Experiment set14IT039 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_24745 -5.8 -7.9 gamma-glutamyl phosphate reductase compare
PS417_27795 -5.2 -1.8 orotate phosphoribosyltransferase compare
PS417_06375 -4.9 -1.7 deoxycytidine triphosphate deaminase compare
PS417_01095 -3.5 -2.4 amino acid ABC transporter ATP-binding protein compare
PS417_20985 -3.1 -2.1 porin compare
PS417_26730 -3.0 -2.0 pyrroline-5-carboxylate reductase compare
PS417_23545 -2.8 -1.9 gamma-glutamyl kinase compare
PS417_08125 -2.7 -0.9 prephenate dehydratase compare
PS417_04650 -2.7 -1.2 D-alanine--D-alanine ligase compare
PS417_01605 -2.5 -2.1 phosphoglycerate mutase compare
PS417_27800 -2.4 -2.4 exodeoxyribonuclease III compare
PS417_08410 -2.4 -2.7 hypothetical protein compare
PS417_04385 -2.4 -4.5 organic solvent ABC transporter substrate-binding protein compare
PS417_13455 -2.3 -4.4 alkaline proteinase inhibitor compare
PS417_21655 -2.2 -1.8 aspartate kinase compare
PS417_03260 -2.1 -1.8 5S ribosomal RNA compare
PS417_06530 -2.0 -3.8 membrane protein compare
PS417_22450 -2.0 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_06245 -1.9 -2.0 zinc metallopeptidase RseP compare
PS417_23770 -1.8 -2.6 exodeoxyribonuclease V subunit alpha compare
PS417_23380 -1.8 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_22565 -1.8 -1.0 formyltetrahydrofolate deformylase compare
PS417_04275 -1.8 -11.7 hypothetical protein compare
PS417_07170 -1.8 -6.9 hypothetical protein compare
PS417_06145 -1.7 -1.4 hypothetical protein compare
PS417_20125 -1.7 -3.0 phosphoribosylglycinamide formyltransferase compare
PS417_20705 -1.6 -4.0 cbb3-type cytochrome c oxidase subunit II compare
PS417_27245 -1.6 -3.6 aminotransferase DegT compare
PS417_27870 -1.6 -2.9 ATP-dependent DNA helicase RecG compare
PS417_27315 -1.6 -1.4 hypothetical protein compare
PS417_08220 -1.6 -1.0 epimerase compare
PS417_23375 -1.5 -2.0 cytochrome C oxidase compare
PS417_04375 -1.4 -2.0 ABC transporter ATP-binding protein compare
PS417_20160 -1.4 -2.4 cysteine synthase compare
PS417_21125 -1.4 -5.9 phosphoadenosine phosphosulfate reductase compare
PS417_05830 -1.4 -3.4 hypothetical protein compare
PS417_06095 -1.4 -1.8 energy transducer TonB compare
PS417_01620 -1.4 -3.3 preprotein translocase subunit SecB compare
PS417_19425 -1.4 -1.1 allantoicase compare
PS417_02225 -1.3 -2.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_20785 -1.3 -2.9 transcriptional regulator compare
PS417_18545 -1.3 -3.7 cell division protein compare
PS417_27155 -1.3 -1.8 aliphatic sulfonates transport ATP-binding subunit compare
PS417_08135 -1.3 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_05510 -1.3 -5.4 alpha/beta hydrolase compare
PS417_06895 -1.3 -4.1 DNA-binding protein compare
PS417_26900 -1.3 -1.9 L-cystine transporter tcyP compare
PS417_07140 -1.3 -3.1 peptidase M48 compare
PS417_22520 -1.3 -1.9 histidine kinase compare
PS417_16510 -1.2 -4.4 Clp protease ClpX compare
PS417_12855 -1.2 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_28225 -1.2 -1.4 hypothetical protein compare
PS417_26985 -1.2 -6.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11440 -1.2 -2.1 hypothetical protein compare
PS417_02950 -1.2 -3.0 tRNA-dihydrouridine synthase B compare
PS417_17215 -1.2 -2.1 peptidylprolyl isomerase compare
PS417_26990 -1.2 -0.8 RNA pyrophosphohydrolase compare
PS417_02975 -1.2 -3.3 3-dehydroquinate dehydratase compare
PS417_22840 -1.2 -1.7 tRNA-Met compare
PS417_09235 -1.2 -1.0 molecular chaperone compare
PS417_24460 -1.2 -1.9 hypothetical protein compare
PS417_23950 -1.1 -2.2 polynucleotide phosphorylase/polyadenylase compare
PS417_00370 -1.1 -1.1 hypothetical protein compare
PS417_03465 -1.1 -0.9 type III secretion protein compare
PS417_23370 -1.1 -3.3 protoheme IX farnesyltransferase compare
PS417_04595 -1.1 -1.9 cell division protein MraZ compare
PS417_22575 -1.1 -6.8 exonuclease I compare
PS417_09605 -1.1 -2.1 glycosyl transferase compare
PS417_13790 -1.0 -2.9 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_15085 -1.0 -3.3 ATPase AAA compare
PS417_23315 -1.0 -1.3 transcriptional regulator compare
PS417_22775 -1.0 -5.3 histidine kinase compare
PS417_26240 -1.0 -1.8 N-methylproline demethylase compare
PS417_18310 -1.0 -1.2 hypothetical protein compare
PS417_03100 -1.0 -0.8 pilus assembly protein compare
PS417_11705 -1.0 -4.1 cyclic peptide transporter compare
PS417_04290 -1.0 -3.5 hypothetical protein compare
PS417_07710 -1.0 -3.5 membrane protein compare
PS417_06620 -1.0 -1.8 hypothetical protein compare
PS417_17305 -1.0 -1.3 hypothetical protein compare
PS417_07120 -1.0 -2.9 RNA polymerase sigma-H factor compare
PS417_02365 -1.0 -2.8 hypothetical protein compare
PS417_00510 -1.0 -0.8 membrane protein compare
PS417_02385 -1.0 -1.3 esterase compare
PS417_08510 -1.0 -2.3 LysR family transcriptional regulator compare
PS417_15875 -1.0 -1.7 LuxR family transcriptional regulator compare
PS417_18640 -0.9 -3.0 hydrolase compare
PS417_23025 -0.9 -3.6 murein transglycosylase compare
PS417_24785 -0.9 -1.4 nucleoside-diphosphate sugar epimerase compare
PS417_25710 -0.9 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_11670 -0.9 -2.2 multidrug transporter MATE compare
PS417_20030 -0.9 -1.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_05865 -0.9 -1.4 hypothetical protein compare
PS417_11475 -0.9 -2.0 membrane protein compare
PS417_08200 -0.9 -1.8 hypothetical protein compare
PS417_01950 -0.9 -3.0 malate dehydrogenase compare
PS417_27865 -0.9 -1.4 LysR family transcriptional regulator compare
PS417_28350 -0.9 -3.7 fatty acid methyltransferase compare
PS417_00085 -0.9 -1.6 16S rRNA methyltransferase compare
PS417_02270 -0.9 -2.4 carbamoyltransferase compare
PS417_16720 -0.9 -1.1 membrane protein compare
PS417_22795 -0.9 -1.4 exclusion suppressor FxsA compare
PS417_03455 -0.9 -1.6 type III secretion protein compare
PS417_13800 -0.9 -2.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_18055 -0.9 -0.8 general secretion pathway protein GspK compare
PS417_10665 -0.9 -1.8 hypothetical protein compare
PS417_00220 -0.9 -1.3 hypothetical protein compare
PS417_27040 -0.9 -0.8 3-phosphoglycerate dehydrogenase compare
PS417_08130 -0.9 -1.8 aspartate aminotransferase compare
PS417_02800 -0.9 -1.5 acetyltransferase compare
PS417_24500 -0.9 -2.8 DEAD/DEAH box helicase compare
PS417_06835 -0.9 -1.4 phospholipase compare
PS417_02280 -0.9 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_07615 -0.9 -3.0 TetR family transcriptional regulator compare
PS417_18710 -0.8 -3.2 hypothetical protein compare
PS417_08190 -0.8 -6.5 membrane protein compare
PS417_00175 -0.8 -0.9 CigR compare
PS417_19675 -0.8 -4.0 chemotaxis protein CheY compare
PS417_18360 -0.8 -1.5 hypothetical protein compare
PS417_27640 -0.8 -1.1 TetR family transcriptional regulator compare
PS417_00180 -0.8 -1.0 tryptophan synthase subunit alpha compare
PS417_27605 -0.8 -2.7 hypothetical protein compare
PS417_28030 -0.8 -2.3 hypothetical protein compare
PS417_28510 -0.8 -2.8 chromosome partitioning protein compare
PS417_15390 -0.8 -1.4 hypothetical protein compare
PS417_01285 -0.8 -1.4 haloacid dehalogenase compare
PS417_22445 -0.8 -1.4 ATP-dependent DNA helicase RuvB compare
PS417_28230 -0.8 -1.7 transcriptional regulator compare
PS417_24935 -0.8 -1.0 hypothetical protein compare
PS417_10910 -0.8 -2.2 FAD-dependent oxidoreductase compare
PS417_05905 -0.8 -0.8 hypothetical protein compare
PS417_17240 -0.8 -2.7 trigger factor compare
PS417_19955 -0.8 -1.6 hypothetical protein compare
PS417_09200 -0.8 -2.6 ABC transporter compare
PS417_06365 -0.8 -3.9 RNA polymerase sigma factor compare
PS417_10715 -0.8 -1.7 Cro/Cl family transcriptional regulator compare
PS417_14565 -0.8 -2.6 chemotaxis protein compare
PS417_09330 -0.8 -2.6 NAD(P)H-quinone oxidoreductase compare
PS417_25390 -0.8 -1.8 MFS transporter compare
PS417_05325 -0.8 -1.5 fimbrial protein compare
PS417_05045 -0.8 -2.1 acetamidase compare
PS417_15470 -0.8 -2.3 saccharopine dehydrogenase compare
PS417_06600 -0.8 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_08205 -0.8 -1.7 acetyltransferase compare
PS417_16400 -0.8 -1.1 NAD(P)H-quinone oxidoreductase compare
PS417_17980 -0.8 -1.3 ABC transporter permease compare
PS417_23105 -0.8 -1.1 hypothetical protein compare
PS417_02805 -0.8 -0.7 urease subunit gamma compare
PS417_09220 -0.7 -1.2 cupin compare
PS417_10095 -0.7 -1.1 hypothetical protein compare
PS417_15105 -0.7 -3.7 membrane protein compare
PS417_09575 -0.7 -1.6 glutathione S-transferase compare
PS417_11720 -0.7 -1.3 class V aminotransferase compare
PS417_24355 -0.7 -2.2 MFS transporter compare
PS417_15110 -0.7 -3.1 protein BatD compare
PS417_16045 -0.7 -1.3 acyl-CoA dehydrogenase compare
PS417_17050 -0.7 -1.8 transcriptional regulator compare
PS417_00185 -0.7 -1.9 tryptophan synthase subunit beta compare
PS417_03705 -0.7 -2.6 2-alkenal reductase compare
PS417_15540 -0.7 -0.9 NUDIX hydrolase compare
PS417_27675 -0.7 -1.9 xanthine phosphoribosyltransferase compare
PS417_20610 -0.7 -0.8 hypothetical protein compare
PS417_16370 -0.7 -3.6 chemotaxis protein CheY compare
PS417_18425 -0.7 -1.3 sporulation protein compare
PS417_02415 -0.7 -1.8 phosphoserine phosphatase compare
PS417_06150 -0.7 -1.5 SAM-dependent methlyltransferase compare
PS417_10985 -0.7 -0.7 NADH:flavin oxidoreductase compare
PS417_18760 -0.7 -2.0 hypothetical protein compare
PS417_11810 -0.7 -1.4 oxidoreductase compare
PS417_00355 -0.7 -1.5 metal ABC transporter permease compare
PS417_07950 -0.7 -1.5 MFS transporter compare
PS417_04305 -0.7 -1.0 aspartate ammonia-lyase compare
PS417_26370 -0.7 -2.8 RNA helicase compare
PS417_08945 -0.7 -3.9 heat shock protein 90 compare
PS417_10740 -0.7 -1.6 hypothetical protein compare
PS417_04185 -0.7 -0.9 hypothetical protein compare
PS417_07620 -0.7 -1.4 beta-hexosaminidase compare
PS417_02370 -0.7 -1.1 ADP-ribose pyrophosphatase compare
PS417_06335 -0.7 -1.4 S-formylglutathione hydrolase compare
PS417_08230 -0.7 -1.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_09245 -0.7 -0.9 recombinase RdgC compare
PS417_06165 -0.7 -2.1 thiamine biosynthesis protein ThiF compare
PS417_23810 -0.7 -4.4 acetolactate synthase 3 catalytic subunit compare
PS417_06200 -0.6 -2.6 protein-PII uridylyltransferase compare
PS417_09590 -0.6 -1.8 membrane protein compare
PS417_14655 -0.6 -0.8 lysine transporter LysE compare
PS417_20940 -0.6 -2.1 invasion protein IagB compare
PS417_27595 -0.6 -1.1 recombinase XerC compare
PS417_16490 -0.6 -0.9 cell division protein FtsK compare
PS417_05840 -0.6 -1.6 LuxR family transcriptional regulator compare
PS417_13895 -0.6 -2.0 chemotaxis protein CheB compare
PS417_17560 -0.6 -1.9 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_02475 -0.6 -1.8 N-acetylmuramoyl-L-alanine amidase compare
PS417_19285 -0.6 -0.8 ankyrin compare
PS417_15770 -0.6 -0.9 pyridoxine 5'-phosphate oxidase compare
PS417_11400 -0.6 -0.8 phosphoglycerate mutase compare
PS417_08540 -0.6 -1.4 RNA helicase compare
PS417_16555 -0.6 -0.8 cupin compare
PS417_08195 -0.6 -2.9 hypothetical protein compare
PS417_14760 -0.6 -1.5 membrane protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in supernatant experiments

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms