporter compare
PS417_03455 -0.7 -1.2 type III secretion protein compare
PS417_16160 -0.7 -1.4 ABC transporter substrate-binding protein compare
PS417_08185 -0.7 -3.1 glycosyl transferase compare
PS417_17190 -0.7 -1.8 MarR family transcriptional regulator compare
PS417_06730 -0.7 -0.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_11520 -0.7 -1.7 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_24525 -0.7 -1.3 nuclease compare
PS417_05505 -0.7 -3.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_28525 -0.7 -3.0 RNA polymerase sigma factor compare
PS417_12805 -0.7 -4.1 glycogen branching protein compare
PS417_13050 -0.7 -1.2 N-acetylglucosamine-6-sulfatase compare
PS417_18195 -0.7 -2.5 3-(3-hydroxyphenyl)propionate hydroxylase compare
PS417_09695 -0.6 -0.8 hydrolase compare
PS417_10480 -0.6 -1.3 glutathione S-transferase compare
PS417_11930 -0.6 -3.1 hypothetical protein compare
PS417_15095 -0.6 -1.9 hypothetical protein compare
PS417_21630 -0.6 -0.9 magnesium transporter compare
PS417_20930 -0.6 -3.2 50S rRNA methyltransferase compare
PS417_27110 -0.6 -2.4 spermidine/putrescine ABC transporter permease compare
PS417_05475 -0.6 -2.0 arginase compare
PS417_25390 -0.6 -2.6 MFS transporter compare
PS417_23160 -0.6 -1.4 50S rRNA methyltransferase compare
PS417_16000 -0.6 -0.9 chemotaxis protein CheY compare
PS417_18235 -0.6 -2.1 nitrile hydratase compare
PS417_23135 -0.6 -0.7 GTP-binding protein compare
PS417_18920 -0.6 -1.5 hypothetical protein compare
PS417_07755 -0.6 -4.3 hypothetical protein compare
PS417_10720 -0.6 -1.7 chemotaxis protein CheY compare
PS417_06365 -0.6 -3.2 RNA polymerase sigma factor compare
PS417_20080 -0.6 -2.6 peptidase P60 compare
PS417_18010 -0.6 -2.0 acid phosphatase compare
PS417_26010 -0.6 -2.3 amidophosphoribosyltransferase compare
PS417_01975 -0.6 -2.4 pilus assembly protein PilQ compare
PS417_02225 -0.6 -1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_08230 -0.6 -0.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_22895 -0.6 -3.0 tyrosine recombinase XerD compare
PS417_10615 -0.6 -1.9 hypothetical protein compare
PS417_15180 -0.6 -2.2 acyl dehydratase compare
PS417_15450 -0.6 -1.5 ABC transporter permease compare
PS417_20950 -0.6 -2.4 hypothetical protein compare
PS417_23810 -0.6 -3.4 acetolactate synthase 3 catalytic subunit compare
PS417_21845 -0.6 -1.0 membrane protein compare
PS417_15110 -0.6 -1.8 protein BatD compare
PS417_01920 -0.6 -0.7 ATP-dependent protease subunit HslV compare
PS417_25295 -0.6 -2.0 hypothetical protein compare
PS417_06540 -0.6 -0.7 membrane protein compare
PS417_09590 -0.6 -2.1 membrane protein compare
PS417_09245 -0.6 -0.7 recombinase RdgC compare
PS417_16370 -0.6 -3.5 chemotaxis protein CheY compare
PS417_13205 -0.6 -0.8 isochorismate-pyruvate lyase compare
PS417_02045 -0.6 -2.0 3-oxoacyl-ACP synthase compare
PS417_03810 -0.6 -1.9 hypothetical protein compare
PS417_04375 -0.6 -0.9 ABC transporter ATP-binding protein compare
PS417_17590 -0.6 -1.2 ABC transporter substrate-binding protein compare
PS417_18530 -0.6 -2.5 O-succinylhomoserine sulfhydrylase compare
PS417_10865 -0.6 -1.3 GNAT family acetyltransferase compare
PS417_17140 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_24575 -0.6 -0.8 hypothetical protein compare
PS417_00440 -0.6 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_13640 -0.5 -1.1 ribose ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms