Experiment set14IT045 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.2 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_24745 -5.8 -6.9 gamma-glutamyl phosphate reductase compare
PS417_18600 -5.8 -4.4 isopropylmalate isomerase compare
PS417_25720 -5.1 -8.2 anthranilate synthase component II compare
PS417_18595 -5.0 -4.9 3-isopropylmalate dehydratase compare
PS417_27795 -5.0 -1.7 orotate phosphoribosyltransferase compare
PS417_23805 -4.9 -5.9 acetolactate synthase 3 regulatory subunit compare
PS417_01855 -4.9 -4.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_01565 -4.5 -3.5 imidazole glycerol phosphate synthase compare
PS417_23995 -4.4 -1.5 preprotein translocase subunit SecG compare
PS417_04415 -4.4 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26745 -4.4 -9.2 methionine biosynthesis protein MetW compare
PS417_02005 -4.3 -10.3 glutamate synthase compare
PS417_23800 -4.2 -14.8 ketol-acid reductoisomerase compare
PS417_01570 -4.1 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_18560 -4.1 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_00185 -3.9 -4.1 tryptophan synthase subunit beta compare
PS417_00180 -3.9 -2.7 tryptophan synthase subunit alpha compare
PS417_01580 -3.9 -1.7 imidazole glycerol phosphate synthase compare
PS417_01575 -3.9 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26740 -3.8 -11.3 homoserine acetyltransferase compare
PS417_23810 -3.8 -10.4 acetolactate synthase 3 catalytic subunit compare
PS417_26730 -3.8 -1.9 pyrroline-5-carboxylate reductase compare
PS417_25725 -3.6 -14.2 anthranilate synthase component I compare
PS417_27195 -3.5 -1.7 N-acetylglutamate synthase compare
PS417_04420 -3.5 -8.2 histidinol dehydrogenase compare
PS417_23545 -3.5 -1.9 gamma-glutamyl kinase compare
PS417_16465 -3.4 -7.5 sirohydrochlorin ferrochelatase compare
PS417_26890 -3.4 -7.1 dihydroxy-acid dehydratase compare
PS417_02415 -3.3 -5.4 phosphoserine phosphatase compare
PS417_02000 -3.3 -11.9 glutamate synthase compare
PS417_01850 -3.2 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_05595 -3.2 -8.8 ornithine carbamoyltransferase compare
PS417_12290 -3.2 -5.9 sulfite reductase compare
PS417_18585 -3.2 -7.4 3-isopropylmalate dehydrogenase compare
PS417_21125 -3.1 -8.5 phosphoadenosine phosphosulfate reductase compare
PS417_20160 -3.1 -5.5 cysteine synthase compare
PS417_02510 -3.0 -5.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23915 -2.9 -4.6 pantoate--beta-alanine ligase compare
PS417_20985 -2.9 -2.0 porin compare
PS417_25715 -2.9 -6.1 anthranilate phosphoribosyltransferase compare
PS417_07170 -2.9 -6.8 hypothetical protein compare
PS417_25710 -2.6 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_01560 -2.6 -2.7 imidazoleglycerol-phosphate dehydratase compare
PS417_18530 -2.6 -3.2 O-succinylhomoserine sulfhydrylase compare
PS417_12855 -2.5 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17215 -2.5 -4.4 peptidylprolyl isomerase compare
PS417_04650 -2.5 -1.2 D-alanine--D-alanine ligase compare
PS417_23770 -2.4 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_26995 -2.3 -6.3 phosphoserine phosphatase compare
PS417_03310 -2.2 -4.7 carbonate dehydratase compare
PS417_06375 -2.2 -1.3 deoxycytidine triphosphate deaminase compare
PS417_13455 -2.2 -4.2 alkaline proteinase inhibitor compare
PS417_23110 -2.1 -4.7 2-isopropylmalate synthase compare
PS417_27835 -2.1 -5.3 endoribonuclease compare
PS417_22690 -2.1 -4.8 phosphogluconate dehydratase compare
PS417_08245 -2.1 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_26985 -2.0 -4.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_03925 -2.0 -5.9 nicotinate-nucleotide pyrophosphorylase compare
PS417_04305 -2.0 -1.8 aspartate ammonia-lyase compare
PS417_08410 -1.9 -4.2 hypothetical protein compare
PS417_20610 -1.9 -1.3 hypothetical protein compare
PS417_27800 -1.9 -2.6 exodeoxyribonuclease III compare
PS417_27870 -1.8 -3.6 ATP-dependent DNA helicase RecG compare
PS417_08230 -1.7 -2.8 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21430 -1.7 -1.9 3-oxoacyl-ACP synthase compare
PS417_06245 -1.7 -1.5 zinc metallopeptidase RseP compare
PS417_24935 -1.7 -1.6 hypothetical protein compare
PS417_17565 -1.6 -3.6 branched-chain amino acid aminotransferase compare
PS417_26605 -1.6 -1.3 malonate decarboxylase subunit beta compare
PS417_05455 -1.6 -5.1 XRE family transcriptional regulator compare
PS417_00175 -1.6 -1.3 CigR compare
PS417_16490 -1.6 -2.0 cell division protein FtsK compare
PS417_26990 -1.6 -1.0 RNA pyrophosphohydrolase compare
PS417_22210 -1.5 -2.2 AraC family transcriptional regulator compare
PS417_17240 -1.5 -3.3 trigger factor compare
PS417_26695 -1.5 -1.3 uracil phosphoribosyltransferase compare
PS417_22385 -1.5 -7.2 quinolinate synthase A compare
PS417_21480 -1.4 -1.5 23S rRNA pseudouridylate synthase compare
PS417_18770 -1.4 -4.8 hypothetical protein compare
PS417_00370 -1.4 -1.2 hypothetical protein compare
PS417_05830 -1.4 -5.2 hypothetical protein compare
PS417_03560 -1.4 -1.3 GTP-binding protein compare
PS417_01605 -1.4 -1.1 phosphoglycerate mutase compare
PS417_22050 -1.3 -3.0 ribonuclease BN compare
PS417_22445 -1.3 -4.2 ATP-dependent DNA helicase RuvB compare
PS417_18775 -1.3 -3.3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_15090 -1.3 -1.7 hypothetical protein compare
PS417_02365 -1.3 -3.4 hypothetical protein compare
PS417_11440 -1.2 -1.9 hypothetical protein compare
PS417_08205 -1.2 -4.6 acetyltransferase compare
PS417_08130 -1.2 -2.5 aspartate aminotransferase compare
PS417_13545 -1.2 -2.3 arginine aminotransferase compare
PS417_20785 -1.2 -3.6 transcriptional regulator compare
PS417_04875 -1.2 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_11705 -1.2 -4.5 cyclic peptide transporter compare
PS417_13195 -1.2 -2.8 RND transporter MFP subunit compare
PS417_05500 -1.2 -1.5 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_17980 -1.2 -2.4 ABC transporter permease compare
PS417_02950 -1.2 -2.1 tRNA-dihydrouridine synthase B compare
PS417_20125 -1.2 -2.7 phosphoribosylglycinamide formyltransferase compare
PS417_02255 -1.2 -2.3 lipopolysaccharide kinase compare
PS417_03705 -1.2 -4.1 2-alkenal reductase compare
PS417_08155 -1.2 -0.8 integration host factor subunit beta compare
PS417_01270 -1.2 -1.4 iron ABC transporter substrate-binding protein compare
PS417_18545 -1.1 -3.1 cell division protein compare
PS417_03815 -1.1 -1.6 DNA transporter compare
PS417_00940 -1.1 -4.2 sulfate ABC transporter permease compare
PS417_03260 -1.1 -1.4 5S ribosomal RNA compare
PS417_18710 -1.1 -4.7 hypothetical protein compare
PS417_21270 -1.1 -1.8 translation initiation factor 2 compare
PS417_13165 -1.1 -1.4 peroxidase compare
PS417_27435 -1.1 -4.0 polyphosphate kinase compare
PS417_22520 -1.1 -1.3 histidine kinase compare
PS417_07140 -1.1 -3.0 peptidase M48 compare
PS417_23380 -1.1 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_18690 -1.0 -2.0 aromatic amino acid aminotransferase compare
PS417_08190 -1.0 -6.9 membrane protein compare
PS417_27865 -1.0 -1.8 LysR family transcriptional regulator compare
PS417_07120 -1.0 -4.0 RNA polymerase sigma-H factor compare
PS417_04275 -1.0 -7.3 hypothetical protein compare
PS417_24600 -1.0 -4.5 hydrogenase compare
PS417_18235 -1.0 -2.6 nitrile hydratase compare
PS417_05850 -1.0 -3.3 LysR family transcriptional regulator compare
PS417_24460 -1.0 -1.6 hypothetical protein compare
PS417_25765 -1.0 -1.5 transcriptional regulator compare
PS417_04185 -1.0 -1.5 hypothetical protein compare
PS417_06730 -1.0 -1.4 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_18310 -1.0 -1.2 hypothetical protein compare
PS417_00190 -1.0 -1.9 LysR family transcriptional regulator compare
PS417_28350 -1.0 -3.5 fatty acid methyltransferase compare
PS417_25155 -1.0 -1.3 hypothetical protein compare
PS417_10995 -1.0 -1.6 GntR family transcriptional regulator compare
PS417_18425 -1.0 -1.5 sporulation protein compare
PS417_13185 -1.0 -1.8 RND transporter compare
PS417_00225 -1.0 -2.6 hypothetical protein compare
PS417_13895 -0.9 -2.9 chemotaxis protein CheB compare
PS417_16665 -0.9 -1.4 hypothetical protein compare
PS417_02280 -0.9 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_15085 -0.9 -2.3 ATPase AAA compare
PS417_11810 -0.9 -1.7 oxidoreductase compare
PS417_05510 -0.9 -3.3 alpha/beta hydrolase compare
PS417_02740 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_08185 -0.9 -2.8 glycosyl transferase compare
PS417_22575 -0.9 -4.1 exonuclease I compare
PS417_23830 -0.9 -5.3 hypothetical protein compare
PS417_09545 -0.9 -2.1 aldehyde-activating protein compare
PS417_27300 -0.9 -0.6 cell division protein ZapA compare
PS417_08665 -0.9 -3.9 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_24605 -0.9 -1.9 thiamine-phosphate pyrophosphorylase compare
PS417_05810 -0.9 -2.9 damage-inducible protein CinA compare
PS417_22775 -0.9 -5.9 histidine kinase compare
PS417_06150 -0.9 -2.2 SAM-dependent methlyltransferase compare
PS417_07410 -0.9 -1.7 hypothetical protein compare
PS417_07115 -0.9 -5.2 L-aspartate oxidase compare
PS417_18920 -0.9 -1.7 hypothetical protein compare
PS417_26775 -0.9 -3.0 thiazole synthase compare
PS417_23025 -0.8 -3.2 murein transglycosylase compare
PS417_27605 -0.8 -3.1 hypothetical protein compare
PS417_22620 -0.8 -2.5 pyruvate kinase compare
PS417_04390 -0.8 -2.5 toluene tolerance protein compare
PS417_22450 -0.8 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_13510 -0.8 -0.9 polyketide cyclase compare
PS417_17285 -0.8 -3.7 hypothetical protein compare
PS417_15285 -0.8 -0.9 type VI secretion protein compare
PS417_02455 -0.8 -2.5 putative transporter, required for glycine utilization (from data) compare
PS417_21220 -0.8 -2.4 acetyl-CoA acetyltransferase compare
PS417_19630 -0.8 -1.6 LuxR family transcriptional regulator compare
PS417_04375 -0.8 -1.3 ABC transporter ATP-binding protein compare
PS417_23615 -0.8 -2.0 sulfate transporter compare
PS417_06745 -0.8 -1.6 polysaccharide deacetylase compare
PS417_22570 -0.8 -0.7 H-NS histone compare
PS417_27315 -0.8 -0.8 hypothetical protein compare
PS417_23820 -0.8 -2.0 hypothetical protein compare
PS417_14065 -0.8 -3.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08195 -0.8 -3.7 hypothetical protein compare
PS417_06780 -0.8 -2.6 TetR family transcriptional regulator compare
PS417_11125 -0.8 -1.6 hypothetical protein compare
PS417_10275 -0.8 -1.3 histidine kinase compare
PS417_08685 -0.8 -1.3 flagellar hook-length control protein FliK compare
PS417_22000 -0.8 -1.8 glutathione S-transferase compare
PS417_27245 -0.8 -2.3 aminotransferase DegT compare
PS417_09220 -0.8 -1.3 cupin compare
PS417_15465 -0.8 -1.6 carboxynorspermidine decarboxylase compare
PS417_25390 -0.8 -2.9 MFS transporter compare
PS417_04385 -0.8 -1.7 organic solvent ABC transporter substrate-binding protein compare
PS417_07595 -0.8 -1.7 PasA protein compare
PS417_11950 -0.8 -1.1 hypothetical protein compare
PS417_04050 -0.8 -1.4 peptide ABC transporter ATP-binding protein compare
PS417_13190 -0.8 -3.9 transporter compare
PS417_17795 -0.8 -1.1 ABC transporter permease compare
PS417_04365 -0.8 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_05905 -0.7 -1.4 hypothetical protein compare
PS417_00920 -0.7 -2.1 diguanylate cyclase compare
PS417_16555 -0.7 -0.7 cupin compare
PS417_21855 -0.7 -1.4 hypothetical protein compare
PS417_22580 -0.7 -1.9 membrane protein compare
PS417_25315 -0.7 -3.2 membrane protein compare
PS417_01875 -0.7 -1.4 polyhydroxyalkanoic acid system protein compare
PS417_09205 -0.7 -3.2 membrane protein compare


Specific Phenotypes

For 2 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered across organisms