Experiment set14IT044 for Pseudomonas simiae WCS417

Compare to:

Vogels_fungal_media; pH 5.5

200 most important genes:

  gene name fitness t score description  
PS417_23805 -6.4 -5.7 acetolactate synthase 3 regulatory subunit compare
PS417_01855 -6.3 -3.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_24745 -6.0 -7.2 gamma-glutamyl phosphate reductase compare
PS417_27795 -5.1 -1.8 orotate phosphoribosyltransferase compare
PS417_18585 -4.6 -7.7 3-isopropylmalate dehydrogenase compare
PS417_01575 -4.6 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23995 -4.6 -1.6 preprotein translocase subunit SecG compare
PS417_01850 -4.4 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18600 -4.4 -4.4 isopropylmalate isomerase compare
PS417_25710 -4.4 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_01560 -4.3 -4.1 imidazoleglycerol-phosphate dehydratase compare
PS417_27040 -4.3 -4.4 3-phosphoglycerate dehydrogenase compare
PS417_26740 -4.2 -9.8 homoserine acetyltransferase compare
PS417_23800 -4.1 -13.6 ketol-acid reductoisomerase compare
PS417_18560 -4.1 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26730 -4.0 -1.9 pyrroline-5-carboxylate reductase compare
PS417_23545 -3.8 -3.0 gamma-glutamyl kinase compare
PS417_23810 -3.8 -10.8 acetolactate synthase 3 catalytic subunit compare
PS417_25720 -3.7 -8.6 anthranilate synthase component II compare
PS417_04415 -3.6 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27195 -3.6 -1.7 N-acetylglutamate synthase compare
PS417_02005 -3.6 -8.8 glutamate synthase compare
PS417_23915 -3.6 -7.1 pantoate--beta-alanine ligase compare
PS417_04420 -3.5 -9.1 histidinol dehydrogenase compare
PS417_00180 -3.5 -3.3 tryptophan synthase subunit alpha compare
PS417_07170 -3.4 -6.6 hypothetical protein compare
PS417_26745 -3.4 -5.4 methionine biosynthesis protein MetW compare
PS417_25725 -3.3 -12.9 anthranilate synthase component I compare
PS417_21125 -3.2 -11.3 phosphoadenosine phosphosulfate reductase compare
PS417_02000 -3.2 -11.6 glutamate synthase compare
PS417_05595 -3.2 -7.8 ornithine carbamoyltransferase compare
PS417_03310 -3.2 -6.5 carbonate dehydratase compare
PS417_20160 -3.0 -3.6 cysteine synthase compare
PS417_28220 -3.0 -2.4 LysR family transcriptional regulator compare
PS417_18530 -3.0 -4.0 O-succinylhomoserine sulfhydrylase compare
PS417_16465 -2.8 -8.6 sirohydrochlorin ferrochelatase compare
PS417_25715 -2.8 -4.9 anthranilate phosphoribosyltransferase compare
PS417_01565 -2.8 -3.6 imidazole glycerol phosphate synthase compare
PS417_18595 -2.8 -3.4 3-isopropylmalate dehydratase compare
PS417_12290 -2.7 -7.9 sulfite reductase compare
PS417_08130 -2.7 -4.4 aspartate aminotransferase compare
PS417_08125 -2.7 -0.9 prephenate dehydratase compare
PS417_26890 -2.6 -4.1 dihydroxy-acid dehydratase compare
PS417_27800 -2.6 -1.8 exodeoxyribonuclease III compare
PS417_22690 -2.6 -5.5 phosphogluconate dehydratase compare
PS417_01580 -2.6 -2.5 imidazole glycerol phosphate synthase compare
PS417_23770 -2.6 -2.1 exodeoxyribonuclease V subunit alpha compare
PS417_02510 -2.5 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_06375 -2.5 -1.5 deoxycytidine triphosphate deaminase compare
PS417_22445 -2.5 -5.9 ATP-dependent DNA helicase RuvB compare
PS417_26995 -2.5 -8.5 phosphoserine phosphatase compare
PS417_02415 -2.4 -4.5 phosphoserine phosphatase compare
PS417_23110 -2.3 -5.5 2-isopropylmalate synthase compare
PS417_00185 -2.3 -4.6 tryptophan synthase subunit beta compare
PS417_12855 -2.2 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07470 -2.2 -1.7 hypothetical protein compare
PS417_04380 -2.1 -1.2 ABC transporter permease compare
PS417_27435 -2.1 -6.8 polyphosphate kinase compare
PS417_26695 -2.1 -1.5 uracil phosphoribosyltransferase compare
PS417_03560 -2.0 -1.9 GTP-binding protein compare
PS417_01605 -2.0 -1.7 phosphoglycerate mutase compare
PS417_13455 -1.9 -5.2 alkaline proteinase inhibitor compare
PS417_26985 -1.9 -9.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27835 -1.9 -4.5 endoribonuclease compare
PS417_03925 -1.8 -8.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_01570 -1.8 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_18690 -1.8 -3.2 aromatic amino acid aminotransferase compare
PS417_27870 -1.8 -4.6 ATP-dependent DNA helicase RecG compare
PS417_23910 -1.8 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_08155 -1.7 -1.2 integration host factor subunit beta compare
PS417_18425 -1.7 -2.4 sporulation protein compare
PS417_23950 -1.7 -2.3 polynucleotide phosphorylase/polyadenylase compare
PS417_22385 -1.6 -7.2 quinolinate synthase A compare
PS417_23580 -1.6 -1.2 peptidylprolyl isomerase compare
PS417_06685 -1.6 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_21430 -1.6 -1.7 3-oxoacyl-ACP synthase compare
PS417_08245 -1.5 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_06145 -1.5 -1.3 hypothetical protein compare
PS417_21705 -1.5 -5.2 arginine N-succinyltransferase compare
PS417_17215 -1.5 -3.4 peptidylprolyl isomerase compare
PS417_02365 -1.4 -2.7 hypothetical protein compare
PS417_01920 -1.4 -1.1 ATP-dependent protease subunit HslV compare
PS417_11440 -1.4 -2.5 hypothetical protein compare
PS417_17160 -1.4 -1.9 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_06245 -1.4 -2.1 zinc metallopeptidase RseP compare
PS417_21655 -1.3 -1.3 aspartate kinase compare
PS417_04275 -1.3 -10.1 hypothetical protein compare
PS417_03260 -1.3 -1.6 5S ribosomal RNA compare
PS417_11705 -1.3 -5.0 cyclic peptide transporter compare
PS417_02950 -1.3 -3.2 tRNA-dihydrouridine synthase B compare
PS417_21360 -1.3 -1.2 termination factor Rho compare
PS417_27155 -1.3 -1.8 aliphatic sulfonates transport ATP-binding subunit compare
PS417_22565 -1.3 -0.8 formyltetrahydrofolate deformylase compare
PS417_22450 -1.2 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_05820 -1.2 -2.5 recombinase RecX compare
PS417_15090 -1.2 -2.9 hypothetical protein compare
PS417_03935 -1.2 -3.5 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_06200 -1.2 -5.2 protein-PII uridylyltransferase compare
PS417_15105 -1.2 -4.1 membrane protein compare
PS417_14295 -1.2 -2.6 AraC family transcriptional regulator compare
PS417_24935 -1.2 -1.4 hypothetical protein compare
PS417_04375 -1.2 -1.8 ABC transporter ATP-binding protein compare
PS417_12755 -1.2 -2.2 RND transporter compare
PS417_07120 -1.2 -4.9 RNA polymerase sigma-H factor compare
PS417_08190 -1.2 -7.6 membrane protein compare
PS417_26990 -1.2 -1.0 RNA pyrophosphohydrolase compare
PS417_07710 -1.2 -4.0 membrane protein compare
PS417_17125 -1.2 -4.1 transcriptional regulator compare
PS417_12565 -1.2 -2.3 2-dehydro-3-deoxygluconokinase compare
PS417_15935 -1.1 -2.3 Rrf2 family transcriptional regulator compare
PS417_28350 -1.1 -4.2 fatty acid methyltransferase compare
PS417_21000 -1.1 -1.4 CrfX protein compare
PS417_08230 -1.1 -2.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21065 -1.1 -1.7 3-methylitaconate isomerase compare
PS417_05505 -1.1 -4.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_08185 -1.0 -3.2 glycosyl transferase compare
PS417_25315 -1.0 -3.8 membrane protein compare
PS417_17035 -1.0 -1.3 Cro/Cl family transcriptional regulator compare
PS417_08200 -1.0 -2.4 hypothetical protein compare
PS417_20785 -1.0 -2.6 transcriptional regulator compare
PS417_02270 -1.0 -2.9 carbamoyltransferase compare
PS417_18040 -1.0 -1.4 general secretion pathway protein GspN compare
PS417_18310 -1.0 -1.2 hypothetical protein compare
PS417_04390 -1.0 -2.7 toluene tolerance protein compare
PS417_05830 -1.0 -2.8 hypothetical protein compare
PS417_17610 -1.0 -1.1 AsnC family transcriptional regulator compare
PS417_12325 -1.0 -2.4 precorrin-4 C11-methyltransferase compare
PS417_02475 -1.0 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_22050 -1.0 -3.9 ribonuclease BN compare
PS417_23360 -1.0 -0.9 hypothetical protein compare
PS417_03300 -1.0 -2.6 alanine acetyltransferase compare
PS417_08685 -1.0 -1.1 flagellar hook-length control protein FliK compare
PS417_10715 -1.0 -2.5 Cro/Cl family transcriptional regulator compare
PS417_06945 -1.0 -1.1 membrane protein compare
PS417_26850 -0.9 -0.6 twin-arginine translocation pathway signal protein compare
PS417_17240 -0.9 -2.0 trigger factor compare
PS417_00190 -0.9 -2.5 LysR family transcriptional regulator compare
PS417_17835 -0.9 -3.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_08225 -0.9 -3.2 acetolactate synthase compare
PS417_14235 -0.9 -2.0 hypothetical protein compare
PS417_04385 -0.9 -2.4 organic solvent ABC transporter substrate-binding protein compare
PS417_03455 -0.9 -0.8 type III secretion protein compare
PS417_12935 -0.9 -2.2 RNA polymerase sigma factor compare
PS417_17900 -0.9 -1.6 transcriptional regulator compare
PS417_07945 -0.9 -2.4 hypothetical protein compare
PS417_11180 -0.9 -2.1 TetR family transcriptional regulator compare
PS417_25390 -0.9 -3.0 MFS transporter compare
PS417_04305 -0.9 -1.0 aspartate ammonia-lyase compare
PS417_14240 -0.9 -2.1 isochorismatase compare
PS417_03815 -0.8 -1.6 DNA transporter compare
PS417_21480 -0.8 -1.1 23S rRNA pseudouridylate synthase compare
PS417_00975 -0.8 -1.3 hypothetical protein compare
PS417_21700 -0.8 -2.4 arginine N-succinyltransferase compare
PS417_27245 -0.8 -2.6 aminotransferase DegT compare
PS417_19675 -0.8 -2.4 chemotaxis protein CheY compare
PS417_20125 -0.8 -2.3 phosphoribosylglycinamide formyltransferase compare
PS417_02485 -0.8 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24310 -0.8 -2.5 ankyrin compare
PS417_08195 -0.8 -4.3 hypothetical protein compare
PS417_16475 -0.8 -1.7 camphor resistance protein CrcB compare
PS417_07140 -0.8 -3.7 peptidase M48 compare
PS417_06780 -0.8 -2.4 TetR family transcriptional regulator compare
PS417_17350 -0.8 -2.3 copper resistance protein CopD compare
PS417_27865 -0.8 -2.4 LysR family transcriptional regulator compare
PS417_23370 -0.8 -1.8 protoheme IX farnesyltransferase compare
PS417_02070 -0.8 -0.8 membrane protein compare
PS417_05850 -0.8 -3.7 LysR family transcriptional regulator compare
PS417_20055 -0.8 -1.8 cob(II)yrinic acid a,c-diamide reductase compare
PS417_22575 -0.8 -3.8 exonuclease I compare
PS417_09575 -0.8 -1.6 glutathione S-transferase compare
PS417_05510 -0.8 -3.6 alpha/beta hydrolase compare
PS417_12795 -0.8 -4.5 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_18710 -0.8 -4.0 hypothetical protein compare
PS417_22775 -0.8 -3.7 histidine kinase compare
PS417_06895 -0.8 -2.2 DNA-binding protein compare
PS417_20650 -0.8 -4.3 hypothetical protein compare
PS417_08205 -0.8 -1.6 acetyltransferase compare
PS417_16710 -0.8 -1.4 hydrolase compare
PS417_03100 -0.8 -0.8 pilus assembly protein compare
PS417_24605 -0.7 -2.5 thiamine-phosphate pyrophosphorylase compare
PS417_07115 -0.7 -4.4 L-aspartate oxidase compare
PS417_28225 -0.7 -1.0 hypothetical protein compare
PS417_04590 -0.7 -3.7 methyltransferase compare
PS417_25270 -0.7 -2.1 NrdR family transcriptional regulator compare
PS417_10575 -0.7 -1.9 DNA alkylation repair protein compare
PS417_09915 -0.7 -1.1 hypothetical protein compare
PS417_08410 -0.7 -1.1 hypothetical protein compare
PS417_06530 -0.7 -1.2 membrane protein compare
PS417_25030 -0.7 -2.6 hypothetical protein compare
PS417_07400 -0.7 -1.9 hypothetical protein compare
PS417_02720 -0.7 -0.7 TetR family transcriptional regulator compare
PS417_24225 -0.7 -1.1 hypothetical protein compare
PS417_03470 -0.7 -2.5 ATP synthase compare
PS417_05025 -0.7 -1.2 maleylacetoacetate isomerase compare
PS417_24500 -0.7 -1.9 DEAD/DEAH box helicase compare
PS417_12840 -0.7 -2.7 TetR family transcriptional regulator compare
PS417_23105 -0.7 -1.2 hypothetical protein compare
PS417_19285 -0.7 -1.2 ankyrin compare
PS417_24600 -0.7 -3.8 hydrogenase compare
PS417_18640 -0.7 -1.8 hydrolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant control experiments