Experiment set14IT040 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_23545 -5.9 -5.7 gamma-glutamyl kinase compare
PS417_24745 -5.1 -5.1 gamma-glutamyl phosphate reductase compare
PS417_26730 -3.9 -1.8 pyrroline-5-carboxylate reductase compare
PS417_18310 -3.8 -2.0 hypothetical protein compare
PS417_03560 -3.6 -2.3 GTP-binding protein compare
PS417_27795 -3.5 -1.6 orotate phosphoribosyltransferase compare
PS417_08125 -2.7 -0.9 prephenate dehydratase compare
PS417_22450 -2.7 -2.3 ATP-dependent DNA helicase RuvA compare
PS417_23770 -2.4 -3.0 exodeoxyribonuclease V subunit alpha compare
PS417_22210 -2.4 -3.3 AraC family transcriptional regulator compare
PS417_27800 -2.1 -2.5 exodeoxyribonuclease III compare
PS417_21480 -2.1 -1.8 23S rRNA pseudouridylate synthase compare
PS417_26605 -1.9 -1.5 malonate decarboxylase subunit beta compare
PS417_07170 -1.9 -4.5 hypothetical protein compare
PS417_21430 -1.9 -1.8 3-oxoacyl-ACP synthase compare
PS417_27195 -1.8 -1.5 N-acetylglutamate synthase compare
PS417_26990 -1.8 -1.1 RNA pyrophosphohydrolase compare
PS417_07140 -1.8 -3.1 peptidase M48 compare
PS417_20985 -1.7 -1.9 porin compare
PS417_06375 -1.7 -1.2 deoxycytidine triphosphate deaminase compare
PS417_01605 -1.7 -1.4 phosphoglycerate mutase compare
PS417_08130 -1.6 -2.4 aspartate aminotransferase compare
PS417_23025 -1.6 -5.8 murein transglycosylase compare
PS417_08685 -1.6 -2.3 flagellar hook-length control protein FliK compare
PS417_20785 -1.6 -4.4 transcriptional regulator compare
PS417_17240 -1.6 -4.3 trigger factor compare
PS417_18055 -1.6 -1.5 general secretion pathway protein GspK compare
PS417_04275 -1.5 -10.2 hypothetical protein compare
PS417_08410 -1.5 -2.9 hypothetical protein compare
PS417_07120 -1.5 -6.8 RNA polymerase sigma-H factor compare
PS417_20160 -1.5 -4.0 cysteine synthase compare
PS417_27870 -1.5 -3.6 ATP-dependent DNA helicase RecG compare
PS417_27640 -1.4 -1.5 TetR family transcriptional regulator compare
PS417_02950 -1.4 -3.2 tRNA-dihydrouridine synthase B compare
PS417_09420 -1.4 -1.9 LysR family transcriptional regulator compare
PS417_13800 -1.4 -4.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_18545 -1.4 -3.3 cell division protein compare
PS417_22050 -1.4 -4.2 ribonuclease BN compare
PS417_04390 -1.4 -3.3 toluene tolerance protein compare
PS417_15135 -1.4 -1.7 hypothetical protein compare
PS417_13455 -1.4 -2.6 alkaline proteinase inhibitor compare
PS417_19065 -1.3 -1.2 monooxygenase compare
PS417_23105 -1.3 -1.9 hypothetical protein compare
PS417_03260 -1.3 -0.5 5S ribosomal RNA compare
PS417_27215 -1.3 -3.1 hypothetical protein compare
PS417_24935 -1.3 -1.4 hypothetical protein compare
PS417_21625 -1.3 -1.2 DNA-binding protein compare
PS417_08220 -1.2 -0.9 epimerase compare
PS417_07950 -1.2 -2.8 MFS transporter compare
PS417_27245 -1.2 -2.6 aminotransferase DegT compare
PS417_05160 -1.2 -0.9 DNA polymerase III subunit chi compare
PS417_19425 -1.2 -1.0 allantoicase compare
PS417_23380 -1.2 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_06245 -1.2 -1.8 zinc metallopeptidase RseP compare
PS417_28230 -1.1 -2.6 transcriptional regulator compare
PS417_20635 -1.1 -1.1 ABC transporter ATP-binding protein compare
PS417_28225 -1.1 -1.3 hypothetical protein compare
PS417_08185 -1.1 -3.7 glycosyl transferase compare
PS417_21210 -1.1 -2.4 amidotransferase compare
PS417_26900 -1.1 -1.5 L-cystine transporter tcyP compare
PS417_04650 -1.1 -0.8 D-alanine--D-alanine ligase compare
PS417_04375 -1.1 -1.5 ABC transporter ATP-binding protein compare
PS417_17215 -1.1 -2.1 peptidylprolyl isomerase compare
PS417_26985 -1.1 -5.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_12855 -1.0 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02805 -1.0 -1.6 urease subunit gamma compare
PS417_09600 -1.0 -2.7 glycosyl transferase family 1 compare
PS417_28350 -1.0 -3.6 fatty acid methyltransferase compare
PS417_04500 -1.0 -1.2 hypothetical protein compare
PS417_08230 -1.0 -1.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01645 -1.0 -2.6 cupin compare
PS417_22565 -1.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_22445 -1.0 -2.4 ATP-dependent DNA helicase RuvB compare
PS417_02915 -1.0 -2.0 precorrin-3B C17-methyltransferase compare
PS417_18070 -1.0 -1.0 general secretion pathway protein GspH compare
PS417_02280 -1.0 -1.1 GlcNAc-PI de-N-acetylase compare
PS417_08200 -1.0 -2.7 hypothetical protein compare
PS417_19955 -1.0 -1.7 hypothetical protein compare
PS417_09580 -1.0 -2.7 tyrosyl-trna synthetase compare
PS417_23950 -1.0 -1.4 polynucleotide phosphorylase/polyadenylase compare
PS417_09590 -1.0 -3.5 membrane protein compare
PS417_05510 -1.0 -2.9 alpha/beta hydrolase compare
PS417_16490 -0.9 -1.5 cell division protein FtsK compare
PS417_13175 -0.9 -1.4 iron transporter compare
PS417_11705 -0.9 -4.5 cyclic peptide transporter compare
PS417_06530 -0.9 -2.1 membrane protein compare
PS417_13795 -0.9 -4.0 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_15110 -0.9 -2.9 protein BatD compare
PS417_02045 -0.9 -1.7 3-oxoacyl-ACP synthase compare
PS417_02485 -0.9 -2.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08190 -0.9 -6.6 membrane protein compare
PS417_23615 -0.9 -1.9 sulfate transporter compare
PS417_26175 -0.9 -0.8 sarcosine oxidase subunit gamma compare
PS417_07710 -0.9 -3.6 membrane protein compare
PS417_05830 -0.9 -3.2 hypothetical protein compare
PS417_11810 -0.9 -1.5 oxidoreductase compare
PS417_25390 -0.9 -2.7 MFS transporter compare
PS417_09470 -0.9 -0.9 hypothetical protein compare
PS417_16370 -0.9 -4.2 chemotaxis protein CheY compare
PS417_20125 -0.9 -2.4 phosphoribosylglycinamide formyltransferase compare
PS417_15400 -0.9 -1.2 hypothetical protein compare
PS417_20520 -0.9 -2.8 3-phosphoglycerate kinase compare
PS417_21125 -0.9 -2.4 phosphoadenosine phosphosulfate reductase compare
PS417_22775 -0.8 -4.6 histidine kinase compare
PS417_02255 -0.8 -1.8 lipopolysaccharide kinase compare
PS417_10425 -0.8 -1.4 hypothetical protein compare
PS417_02415 -0.8 -1.7 phosphoserine phosphatase compare
PS417_07615 -0.8 -2.4 TetR family transcriptional regulator compare
PS417_27865 -0.8 -1.4 LysR family transcriptional regulator compare
PS417_20030 -0.8 -1.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_16475 -0.8 -1.3 camphor resistance protein CrcB compare
PS417_18020 -0.8 -1.6 hypothetical protein compare
PS417_08135 -0.8 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08195 -0.8 -4.1 hypothetical protein compare
PS417_00355 -0.8 -1.3 metal ABC transporter permease compare
PS417_22575 -0.8 -4.1 exonuclease I compare
PS417_20650 -0.8 -4.4 hypothetical protein compare
PS417_08245 -0.8 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_03935 -0.8 -1.9 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_27605 -0.8 -3.0 hypothetical protein compare
PS417_19225 -0.8 -4.9 FAD-dependent cmnm(5)s(2)U34 oxidoreductase compare
PS417_05505 -0.8 -3.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_16510 -0.8 -2.4 Clp protease ClpX compare
PS417_16465 -0.8 -4.2 sirohydrochlorin ferrochelatase compare
PS417_03515 -0.8 -1.3 type III secretion protein compare
PS417_25985 -0.8 -1.3 dethiobiotin synthetase compare
PS417_04385 -0.8 -1.2 organic solvent ABC transporter substrate-binding protein compare
PS417_14940 -0.8 -1.2 LysR family transcriptional regulator compare
PS417_25280 -0.8 -2.3 methyltransferase compare
PS417_09595 -0.8 -3.2 membrane protein compare
PS417_12740 -0.8 -1.4 secretion protein HlyD compare
PS417_28390 -0.8 -1.9 CDP-alcohol phosphatidyltransferase compare
PS417_06140 -0.7 -1.5 cold-shock protein compare
PS417_09545 -0.7 -1.0 aldehyde-activating protein compare
PS417_19430 -0.7 -1.9 ureidoglycolate hydrolase compare
PS417_12795 -0.7 -4.3 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_14530 -0.7 -2.3 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_17125 -0.7 -1.4 transcriptional regulator compare
PS417_08540 -0.7 -1.5 RNA helicase compare
PS417_13205 -0.7 -1.0 isochorismate-pyruvate lyase compare
PS417_06365 -0.7 -3.4 RNA polymerase sigma factor compare
PS417_00385 -0.7 -0.6 Fur family transcriptional regulator compare
PS417_02695 -0.7 -1.1 protein hupE compare
PS417_08335 -0.7 -1.0 hypothetical protein compare
PS417_15935 -0.7 -1.0 Rrf2 family transcriptional regulator compare
PS417_01620 -0.7 -1.1 preprotein translocase subunit SecB compare
PS417_02270 -0.7 -2.1 carbamoyltransferase compare
PS417_27040 -0.7 -1.6 3-phosphoglycerate dehydrogenase compare
PS417_10720 -0.7 -2.2 chemotaxis protein CheY compare
PS417_02720 -0.7 -0.7 TetR family transcriptional regulator compare
PS417_10740 -0.7 -2.2 hypothetical protein compare
PS417_23670 -0.7 -2.0 Muconate cycloisomerase (EC 5.5.1.1) (from data) compare
PS417_27435 -0.7 -2.2 polyphosphate kinase compare
PS417_01580 -0.7 -1.0 imidazole glycerol phosphate synthase compare
PS417_22270 -0.7 -1.7 hypothetical protein compare
PS417_28020 -0.7 -1.9 chorismate--pyruvate lyase compare
PS417_05445 -0.7 -0.9 DNA mismatch repair protein MutT compare
PS417_16520 -0.7 -1.2 cold-shock protein compare
PS417_13255 -0.7 -1.2 ABC transporter compare
PS417_27105 -0.7 -2.1 spermidine/putrescine ABC transporter permease compare
PS417_01510 -0.7 -1.6 hypothetical protein compare
PS417_08205 -0.7 -1.8 acetyltransferase compare
PS417_05695 -0.7 -2.3 transcriptional regulator compare
PS417_21855 -0.7 -1.7 hypothetical protein compare
PS417_15100 -0.7 -1.0 BatB protein compare
PS417_15875 -0.7 -0.9 LuxR family transcriptional regulator compare
PS417_26455 -0.7 -2.0 hypothetical protein compare
PS417_18420 -0.6 -1.1 deoxyribonuclease compare
PS417_13805 -0.6 -3.4 4-amino-4-deoxy-L-arabinose transferase compare
PS417_02055 -0.6 -2.3 methyltransferase compare
PS417_13660 -0.6 -1.7 AsnC family transcriptional regulator compare
PS417_18710 -0.6 -2.2 hypothetical protein compare
PS417_22850 -0.6 -2.4 virulence factor family protein compare
PS417_11545 -0.6 -2.2 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_15095 -0.6 -1.8 hypothetical protein compare
PS417_06770 -0.6 -3.3 multidrug transporter compare
PS417_17405 -0.6 -1.5 AraC family transcriptional regulator compare
PS417_11390 -0.6 -0.6 LysR family transcriptional regulator compare
PS417_20980 -0.6 -2.8 uroporphyrin-III methyltransferase compare
PS417_26190 -0.6 -2.2 sarcosine oxidase subunit beta compare
PS417_02360 -0.6 -2.1 nitrate reductase compare
PS417_06370 -0.6 -0.9 cold-shock protein compare
PS417_12755 -0.6 -1.6 RND transporter compare
PS417_13820 -0.6 -2.0 UDP-glucose 6-dehydrogenase compare
PS417_26815 -0.6 -1.5 peptidase M16 compare
PS417_15105 -0.6 -2.0 membrane protein compare
PS417_10390 -0.6 -1.7 RNA polymerase subunit sigma24 compare
PS417_09020 -0.6 -1.8 esterase compare
PS417_15085 -0.6 -1.9 ATPase AAA compare
PS417_06200 -0.6 -2.6 protein-PII uridylyltransferase compare
PS417_18100 -0.6 -2.9 iron ABC transporter compare
PS417_26515 -0.6 -2.8 hypothetical protein compare
PS417_02690 -0.6 -2.3 N-acylglucosamine 2-epimerase compare
PS417_16810 -0.6 -1.7 acyl-CoA dehydrogenase compare
PS417_25710 -0.6 -0.9 indole-3-glycerol-phosphate synthase compare
PS417_18355 -0.6 -3.0 DNA-binding protein compare
PS417_02575 -0.6 -1.8 membrane protein compare
PS417_17685 -0.6 -1.7 allantoate amidohydrolase compare
PS417_14075 -0.6 -0.8 hypothetical protein compare
PS417_21915 -0.6 -1.5 LysR family transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms