Experiment set14IT043 for Pseudomonas simiae WCS417

Compare to:

Vogels_fungal_media; pH 5.5

200 most detrimental genes:

  gene name fitness t score description  
PS417_19825 +2.2 13.0 ATPase AAA compare
PS417_21565 +1.6 7.9 flagellar basal body rod protein FlgC compare
PS417_22990 +1.5 3.8 iron dicitrate transport regulator FecR compare
PS417_19695 +1.5 7.1 flagellar biosynthesis sigma factor compare
PS417_07865 +1.4 2.3 hypothetical protein compare
PS417_21555 +1.4 9.0 flagellar hook protein FlgE compare
PS417_19725 +1.3 8.1 flagellar biosynthesis protein FlhB compare
PS417_21570 +1.3 9.8 flagellar basal body rod protein FlgB compare
PS417_21585 +1.3 9.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_07870 +1.3 3.3 hypothetical protein compare
PS417_24370 +1.3 1.6 (2Fe-2S)-binding protein compare
PS417_19785 +1.3 2.3 flagellar biogenesis protein compare
PS417_19880 +1.2 7.3 flagellar basal body L-ring protein compare
PS417_19795 +1.2 6.8 flagellar assembly protein FliH compare
PS417_28450 +1.2 3.7 XRE family transcriptional regulator compare
PS417_24030 +1.2 1.8 MFS transporter compare
PS417_19740 +1.1 6.1 flagellar biosynthesis protein flip compare
PS417_27875 +1.1 6.1 histidine kinase compare
PS417_19865 +1.1 8.1 flagellar hook protein FlgK compare
PS417_19765 +1.1 6.1 flagellar hook-length control protein compare
PS417_11825 +1.0 2.6 transcriptional regulator compare
PS417_06500 +1.0 2.2 hypothetical protein compare
PS417_19730 +1.0 4.0 flagellar biosynthesis protein FliR compare
PS417_07890 +1.0 2.2 hypothetical protein compare
PS417_11925 +1.0 2.2 hypothetical protein compare
PS417_02805 +1.0 2.4 urease subunit gamma compare
PS417_19860 +1.0 8.5 flagellar hook protein FlgL compare
PS417_19745 +1.0 7.1 flagellar assembly protein FliO compare
PS417_17290 +1.0 6.8 RND transporter compare
PS417_19885 +1.0 4.1 flagellar basal body rod protein FlgG compare
PS417_19800 +1.0 2.6 flagellar motor switch protein FliG compare
PS417_17295 +1.0 5.6 RND transporter MFP subunit compare
PS417_00845 +1.0 1.4 transcriptional regulator compare
PS417_10810 +0.9 1.6 hypothetical protein compare
PS417_11820 +0.9 3.1 histidine kinase compare
PS417_19095 +0.9 1.4 hypothetical protein compare
PS417_17300 +0.9 6.4 RND transporter compare
PS417_06095 +0.9 2.4 energy transducer TonB compare
PS417_11900 +0.9 6.5 conjugal transfer protein TraR compare
PS417_11480 +0.9 3.2 hypothetical protein compare
PS417_04690 +0.9 3.5 transcriptional regulator compare
PS417_16000 +0.9 2.1 chemotaxis protein CheY compare
PS417_19835 +0.9 1.1 flagellar biosynthesis protein FliS compare
PS417_10220 +0.9 4.3 hypothetical protein compare
PS417_16815 +0.9 2.8 acyl-CoA dehydrogenase compare
PS417_22375 +0.9 1.0 cold-shock protein compare
PS417_07875 +0.9 1.1 hypothetical protein compare
PS417_12400 +0.9 2.8 oxidoreductase compare
PS417_03785 +0.9 2.0 pilus assembly protein PilV compare
PS417_22025 +0.8 1.0 LysR family transcriptional regulator compare
PS417_09865 +0.8 1.3 hypothetical protein compare
PS417_21560 +0.8 2.5 flagellar basal body rod modification protein FlgD compare
PS417_19870 +0.8 2.2 flagellar rod assembly protein FlgJ compare
PS417_19710 +0.8 5.0 flagellar biosynthesis protein FlhA compare
PS417_18025 +0.8 2.5 cytochrome C compare
PS417_02820 +0.8 1.7 urea ABC transporter ATP-binding protein compare
PS417_26530 +0.8 0.9 hypothetical protein compare
PS417_12870 +0.8 2.2 enoyl-CoA hydratase compare
PS417_07840 +0.8 2.3 hypothetical protein compare
PS417_05025 +0.8 2.0 maleylacetoacetate isomerase compare
PS417_27715 +0.8 1.3 Fe-S oxidoreductase compare
PS417_11770 +0.8 2.2 pyruvate dehydrogenase compare
PS417_19830 +0.8 2.0 flagellar assembly protein FliT compare
PS417_18265 +0.8 1.7 AsnC family transcriptional regulator compare
PS417_17945 +0.8 0.9 hypothetical protein compare
PS417_03385 +0.8 1.1 flavin reductase compare
PS417_24615 +0.8 1.0 hypothetical protein compare
PS417_19735 +0.8 3.0 flagellar biosynthesis protein FliQ compare
PS417_09740 +0.7 3.0 RNA polymerase subunit sigma-24 compare
PS417_27135 +0.7 0.8 glutamine synthetase compare
PS417_02955 +0.7 3.3 hypothetical protein compare
PS417_10015 +0.7 1.2 hypothetical protein compare
PS417_23150 +0.7 2.2 Cro/Cl family transcriptional regulator compare
PS417_14165 +0.7 2.2 ArsR family transcriptional regulator compare
PS417_06835 +0.7 1.4 phospholipase compare
PS417_12525 +0.7 2.4 hypothetical protein compare
PS417_01440 +0.7 3.1 hypothetical protein compare
PS417_13735 +0.7 1.0 hypothetical protein compare
PS417_27380 +0.7 2.3 GntR family transcriptional regulator compare
PS417_26260 +0.7 1.1 hypothetical protein compare
PS417_24575 +0.7 1.4 hypothetical protein compare
PS417_13855 +0.7 1.1 acetyl-CoA acetyltransferase compare
PS417_08365 +0.7 1.0 hypothetical protein compare
PS417_16715 +0.7 1.4 DoxX family protein compare
PS417_09460 +0.7 2.0 alkanesulfonate monooxygenase compare
PS417_17705 +0.7 2.5 LacI family transcriptional regulator compare
PS417_12990 +0.7 2.8 nucleoside hydrolase compare
PS417_18055 +0.7 0.7 general secretion pathway protein GspK compare
PS417_16845 +0.7 2.0 monovalent cation/H+ antiporter subunit E compare
PS417_06395 +0.7 1.5 amino acid transporter compare
PS417_19500 +0.7 2.0 antibiotic synthesis protein MbtH compare
PS417_27475 +0.7 1.8 membrane protein compare
PS417_20725 +0.7 1.7 cbb3-type cytochrome c oxidase subunit II compare
PS417_20170 +0.7 2.8 hypothetical protein compare
PS417_25175 +0.7 1.5 hypothetical protein compare
PS417_03490 +0.7 2.8 type III secretion system protein SsaR compare
PS417_04705 +0.7 1.1 hypothetical protein compare
PS417_00835 +0.7 2.4 hypothetical protein compare
PS417_27555 +0.7 1.2 DNA-binding protein compare
PS417_02465 +0.7 1.8 carbohydrate kinase compare
PS417_25045 +0.7 4.2 hypothetical protein compare
PS417_19720 +0.6 0.8 DNA-binding protein compare
PS417_13740 +0.6 3.7 hypothetical protein compare
PS417_13075 +0.6 1.2 hypothetical protein compare
PS417_17855 +0.6 2.5 major facilitator transporter compare
PS417_09210 +0.6 1.0 TetR family transcriptional regulator compare
PS417_22875 +0.6 1.4 hypothetical protein compare
PS417_14925 +0.6 1.5 2-methylcitrate dehydratase compare
PS417_08160 +0.6 1.7 hypothetical protein compare
PS417_25165 +0.6 2.6 chitin-binding protein compare
PS417_19840 +0.6 4.4 flagellar cap protein FliD compare
PS417_06845 +0.6 1.4 lipoprotein compare
PS417_25130 +0.6 4.1 hypothetical protein compare
PS417_22800 +0.6 1.9 heme iron utilization protein compare
PS417_20140 +0.6 1.5 nucleoprotein/polynucleotide-associated enzyme compare
PS417_01795 +0.6 3.8 glucosyltransferase MdoH compare
PS417_15480 +0.6 1.6 ABC transporter substrate-binding protein compare
PS417_24275 +0.6 5.0 diguanylate phosphodiesterase compare
PS417_00825 +0.6 1.8 recombinase RecF compare
PS417_22300 +0.6 1.2 LTXXQ domain protein compare
PS417_04905 +0.6 1.7 amino acid ABC transporter permease compare
PS417_24175 +0.6 4.4 hypothetical protein compare
PS417_19850 +0.6 3.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_14710 +0.6 1.2 isochorismatase compare
PS417_05635 +0.6 3.7 membrane protein compare
PS417_06350 +0.6 3.1 stationary phase survival protein SurE compare
PS417_11455 +0.6 2.1 hypothetical protein compare
PS417_23005 +0.6 2.1 XRE family transcriptional regulator compare
PS417_20310 +0.6 2.0 hypothetical protein compare
PS417_26400 +0.6 1.3 metal-dependent hydrolase compare
PS417_01395 +0.6 4.7 biofilm formation protein PelB compare
PS417_01285 +0.6 1.2 haloacid dehalogenase compare
PS417_13090 +0.6 1.5 dienelactone hydrolase compare
PS417_01955 +0.6 3.0 peptidase compare
PS417_25170 +0.6 3.3 FAD-binding protein compare
PS417_03725 +0.6 2.4 acyltransferase compare
PS417_05970 +0.6 3.0 chemotaxis protein CheR compare
PS417_04960 +0.6 1.2 hypothetical protein compare
PS417_04485 +0.6 2.6 hypothetical protein compare
PS417_19790 +0.6 1.4 ATP synthase compare
PS417_07700 +0.6 1.7 chromosome partitioning protein ParA compare
PS417_22705 +0.6 1.8 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_04920 +0.6 1.7 GntR family transcriptional regulator compare
PS417_20420 +0.6 2.7 reverse transcriptase compare
PS417_13495 +0.6 2.0 nuclease compare
PS417_16555 +0.6 1.3 cupin compare
PS417_17445 +0.5 1.8 sulfur oxidation protein SoxZ compare
PS417_20610 +0.5 0.8 hypothetical protein compare
PS417_26645 +0.5 1.1 chemotaxis protein compare
PS417_15440 +0.5 2.0 iron ABC transporter substrate-binding protein compare
PS417_09335 +0.5 1.4 HAD family hydrolase compare
PS417_15305 +0.5 1.3 type VI secretion protein compare
PS417_06680 +0.5 2.4 nuclease PIN compare
PS417_27505 +0.5 2.0 transcriptional regulator compare
PS417_21180 +0.5 2.4 short-chain dehydrogenase compare
PS417_00785 +0.5 2.8 hypothetical protein compare
PS417_24170 +0.5 5.0 cell division protein FtsK compare
PS417_07195 +0.5 1.7 hypothetical protein compare
PS417_18400 +0.5 2.3 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_15910 +0.5 2.1 lysine transporter LysE compare
PS417_25895 +0.5 1.4 glyoxalase compare
PS417_21695 +0.5 1.2 succinylglutamate-semialdehyde dehydrogenase compare
PS417_16665 +0.5 1.3 hypothetical protein compare
PS417_05410 +0.5 1.9 membrane protein compare
PS417_11965 +0.5 1.8 GCN5 family acetyltransferase compare
PS417_24620 +0.5 1.2 hypothetical protein compare
PS417_01945 +0.5 1.8 nuclease compare
PS417_25275 +0.5 1.6 hypothetical protein compare
PS417_06685 +0.5 0.6 beta-ketoadipyl CoA thiolase compare
PS417_06370 +0.5 1.1 cold-shock protein compare
PS417_27705 +0.5 0.9 amino acid dehydrogenase compare
PS417_18150 +0.5 2.4 chemotaxis protein CheY compare
PS417_16750 +0.5 1.5 ABC transporter ATP-binding protein compare
PS417_05535 +0.5 0.8 Fis family transcriptional regulator compare
PS417_13580 +0.5 1.8 AraC family transcriptional regulator compare
PS417_17630 +0.5 1.7 RNA polymerase sigma factor compare
PS417_14600 +0.5 1.4 bleomycin resistance protein compare
PS417_13755 +0.5 1.1 oxidoreductase compare
PS417_21360 +0.5 0.8 termination factor Rho compare
PS417_09790 +0.5 2.4 hypothetical protein compare
PS417_06140 +0.5 2.0 cold-shock protein compare
PS417_09885 +0.5 2.7 hypothetical protein compare
PS417_06600 +0.5 0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_02025 +0.5 2.3 hypothetical protein compare
PS417_04950 +0.5 2.4 hypothetical protein compare
PS417_01420 +0.5 3.6 histidine kinase compare
PS417_27065 +0.5 2.3 hypothetical protein compare
PS417_22945 +0.5 1.2 phosphoribosylglycinamide formyltransferase compare
PS417_08045 +0.5 1.5 uracil permease compare
PS417_11280 +0.5 1.9 HxcX atypical pseudopilin compare
PS417_16945 +0.5 1.2 LuxR family transcriptional regulator compare
PS417_26470 +0.5 0.6 cytochrome C compare
PS417_01800 +0.5 1.9 amino acid ABC transporter substrate-binding protein compare
PS417_23900 +0.5 2.5 poly(A) polymerase compare
PS417_18355 +0.5 1.7 DNA-binding protein compare
PS417_02340 +0.5 1.8 LysR family transcriptional regulator compare
PS417_17780 +0.5 0.9 Ais protein compare
PS417_14080 +0.5 1.9 hypothetical protein compare
PS417_26175 +0.5 0.6 sarcosine oxidase subunit gamma compare
PS417_00930 +0.5 2.3 ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant control experiments