Experiment set14IT037 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
PS417_01605 -4.2 -2.7 phosphoglycerate mutase compare
PS417_24745 -4.2 -5.2 gamma-glutamyl phosphate reductase compare
PS417_23545 -3.8 -4.2 gamma-glutamyl kinase compare
PS417_01915 -3.5 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_08125 -2.8 -0.9 prephenate dehydratase compare
PS417_27800 -2.4 -2.9 exodeoxyribonuclease III compare
PS417_26730 -2.4 -1.5 pyrroline-5-carboxylate reductase compare
PS417_07170 -2.3 -8.0 hypothetical protein compare
PS417_27795 -2.2 -1.5 orotate phosphoribosyltransferase compare
PS417_17215 -2.2 -4.6 peptidylprolyl isomerase compare
PS417_22565 -2.1 -1.1 formyltetrahydrofolate deformylase compare
PS417_02225 -2.0 -3.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_06375 -2.0 -1.4 deoxycytidine triphosphate deaminase compare
PS417_02280 -1.8 -1.8 GlcNAc-PI de-N-acetylase compare
PS417_04650 -1.7 -1.0 D-alanine--D-alanine ligase compare
PS417_00355 -1.7 -3.8 metal ABC transporter permease compare
PS417_27870 -1.7 -3.5 ATP-dependent DNA helicase RecG compare
PS417_22450 -1.7 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_23770 -1.7 -2.0 exodeoxyribonuclease V subunit alpha compare
PS417_22570 -1.7 -1.1 H-NS histone compare
PS417_17240 -1.6 -2.7 trigger factor compare
PS417_04305 -1.5 -1.7 aspartate ammonia-lyase compare
PS417_05985 -1.5 -3.5 chemotaxis protein CheY compare
PS417_08245 -1.5 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_20785 -1.5 -3.3 transcriptional regulator compare
PS417_06245 -1.5 -2.6 zinc metallopeptidase RseP compare
PS417_27865 -1.5 -1.8 LysR family transcriptional regulator compare
PS417_13075 -1.5 -1.5 hypothetical protein compare
PS417_04380 -1.4 -1.0 ABC transporter permease compare
PS417_21630 -1.4 -2.3 magnesium transporter compare
PS417_06540 -1.4 -1.7 membrane protein compare
PS417_24935 -1.4 -1.6 hypothetical protein compare
PS417_08130 -1.4 -1.6 aspartate aminotransferase compare
PS417_08135 -1.4 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13455 -1.4 -3.6 alkaline proteinase inhibitor compare
PS417_27290 -1.3 -1.7 hypothetical protein compare
PS417_21125 -1.3 -4.7 phosphoadenosine phosphosulfate reductase compare
PS417_26985 -1.3 -6.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05830 -1.3 -4.7 hypothetical protein compare
PS417_04375 -1.3 -2.3 ABC transporter ATP-binding protein compare
PS417_27245 -1.3 -3.6 aminotransferase DegT compare
PS417_08410 -1.3 -3.8 hypothetical protein compare
PS417_04275 -1.3 -8.8 hypothetical protein compare
PS417_19955 -1.3 -1.8 hypothetical protein compare
PS417_23950 -1.3 -3.0 polynucleotide phosphorylase/polyadenylase compare
PS417_01560 -1.2 -1.9 imidazoleglycerol-phosphate dehydratase compare
PS417_25390 -1.2 -2.6 MFS transporter compare
PS417_18545 -1.2 -2.9 cell division protein compare
PS417_22445 -1.2 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_28350 -1.2 -4.5 fatty acid methyltransferase compare
PS417_04385 -1.2 -3.3 organic solvent ABC transporter substrate-binding protein compare
PS417_01145 -1.2 -1.0 taurine transporter ATP-binding subunit compare
PS417_22620 -1.1 -2.3 pyruvate kinase compare
PS417_20125 -1.1 -2.5 phosphoribosylglycinamide formyltransferase compare
PS417_07560 -1.1 -1.2 universal stress protein UspA compare
PS417_07710 -1.1 -4.1 membrane protein compare
PS417_22520 -1.1 -1.3 histidine kinase compare
PS417_22575 -1.1 -6.0 exonuclease I compare
PS417_21625 -1.1 -1.1 DNA-binding protein compare
PS417_21850 -1.1 -1.4 LysR family transcriptional regulator compare
PS417_06745 -1.1 -2.1 polysaccharide deacetylase compare
PS417_20985 -1.1 -1.4 porin compare
PS417_02070 -1.0 -1.0 membrane protein compare
PS417_15110 -1.0 -5.0 protein BatD compare
PS417_05510 -1.0 -5.0 alpha/beta hydrolase compare
PS417_17610 -1.0 -1.7 AsnC family transcriptional regulator compare
PS417_06145 -1.0 -1.0 hypothetical protein compare
PS417_27040 -1.0 -0.9 3-phosphoglycerate dehydrogenase compare
PS417_08205 -1.0 -2.5 acetyltransferase compare
PS417_10275 -1.0 -1.3 histidine kinase compare
PS417_22210 -1.0 -1.7 AraC family transcriptional regulator compare
PS417_16720 -1.0 -1.2 membrane protein compare
PS417_20160 -1.0 -2.7 cysteine synthase compare
PS417_03300 -1.0 -2.4 alanine acetyltransferase compare
PS417_01645 -1.0 -2.2 cupin compare
PS417_05160 -1.0 -1.0 DNA polymerase III subunit chi compare
PS417_22050 -1.0 -3.3 ribonuclease BN compare
PS417_07140 -0.9 -2.3 peptidase M48 compare
PS417_07120 -0.9 -3.4 RNA polymerase sigma-H factor compare
PS417_23855 -0.9 -1.4 ABC transporter substrate-binding protein compare
PS417_20855 -0.9 -1.2 hypothetical protein compare
PS417_26815 -0.9 -2.1 peptidase M16 compare
PS417_27935 -0.9 -1.1 type VI secretion protein compare
PS417_22775 -0.9 -4.5 histidine kinase compare
PS417_23315 -0.9 -1.2 transcriptional regulator compare
PS417_23135 -0.9 -1.0 GTP-binding protein compare
PS417_08190 -0.9 -6.5 membrane protein compare
PS417_15105 -0.9 -4.4 membrane protein compare
PS417_16495 -0.9 -2.1 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_03260 -0.9 -1.3 5S ribosomal RNA compare
PS417_20030 -0.9 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_04595 -0.9 -1.7 cell division protein MraZ compare
PS417_18710 -0.9 -4.1 hypothetical protein compare
PS417_06365 -0.9 -4.7 RNA polymerase sigma factor compare
PS417_11175 -0.9 -1.8 AraC family transcriptional regulator compare
PS417_02560 -0.9 -1.3 23S rRNA methyltransferase compare
PS417_21430 -0.9 -1.5 3-oxoacyl-ACP synthase compare
PS417_05065 -0.9 -1.3 hypothetical protein compare
PS417_02160 -0.8 -1.0 hypothetical protein compare
PS417_15465 -0.8 -2.1 carboxynorspermidine decarboxylase compare
PS417_18070 -0.8 -0.9 general secretion pathway protein GspH compare
PS417_10455 -0.8 -2.1 membrane protein compare
PS417_06530 -0.8 -2.3 membrane protein compare
PS417_20025 -0.8 -1.3 alpha-ribazole phosphatase compare
PS417_23160 -0.8 -1.9 50S rRNA methyltransferase compare
PS417_17830 -0.8 -2.4 4-hydroxyphenylacetate isomerase compare
PS417_23375 -0.8 -1.4 cytochrome C oxidase compare
PS417_08185 -0.8 -2.9 glycosyl transferase compare
PS417_04180 -0.8 -1.2 GntR family transcriptional regulator compare
PS417_17105 -0.8 -2.0 spore coat protein compare
PS417_24500 -0.8 -2.4 DEAD/DEAH box helicase compare
PS417_16510 -0.8 -1.7 Clp protease ClpX compare
PS417_26755 -0.8 -1.3 nucleoside-triphosphate diphosphatase compare
PS417_18690 -0.8 -2.2 aromatic amino acid aminotransferase compare
PS417_24705 -0.8 -1.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_02415 -0.8 -2.3 phosphoserine phosphatase compare
PS417_12310 -0.8 -3.6 methionine synthase compare
PS417_14425 -0.8 -2.4 alkylhydroperoxidase compare
PS417_11055 -0.8 -1.8 AraC family transcriptional regulator compare
PS417_12390 -0.8 -1.8 hypothetical protein compare
PS417_23915 -0.8 -2.3 pantoate--beta-alanine ligase compare
PS417_27595 -0.8 -1.4 recombinase XerC compare
PS417_06685 -0.8 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_02475 -0.7 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_04800 -0.7 -1.1 alginate O-acetyltransferase compare
PS417_10720 -0.7 -2.2 chemotaxis protein CheY compare
PS417_02915 -0.7 -1.6 precorrin-3B C17-methyltransferase compare
PS417_08200 -0.7 -1.8 hypothetical protein compare
PS417_02950 -0.7 -1.8 tRNA-dihydrouridine synthase B compare
PS417_03310 -0.7 -3.8 carbonate dehydratase compare
PS417_20650 -0.7 -4.5 hypothetical protein compare
PS417_06025 -0.7 -2.4 alpha/beta hydrolase compare
PS417_23715 -0.7 -2.1 cupin compare
PS417_01270 -0.7 -1.1 iron ABC transporter substrate-binding protein compare
PS417_07465 -0.7 -2.2 LysR family transcriptional regulator compare
PS417_07635 -0.7 -4.7 transcription-repair coupling factor compare
PS417_18310 -0.7 -0.9 hypothetical protein compare
PS417_05505 -0.7 -3.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_22270 -0.7 -1.8 hypothetical protein compare
PS417_05500 -0.7 -2.0 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_21480 -0.7 -1.1 23S rRNA pseudouridylate synthase compare
PS417_03705 -0.7 -4.1 2-alkenal reductase compare
PS417_01920 -0.7 -0.8 ATP-dependent protease subunit HslV compare
PS417_06730 -0.7 -0.9 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_06165 -0.7 -1.1 thiamine biosynthesis protein ThiF compare
PS417_08945 -0.7 -3.6 heat shock protein 90 compare
PS417_15480 -0.7 -1.1 ABC transporter substrate-binding protein compare
PS417_21255 -0.7 -1.8 hypothetical protein compare
PS417_24585 -0.7 -4.6 AMP nucleosidase compare
PS417_08225 -0.7 -2.4 acetolactate synthase compare
PS417_05300 -0.7 -4.4 glucose dehydrogenase compare
PS417_20340 -0.7 -1.5 hypothetical protein compare
PS417_13895 -0.7 -2.4 chemotaxis protein CheB compare
PS417_13805 -0.7 -3.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_08230 -0.7 -1.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04390 -0.7 -2.3 toluene tolerance protein compare
PS417_23580 -0.7 -1.1 peptidylprolyl isomerase compare
PS417_07950 -0.7 -1.6 MFS transporter compare
PS417_16490 -0.7 -0.8 cell division protein FtsK compare
PS417_21065 -0.7 -1.2 3-methylitaconate isomerase compare
PS417_00185 -0.7 -2.0 tryptophan synthase subunit beta compare
PS417_04225 -0.7 -1.4 conjugal transfer protein TraR compare
PS417_12900 -0.7 -1.4 Fe-S protein compare
PS417_18755 -0.7 -0.8 CrtK compare
PS417_03915 -0.7 -1.4 tRNA-Thr compare
PS417_06490 -0.7 -2.7 hypothetical protein compare
PS417_09325 -0.7 -3.0 peptidase S41 compare
PS417_23370 -0.6 -2.8 protoheme IX farnesyltransferase compare
PS417_09300 -0.6 -1.7 peptidylprolyl isomerase compare
PS417_25225 -0.6 -1.4 MFS transporter compare
PS417_20930 -0.6 -3.4 50S rRNA methyltransferase compare
PS417_25710 -0.6 -0.6 indole-3-glycerol-phosphate synthase compare
PS417_24800 -0.6 -2.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_16855 -0.6 -1.3 cation:proton antiporter compare
PS417_22060 -0.6 -0.7 hypothetical protein compare
PS417_00405 -0.6 -4.1 DNA polymerase I compare
PS417_16520 -0.6 -1.1 cold-shock protein compare
PS417_13185 -0.6 -1.8 RND transporter compare
PS417_11705 -0.6 -3.8 cyclic peptide transporter compare
PS417_03525 -0.6 -1.1 hypothetical protein compare
PS417_01115 -0.6 -1.2 serine acetyltransferase compare
PS417_27445 -0.6 -3.0 membrane protein compare
PS417_24835 -0.6 -3.0 hypothetical protein compare
PS417_00920 -0.6 -2.5 diguanylate cyclase compare
PS417_08500 -0.6 -2.1 LysR family transcriptional regulator compare
PS417_15410 -0.6 -0.9 hypothetical protein compare
PS417_04475 -0.6 -2.0 hypothetical protein compare
PS417_06895 -0.6 -1.7 DNA-binding protein compare
PS417_12565 -0.6 -1.7 2-dehydro-3-deoxygluconokinase compare
PS417_14355 -0.6 -2.3 sugar dehydrogenase compare
PS417_22330 -0.6 -2.3 arginine deiminase compare
PS417_01575 -0.6 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_00085 -0.6 -1.2 16S rRNA methyltransferase compare
PS417_14515 -0.6 -0.9 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_25400 -0.6 -3.2 bacterioferritin compare
PS417_28440 -0.6 -2.1 hypothetical protein compare
PS417_02270 -0.6 -2.1 carbamoyltransferase compare
PS417_08045 -0.6 -1.2 uracil permease compare
PS417_26850 -0.6 -0.4 twin-arginine translocation pathway signal protein compare
PS417_12805 -0.6 -3.7 glycogen branching protein compare


Specific Phenotypes

For 3 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms