Experiment set14IT038 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_01605 -4.0 -2.3 phosphoglycerate mutase compare
PS417_26730 -4.0 -1.6 pyrroline-5-carboxylate reductase compare
PS417_24745 -3.6 -5.8 gamma-glutamyl phosphate reductase compare
PS417_08410 -3.4 -3.8 hypothetical protein compare
PS417_01915 -3.4 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04375 -2.8 -2.7 ABC transporter ATP-binding protein compare
PS417_27795 -2.8 -1.4 orotate phosphoribosyltransferase compare
PS417_00510 -2.7 -1.5 membrane protein compare
PS417_08245 -2.6 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22565 -2.6 -1.0 formyltetrahydrofolate deformylase compare
PS417_15285 -2.4 -1.5 type VI secretion protein compare
PS417_23545 -2.3 -1.2 gamma-glutamyl kinase compare
PS417_17240 -2.3 -3.6 trigger factor compare
PS417_08090 -2.2 -0.8 3-oxoacyl-ACP reductase compare
PS417_09085 -2.2 -1.5 hypothetical protein compare
PS417_07170 -2.2 -5.1 hypothetical protein compare
PS417_04380 -2.2 -1.0 ABC transporter permease compare
PS417_20985 -2.1 -1.9 porin compare
PS417_13800 -2.0 -2.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_08200 -1.9 -3.1 hypothetical protein compare
PS417_21125 -1.9 -4.2 phosphoadenosine phosphosulfate reductase compare
PS417_20160 -1.8 -5.5 cysteine synthase compare
PS417_18310 -1.8 -1.6 hypothetical protein compare
PS417_15105 -1.7 -5.7 membrane protein compare
PS417_23950 -1.7 -2.4 polynucleotide phosphorylase/polyadenylase compare
PS417_06945 -1.7 -1.4 membrane protein compare
PS417_08130 -1.7 -2.7 aspartate aminotransferase compare
PS417_17215 -1.6 -2.8 peptidylprolyl isomerase compare
PS417_03815 -1.6 -1.9 DNA transporter compare
PS417_05160 -1.6 -1.1 DNA polymerase III subunit chi compare
PS417_04305 -1.6 -1.5 aspartate ammonia-lyase compare
PS417_26900 -1.5 -1.6 L-cystine transporter tcyP compare
PS417_28225 -1.5 -1.3 hypothetical protein compare
PS417_06530 -1.5 -2.3 membrane protein compare
PS417_27245 -1.5 -2.6 aminotransferase DegT compare
PS417_17070 -1.5 -1.9 RNA polymerase subunit sigma-24 compare
PS417_05985 -1.5 -2.0 chemotaxis protein CheY compare
PS417_01620 -1.5 -2.4 preprotein translocase subunit SecB compare
PS417_04275 -1.4 -9.7 hypothetical protein compare
PS417_27005 -1.4 -1.0 membrane protein compare
PS417_04500 -1.4 -1.2 hypothetical protein compare
PS417_23995 -1.4 -0.9 preprotein translocase subunit SecG compare
PS417_05510 -1.4 -3.4 alpha/beta hydrolase compare
PS417_27075 -1.4 -2.8 thiol-disulfide isomerase compare
PS417_23770 -1.4 -1.4 exodeoxyribonuclease V subunit alpha compare
PS417_13455 -1.4 -3.1 alkaline proteinase inhibitor compare
PS417_24935 -1.4 -1.3 hypothetical protein compare
PS417_23380 -1.4 -2.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_23315 -1.4 -1.2 transcriptional regulator compare
PS417_21430 -1.3 -1.2 3-oxoacyl-ACP synthase compare
PS417_02975 -1.3 -3.1 3-dehydroquinate dehydratase compare
PS417_27195 -1.3 -1.1 N-acetylglutamate synthase compare
PS417_09210 -1.3 -1.3 TetR family transcriptional regulator compare
PS417_01645 -1.3 -2.7 cupin compare
PS417_03000 -1.3 -2.7 translation initiation factor Sui1 compare
PS417_16775 -1.3 -1.8 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_22450 -1.2 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_17470 -1.2 -3.0 LuxR family transcriptional regulator compare
PS417_07140 -1.2 -3.3 peptidase M48 compare
PS417_06245 -1.2 -1.4 zinc metallopeptidase RseP compare
PS417_10425 -1.2 -1.5 hypothetical protein compare
PS417_19675 -1.2 -4.1 chemotaxis protein CheY compare
PS417_26985 -1.2 -5.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_09150 -1.2 -1.3 energy transducer TonB compare
PS417_00925 -1.2 -1.7 hypothetical protein compare
