Experiment set14IT043 for Pseudomonas simiae WCS417

Compare to:

Vogels_fungal_media; pH 5.5

200 most important genes:

  gene name fitness t score description  
PS417_23545 -7.4 -5.0 gamma-glutamyl kinase compare
PS417_24745 -6.3 -6.1 gamma-glutamyl phosphate reductase compare
PS417_23805 -5.1 -5.8 acetolactate synthase 3 regulatory subunit compare
PS417_27795 -5.0 -1.8 orotate phosphoribosyltransferase compare
PS417_02000 -4.6 -13.6 glutamate synthase compare
PS417_25720 -4.5 -8.0 anthranilate synthase component II compare
PS417_04415 -4.5 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23800 -4.4 -13.1 ketol-acid reductoisomerase compare
PS417_00185 -4.3 -5.1 tryptophan synthase subunit beta compare
PS417_18585 -4.3 -6.8 3-isopropylmalate dehydrogenase compare
PS417_01855 -4.3 -4.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_18595 -4.3 -4.0 3-isopropylmalate dehydratase compare
PS417_18600 -4.2 -4.3 isopropylmalate isomerase compare
PS417_23810 -4.2 -12.0 acetolactate synthase 3 catalytic subunit compare
PS417_01565 -4.2 -5.4 imidazole glycerol phosphate synthase compare
PS417_02005 -4.2 -13.0 glutamate synthase compare
PS417_01575 -4.1 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01580 -4.0 -1.8 imidazole glycerol phosphate synthase compare
PS417_01605 -3.9 -2.7 phosphoglycerate mutase compare
PS417_26730 -3.9 -2.0 pyrroline-5-carboxylate reductase compare
PS417_26850 -3.7 -1.3 twin-arginine translocation pathway signal protein compare
PS417_27040 -3.7 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_25725 -3.5 -15.6 anthranilate synthase component I compare
PS417_25715 -3.5 -6.1 anthranilate phosphoribosyltransferase compare
PS417_26745 -3.5 -7.4 methionine biosynthesis protein MetW compare
PS417_05595 -3.4 -6.8 ornithine carbamoyltransferase compare
PS417_26740 -3.3 -9.6 homoserine acetyltransferase compare
PS417_16465 -3.3 -9.4 sirohydrochlorin ferrochelatase compare
PS417_03310 -3.3 -7.8 carbonate dehydratase compare
PS417_02415 -3.2 -5.1 phosphoserine phosphatase compare
PS417_01850 -3.1 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18560 -3.0 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_12290 -3.0 -7.2 sulfite reductase compare
PS417_04420 -3.0 -9.1 histidinol dehydrogenase compare
PS417_18530 -2.9 -5.1 O-succinylhomoserine sulfhydrylase compare
PS417_21125 -2.9 -9.1 phosphoadenosine phosphosulfate reductase compare
PS417_01560 -2.9 -3.1 imidazoleglycerol-phosphate dehydratase compare
PS417_26890 -2.9 -6.4 dihydroxy-acid dehydratase compare
PS417_23995 -2.8 -1.4 preprotein translocase subunit SecG compare
PS417_20160 -2.8 -3.2 cysteine synthase compare
PS417_07170 -2.8 -5.5 hypothetical protein compare
PS417_28220 -2.7 -3.0 LysR family transcriptional regulator compare
PS417_12855 -2.7 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08125 -2.6 -0.9 prephenate dehydratase compare
PS417_26995 -2.6 -9.0 phosphoserine phosphatase compare
PS417_04650 -2.5 -1.2 D-alanine--D-alanine ligase compare
PS417_01570 -2.4 -2.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23110 -2.4 -5.7 2-isopropylmalate synthase compare
PS417_06375 -2.4 -1.5 deoxycytidine triphosphate deaminase compare
PS417_25710 -2.4 -1.5 indole-3-glycerol-phosphate synthase compare
PS417_23915 -2.4 -6.5 pantoate--beta-alanine ligase compare
PS417_27195 -2.3 -1.3 N-acetylglutamate synthase compare
PS417_17240 -2.3 -5.0 trigger factor compare
PS417_27835 -2.3 -7.6 endoribonuclease compare
PS417_02510 -2.3 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_24705 -2.2 -4.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_26985 -2.1 -8.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_13455 -2.1 -2.5 alkaline proteinase inhibitor compare
PS417_27435 -2.1 -7.1 polyphosphate kinase compare
PS417_00180 -2.1 -3.1 tryptophan synthase subunit alpha compare
PS417_10245 -2.0 -2.5 hypothetical protein compare
PS417_22445 -2.0 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_23950 -2.0 -3.7 polynucleotide phosphorylase/polyadenylase compare
PS417_03100 -2.0 -1.4 pilus assembly protein compare
PS417_04380 -2.0 -1.2 ABC transporter permease compare
PS417_08410 -1.9 -4.5 hypothetical protein compare
PS417_27800 -1.9 -2.2 exodeoxyribonuclease III compare
PS417_03260 -1.9 -1.7 5S ribosomal RNA compare
PS417_03925 -1.9 -6.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_23910 -1.8 -5.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_21480 -1.8 -2.2 23S rRNA pseudouridylate synthase compare
PS417_18690 -1.8 -3.9 aromatic amino acid aminotransferase compare
PS417_16720 -1.7 -1.6 membrane protein compare
PS417_20785 -1.7 -4.6 transcriptional regulator compare
PS417_22385 -1.6 -6.3 quinolinate synthase A compare
PS417_20985 -1.6 -1.9 porin compare
PS417_21705 -1.6 -4.6 arginine N-succinyltransferase compare
PS417_06145 -1.6 -1.4 hypothetical protein compare
PS417_04385 -1.6 -3.4 organic solvent ABC transporter substrate-binding protein compare
PS417_22690 -1.6 -4.6 phosphogluconate dehydratase compare
PS417_01115 -1.5 -1.4 serine acetyltransferase compare
PS417_17215 -1.5 -4.6 peptidylprolyl isomerase compare
PS417_18425 -1.5 -2.2 sporulation protein compare
PS417_06945 -1.5 -1.5 membrane protein compare
PS417_23770 -1.5 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_03815 -1.5 -2.6 DNA transporter compare
PS417_12565 -1.4 -2.1 2-dehydro-3-deoxygluconokinase compare
PS417_08200 -1.4 -3.3 hypothetical protein compare
PS417_27870 -1.4 -4.6 ATP-dependent DNA helicase RecG compare
PS417_00755 -1.4 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_06445 -1.4 -2.7 iron-siderophore ABC transporter permease compare
PS417_03705 -1.3 -3.7 2-alkenal reductase compare
PS417_28350 -1.3 -5.4 fatty acid methyltransferase compare
PS417_16490 -1.3 -1.6 cell division protein FtsK compare
PS417_24935 -1.3 -1.5 hypothetical protein compare
PS417_09420 -1.3 -1.6 LysR family transcriptional regulator compare
PS417_03935 -1.3 -2.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_06530 -1.3 -3.8 membrane protein compare
PS417_05830 -1.3 -3.3 hypothetical protein compare
PS417_22050 -1.3 -2.9 ribonuclease BN compare
PS417_08245 -1.3 -1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08185 -1.3 -3.2 glycosyl transferase compare
PS417_04275 -1.2 -8.4 hypothetical protein compare
PS417_27865 -1.2 -2.5 LysR family transcriptional regulator compare
PS417_08205 -1.2 -4.9 acetyltransferase compare
PS417_06245 -1.2 -1.9 zinc metallopeptidase RseP compare
PS417_08225 -1.2 -4.6 acetolactate synthase compare
PS417_11705 -1.2 -4.3 cyclic peptide transporter compare
PS417_15085 -1.2 -3.9 ATPase AAA compare
PS417_18545 -1.2 -3.3 cell division protein compare
PS417_04390 -1.2 -2.1 toluene tolerance protein compare
PS417_03560 -1.2 -1.2 GTP-binding protein compare
PS417_22620 -1.2 -3.0 pyruvate kinase compare
PS417_26695 -1.2 -0.9 uracil phosphoribosyltransferase compare
PS417_23820 -1.1 -3.4 hypothetical protein compare
PS417_22575 -1.1 -5.8 exonuclease I compare
PS417_24500 -1.1 -3.4 DEAD/DEAH box helicase compare
PS417_27305 -1.1 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_08190 -1.1 -7.5 membrane protein compare
PS417_07710 -1.1 -3.7 membrane protein compare
PS417_21625 -1.1 -1.1 DNA-binding protein compare
PS417_13255 -1.0 -1.3 ABC transporter compare
PS417_04305 -1.0 -1.4 aspartate ammonia-lyase compare
PS417_20125 -1.0 -2.3 phosphoribosylglycinamide formyltransferase compare
PS417_02950 -1.0 -2.1 tRNA-dihydrouridine synthase B compare
PS417_06540 -1.0 -0.9 membrane protein compare
PS417_12795 -1.0 -5.7 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_12520 -0.9 -2.7 hypothetical protein compare
PS417_07620 -0.9 -1.9 beta-hexosaminidase compare
PS417_09035 -0.9 -2.7 hypothetical protein compare
PS417_07140 -0.9 -1.8 peptidase M48 compare
PS417_04375 -0.9 -1.3 ABC transporter ATP-binding protein compare
PS417_22520 -0.9 -1.2 histidine kinase compare
PS417_15875 -0.9 -1.3 LuxR family transcriptional regulator compare
PS417_07115 -0.9 -5.5 L-aspartate oxidase compare
PS417_09575 -0.9 -2.3 glutathione S-transferase compare
PS417_07120 -0.9 -2.9 RNA polymerase sigma-H factor compare
PS417_27520 -0.9 -2.0 uroporphyrin-III methyltransferase compare
PS417_12325 -0.9 -1.6 precorrin-4 C11-methyltransferase compare
PS417_03495 -0.9 -1.9 type III secretory protein EscS compare
PS417_14985 -0.9 -1.4 Fe-S protein compare
PS417_13510 -0.9 -1.0 polyketide cyclase compare
PS417_25315 -0.9 -3.0 membrane protein compare
PS417_20980 -0.9 -3.5 uroporphyrin-III methyltransferase compare
PS417_15285 -0.9 -1.0 type VI secretion protein compare
PS417_14240 -0.9 -3.1 isochorismatase compare
PS417_08335 -0.9 -1.0 hypothetical protein compare
PS417_03475 -0.9 -1.1 type III secretion protein compare
PS417_26370 -0.9 -2.5 RNA helicase compare
PS417_23375 -0.9 -1.3 cytochrome C oxidase compare
PS417_23625 -0.9 -2.5 LysR family transcriptional regulator compare
PS417_02575 -0.9 -2.0 membrane protein compare
PS417_16475 -0.8 -2.0 camphor resistance protein CrcB compare
PS417_20520 -0.8 -1.8 3-phosphoglycerate kinase compare
PS417_14305 -0.8 -1.4 hydroxyproline-2-epimerase compare
PS417_15215 -0.8 -1.4 protein activator of alkane oxidation PraA compare
PS417_18235 -0.8 -2.3 nitrile hydratase compare
PS417_08945 -0.8 -4.8 heat shock protein 90 compare
PS417_05850 -0.8 -2.8 LysR family transcriptional regulator compare
PS417_00045 -0.8 -1.2 glycerol acyltransferase compare
PS417_10710 -0.8 -1.7 GNAT family acetyltransferase compare
PS417_15935 -0.8 -1.1 Rrf2 family transcriptional regulator compare
PS417_15890 -0.8 -1.3 RNA polymerase sigma factor compare
PS417_05510 -0.8 -2.1 alpha/beta hydrolase compare
PS417_15110 -0.8 -2.7 protein BatD compare
PS417_10675 -0.8 -0.8 TetR family transcriptional regulator compare
PS417_01630 -0.8 -1.4 hypothetical protein compare
PS417_17285 -0.8 -3.9 hypothetical protein compare
PS417_15095 -0.8 -1.8 hypothetical protein compare
PS417_15105 -0.8 -2.9 membrane protein compare
PS417_20545 -0.8 -2.9 porin compare
PS417_23025 -0.8 -2.5 murein transglycosylase compare
PS417_05505 -0.8 -2.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_20650 -0.8 -4.5 hypothetical protein compare
PS417_25225 -0.8 -0.9 MFS transporter compare
PS417_19425 -0.8 -0.7 allantoicase compare
PS417_00920 -0.8 -2.4 diguanylate cyclase compare
PS417_19480 -0.8 -3.3 aminopeptidase compare
PS417_05455 -0.8 -2.9 XRE family transcriptional regulator compare
PS417_16400 -0.8 -1.3 NAD(P)H-quinone oxidoreductase compare
PS417_05325 -0.8 -1.5 fimbrial protein compare
PS417_19350 -0.8 -2.5 GTP cyclohydrolase compare
PS417_00925 -0.7 -1.5 hypothetical protein compare
PS417_09470 -0.7 -0.7 hypothetical protein compare
PS417_18710 -0.7 -3.5 hypothetical protein compare
PS417_26715 -0.7 -1.9 peptidase P60 compare
PS417_02405 -0.7 -2.6 hypothetical protein compare
PS417_13995 -0.7 -3.3 NADP-dependent oxidoreductase compare
PS417_07595 -0.7 -3.0 PasA protein compare
PS417_19610 -0.7 -1.8 molybdenum cofactor sulfurase compare
PS417_03080 -0.7 -1.8 hypothetical protein compare
PS417_24605 -0.7 -2.4 thiamine-phosphate pyrophosphorylase compare
PS417_09325 -0.7 -2.4 peptidase S41 compare
PS417_02225 -0.7 -1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_25390 -0.7 -2.3 MFS transporter compare
PS417_01270 -0.7 -1.2 iron ABC transporter substrate-binding protein compare
PS417_14655 -0.7 -0.9 lysine transporter LysE compare
PS417_03165 -0.7 -1.8 hypothetical protein compare
PS417_08230 -0.7 -1.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_09505 -0.7 -1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant control experiments