PS417_05505 -1.2 -4.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_07940 -1.2 -2.2 hypothetical protein compare
PS417_18760 -1.2 -2.3 hypothetical protein compare
PS417_02280 -1.2 -1.2 GlcNAc-PI de-N-acetylase compare
PS417_07120 -1.2 -4.2 RNA polymerase sigma-H factor compare
PS417_02365 -1.1 -2.6 hypothetical protein compare
PS417_15100 -1.1 -1.9 BatB protein compare
PS417_08620 -1.1 -0.8 hypothetical protein compare
PS417_06395 -1.1 -1.7 amino acid transporter compare
PS417_28350 -1.1 -4.1 fatty acid methyltransferase compare
PS417_05830 -1.1 -2.7 hypothetical protein compare
PS417_18710 -1.1 -2.5 hypothetical protein compare
PS417_11810 -1.1 -1.3 oxidoreductase compare
PS417_06095 -1.1 -1.3 energy transducer TonB compare
PS417_10275 -1.1 -1.4 histidine kinase compare
PS417_06125 -1.1 -3.1 hypothetical protein compare
PS417_27800 -1.1 -1.7 exodeoxyribonuclease III compare
PS417_04385 -1.1 -2.1 organic solvent ABC transporter substrate-binding protein compare
PS417_09680 -1.1 -1.4 hydrolase compare
PS417_28515 -1.1 -2.1 16S rRNA methyltransferase compare
PS417_00355 -1.1 -1.8 metal ABC transporter permease compare
PS417_22575 -1.1 -4.7 exonuclease I compare
PS417_08190 -1.1 -6.5 membrane protein compare
PS417_18545 -1.0 -2.2 cell division protein compare
PS417_02995 -1.0 -2.3 NUDIX hydrolase compare
PS417_21630 -1.0 -1.6 magnesium transporter compare
PS417_00370 -1.0 -0.9 hypothetical protein compare
PS417_04800 -1.0 -2.1 alginate O-acetyltransferase compare
PS417_04595 -1.0 -1.5 cell division protein MraZ compare
PS417_04390 -1.0 -2.0 toluene tolerance protein compare
PS417_20785 -1.0 -2.6 transcriptional regulator compare
PS417_27815 -1.0 -1.0 hypothetical protein compare
PS417_08225 -1.0 -3.8 acetolactate synthase compare
PS417_17190 -1.0 -2.2 MarR family transcriptional regulator compare
PS417_06490 -0.9 -2.2 hypothetical protein compare
PS417_20650 -0.9 -4.1 hypothetical protein compare
PS417_20635 -0.9 -0.8 ABC transporter ATP-binding protein compare
PS417_22445 -0.9 -1.3 ATP-dependent DNA helicase RuvB compare
PS417_16490 -0.9 -0.8 cell division protein FtsK compare
PS417_12565 -0.9 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_06710 -0.9 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_15770 -0.9 -1.0 pyridoxine 5'-phosphate oxidase compare
PS417_23755 -0.9 -1.6 membrane protein compare
PS417_13175 -0.9 -0.9 iron transporter compare
PS417_17930 -0.9 -1.9 aldehyde dehydrogenase compare
PS417_01145 -0.9 -0.7 taurine transporter ATP-binding subunit compare
PS417_10305 -0.9 -1.1 hypothetical protein compare
PS417_03045 -0.9 -1.1 hypothetical protein compare
PS417_00175 -0.9 -0.8 CigR compare
PS417_08945 -0.9 -4.2 heat shock protein 90 compare
PS417_26175 -0.9 -0.6 sarcosine oxidase subunit gamma compare
PS417_06620 -0.9 -1.5 hypothetical protein compare
PS417_25315 -0.9 -2.3 membrane protein compare
PS417_18755 -0.9 -1.3 CrtK compare
PS417_11770 -0.9 -1.3 pyruvate dehydrogenase compare
PS417_18235 -0.9 -0.9 nitrile hydratase compare
PS417_26755 -0.9 -0.8 nucleoside-triphosphate diphosphatase compare
PS417_24560 -0.8 -1.6 ferrous iron transporter compare
PS417_27665 -0.8 -2.4 diguanylate cyclase compare
PS417_24650 -0.8 -1.3 membrane protein compare
PS417_06680 -0.8 -3.3 nuclease PIN compare
PS417_11845 -0.8 -2.1 RpiR family transcriptional regulator compare
PS417_19560 -0.8 -5.1 amino acid ABC transporter substrate-binding protein compare
PS417_13165 -0.8 -0.9 peroxidase compare
PS417_24265 -0.8 -2.0 ABC transporter ATP-binding protein compare
PS417_20950 -0.8 -2.0 hypothetical protein compare
PS417_17805 -0.8 -0.8 microcin B17 processing protein McbC compare
PS417_08185 -0.8 -2.5 glycosyl transferase compare
PS417_02770 -0.8 -1.6 membrane protein compare
PS417_05095 -0.8 -1.7 membrane protein compare
PS417_17120 -0.8 -2.4 protein kinase compare
PS417_20875 -0.8 -1.7 chromosome segregation protein SMC compare
PS417_22775 -0.8 -3.9 histidine kinase compare
PS417_08205 -0.8 -3.0 acetyltransferase compare
PS417_27605 -0.8 -2.1 hypothetical protein compare
PS417_26370 -0.8 -2.6 RNA helicase compare
PS417_22310 -0.8 -4.2 CAIB/BAIF family CoA transferase compare
PS417_16790 -0.8 -1.6 ABC transporter permease compare
PS417_11705 -0.8 -3.0 cyclic peptide transporter compare
PS417_16510 -0.8 -1.4 Clp protease ClpX compare
PS417_01200 -0.8 -2.3 phosphoesterase compare
PS417_08315 -0.8 -2.8 hypothetical protein compare
PS417_13895 -0.8 -1.9 chemotaxis protein CheB compare
PS417_05810 -0.8 -2.1 damage-inducible protein CinA compare
PS417_23375 -0.8 -1.0 cytochrome C oxidase compare
PS417_25380 -0.8 -1.4 hypothetical protein compare
PS417_12795 -0.8 -4.2 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_15125 -0.8 -1.5 glutathione S-transferase compare
PS417_14315 -0.8 -1.4 2,5-dioxovalerate dehydrogenase compare
PS417_21330 -0.8 -2.0 L-arabinose transporter ATP-binding protein compare
PS417_02045 -0.8 -1.4 3-oxoacyl-ACP synthase compare
PS417_24580 -0.8 -2.0 pseudouridine synthase compare
PS417_19275 -0.8 -0.8 hypothetical protein compare
PS417_06730 -0.8 -0.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_16100 -0.8 -2.1 antibiotic biosynthesis monooxygenase compare
PS417_27870 -0.8 -1.7 ATP-dependent DNA helicase RecG compare
PS417_08665 -0.7 -2.5 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_17925 -0.7 -1.4 acyl-CoA dehydrogenase compare
PS417_21380 -0.7 -1.6 GntR family transcriptional regulator compare
PS417_05500 -0.7 -1.3 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_22620 -0.7 -1.1 pyruvate kinase compare
PS417_26390 -0.7 -0.6 acyltransferase compare
PS417_06885 -0.7 -2.4 dihydrodipicolinate synthase compare
PS417_05905 -0.7 -1.1 hypothetical protein compare
PS417_26770 -0.7 -1.0 tRNA (guanine-N7)-methyltransferase compare
PS417_08195 -0.7 -3.1 hypothetical protein compare
PS417_26350 -0.7 -1.7 peptidase C69 compare
PS417_13075 -0.7 -0.8 hypothetical protein compare
PS417_20515 -0.7 -1.9 FMN-dependent NADH-azoreductase compare
PS417_20030 -0.7 -1.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_00480 -0.7 -2.3 hypothetical protein compare
PS417_07615 -0.7 -2.5 TetR family transcriptional regulator compare
PS417_10455 -0.7 -1.7 membrane protein compare
PS417_23820 -0.7 -1.9 hypothetical protein compare
PS417_24790 -0.7 -1.9 hypothetical protein compare
PS417_17645 -0.7 -1.0 RND transporter compare
PS417_27595 -0.7 -1.5 recombinase XerC compare
PS417_22050 -0.7 -1.9 ribonuclease BN compare
PS417_05815 -0.7 -1.7 recombinase RecA compare
PS417_25030 -0.7 -1.8 hypothetical protein compare
PS417_16520 -0.7 -1.0 cold-shock protein compare
PS417_10920 -0.7 -1.6 LysR family transcriptional regulator compare
PS417_27865 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_08135 -0.7 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12005 -0.7 -1.6 hypothetical protein compare
PS417_23370 -0.7 -1.9 protoheme IX farnesyltransferase compare
PS417_03560 -0.7 -0.7 GTP-binding protein compare
PS417_10690 -0.7 -2.3 acyl-CoA synthetase compare
PS417_11585 -0.7 -1.2 LuxR family transcriptional regulator compare
PS417_07420 -0.7 -1.5 restriction endonuclease compare
PS417_17455 -0.7 -2.3 cytochrome C compare
PS417_02720 -0.7 -0.6 TetR family transcriptional regulator compare
PS417_21000 -0.7 -1.3 CrfX protein compare
PS417_16180 -0.7 -1.4 MFS transporter compare
PS417_15540 -0.7 -0.8 NUDIX hydrolase compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms