Experiment set14IT036 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

200 most important genes:

  gene name fitness t score description  
PS417_23545 -7.3 -4.9 gamma-glutamyl kinase compare
PS417_24745 -6.7 -4.6 gamma-glutamyl phosphate reductase compare
PS417_18585 -6.7 -4.6 3-isopropylmalate dehydrogenase compare
PS417_01855 -6.2 -3.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_27040 -5.1 -4.3 3-phosphoglycerate dehydrogenase compare
PS417_27795 -5.0 -1.7 orotate phosphoribosyltransferase compare
PS417_01575 -4.8 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_06375 -4.7 -1.7 deoxycytidine triphosphate deaminase compare
PS417_00185 -4.5 -4.4 tryptophan synthase subunit beta compare
PS417_23805 -4.4 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_18560 -4.1 -10.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23800 -4.1 -10.0 ketol-acid reductoisomerase compare
PS417_18530 -4.0 -5.7 O-succinylhomoserine sulfhydrylase compare
PS417_02005 -4.0 -12.1 glutamate synthase compare
PS417_00180 -4.0 -2.7 tryptophan synthase subunit alpha compare
PS417_01605 -3.8 -2.6 phosphoglycerate mutase compare
PS417_26730 -3.8 -1.9 pyrroline-5-carboxylate reductase compare
PS417_02415 -3.7 -6.4 phosphoserine phosphatase compare
PS417_18600 -3.7 -4.0 isopropylmalate isomerase compare
PS417_05595 -3.6 -9.6 ornithine carbamoyltransferase compare
PS417_01565 -3.6 -6.8 imidazole glycerol phosphate synthase compare
PS417_12290 -3.5 -7.3 sulfite reductase compare
PS417_27195 -3.5 -1.7 N-acetylglutamate synthase compare
PS417_04420 -3.5 -8.5 histidinol dehydrogenase compare
PS417_25725 -3.4 -12.4 anthranilate synthase component I compare
PS417_16465 -3.4 -7.1 sirohydrochlorin ferrochelatase compare
PS417_01560 -3.3 -3.3 imidazoleglycerol-phosphate dehydratase compare
PS417_26890 -3.3 -5.8 dihydroxy-acid dehydratase compare
PS417_18595 -3.3 -4.2 3-isopropylmalate dehydratase compare
PS417_04415 -3.3 -9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23810 -3.3 -11.4 acetolactate synthase 3 catalytic subunit compare
PS417_25710 -3.3 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_26740 -3.3 -6.5 homoserine acetyltransferase compare
PS417_01580 -3.2 -2.2 imidazole glycerol phosphate synthase compare
PS417_02000 -3.2 -9.5 glutamate synthase compare
PS417_25715 -3.1 -4.6 anthranilate phosphoribosyltransferase compare
PS417_01850 -2.9 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_20985 -2.9 -2.0 porin compare
PS417_25720 -2.9 -8.5 anthranilate synthase component II compare
PS417_23915 -2.9 -3.9 pantoate--beta-alanine ligase compare
PS417_20160 -2.8 -3.9 cysteine synthase compare
PS417_21125 -2.8 -7.7 phosphoadenosine phosphosulfate reductase compare
PS417_23995 -2.7 -1.3 preprotein translocase subunit SecG compare
PS417_03310 -2.7 -8.7 carbonate dehydratase compare
PS417_26745 -2.6 -3.9 methionine biosynthesis protein MetW compare
PS417_20785 -2.5 -5.1 transcriptional regulator compare
PS417_08125 -2.5 -0.9 prephenate dehydratase compare
PS417_24935 -2.4 -1.8 hypothetical protein compare
PS417_07170 -2.3 -4.4 hypothetical protein compare
PS417_02510 -2.3 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26985 -2.3 -5.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_22565 -2.3 -1.1 formyltetrahydrofolate deformylase compare
PS417_23110 -2.2 -5.6 2-isopropylmalate synthase compare
PS417_27800 -2.2 -2.2 exodeoxyribonuclease III compare
PS417_28220 -2.2 -2.4 LysR family transcriptional regulator compare
PS417_05455 -2.2 -6.0 XRE family transcriptional regulator compare
PS417_08130 -2.2 -2.4 aspartate aminotransferase compare
PS417_26995 -2.2 -6.3 phosphoserine phosphatase compare
PS417_23770 -2.1 -2.7 exodeoxyribonuclease V subunit alpha compare
PS417_18690 -2.1 -4.1 aromatic amino acid aminotransferase compare
PS417_27300 -2.1 -1.0 cell division protein ZapA compare
PS417_12855 -2.1 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17215 -2.1 -3.1 peptidylprolyl isomerase compare
PS417_05830 -2.1 -4.1 hypothetical protein compare
PS417_20855 -2.0 -1.6 hypothetical protein compare
PS417_20125 -2.0 -3.4 phosphoribosylglycinamide formyltransferase compare
PS417_08245 -2.0 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27835 -2.0 -4.9 endoribonuclease compare
PS417_02560 -2.0 -1.9 23S rRNA methyltransferase compare
PS417_27870 -2.0 -4.4 ATP-dependent DNA helicase RecG compare
PS417_22450 -1.9 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_13455 -1.9 -3.6 alkaline proteinase inhibitor compare
PS417_02720 -1.9 -1.3 TetR family transcriptional regulator compare
PS417_21630 -1.9 -2.2 magnesium transporter compare
PS417_09420 -1.9 -2.6 LysR family transcriptional regulator compare
PS417_22445 -1.8 -3.5 ATP-dependent DNA helicase RuvB compare
PS417_01570 -1.8 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22520 -1.8 -2.0 histidine kinase compare
PS417_09235 -1.8 -1.2 molecular chaperone compare
PS417_08220 -1.7 -1.0 epimerase compare
PS417_14065 -1.7 -5.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_01095 -1.7 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_26175 -1.6 -1.0 sarcosine oxidase subunit gamma compare
PS417_03260 -1.6 -1.7 5S ribosomal RNA compare
PS417_17240 -1.5 -3.7 trigger factor compare
PS417_07470 -1.5 -1.1 hypothetical protein compare
PS417_00370 -1.5 -1.2 hypothetical protein compare
PS417_15135 -1.4 -1.7 hypothetical protein compare
PS417_02280 -1.4 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_24600 -1.4 -4.0 hydrogenase compare
PS417_00355 -1.4 -2.1 metal ABC transporter permease compare
PS417_16490 -1.4 -1.6 cell division protein FtsK compare
PS417_03925 -1.4 -3.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_17565 -1.4 -2.0 branched-chain amino acid aminotransferase compare
PS417_11705 -1.4 -5.8 cyclic peptide transporter compare
PS417_19425 -1.4 -1.0 allantoicase compare
PS417_00660 -1.4 -1.9 DSBA oxidoreductase compare
PS417_22385 -1.3 -7.7 quinolinate synthase A compare
PS417_07710 -1.3 -4.7 membrane protein compare
PS417_11615 -1.3 -1.5 urea ABC transporter ATP-binding protein compare
PS417_01920 -1.3 -1.0 ATP-dependent protease subunit HslV compare
PS417_10010 -1.3 -2.9 Replication protein P compare
PS417_05510 -1.2 -4.7 alpha/beta hydrolase compare
PS417_18770 -1.2 -4.6 hypothetical protein compare
PS417_07140 -1.2 -2.4 peptidase M48 compare
PS417_00940 -1.2 -4.5 sulfate ABC transporter permease compare
PS417_08090 -1.2 -0.8 3-oxoacyl-ACP reductase compare
PS417_09695 -1.2 -1.7 hydrolase compare
PS417_04185 -1.2 -2.3 hypothetical protein compare
PS417_26695 -1.2 -1.3 uracil phosphoribosyltransferase compare
PS417_06145 -1.2 -1.1 hypothetical protein compare
PS417_12565 -1.2 -2.0 2-dehydro-3-deoxygluconokinase compare
PS417_15400 -1.2 -1.7 hypothetical protein compare
PS417_16510 -1.2 -3.7 Clp protease ClpX compare
PS417_08185 -1.1 -3.2 glycosyl transferase compare
PS417_26615 -1.1 -2.3 triphosphoribosyl-dephospho-CoA synthase compare
PS417_21000 -1.1 -1.8 CrfX protein compare
PS417_24355 -1.1 -1.8 MFS transporter compare
PS417_05505 -1.1 -4.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_04275 -1.1 -7.6 hypothetical protein compare
PS417_16555 -1.1 -1.4 cupin compare
PS417_22690 -1.1 -2.7 phosphogluconate dehydratase compare
PS417_03455 -1.1 -1.3 type III secretion protein compare
PS417_10455 -1.0 -2.8 membrane protein compare
PS417_19655 -1.0 -2.2 chemotaxis protein CheW compare
PS417_09800 -1.0 -1.4 cytosine deaminase compare
PS417_23950 -1.0 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_22575 -1.0 -5.2 exonuclease I compare
PS417_24705 -1.0 -2.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_04385 -1.0 -2.3 organic solvent ABC transporter substrate-binding protein compare
PS417_13195 -1.0 -2.6 RND transporter MFP subunit compare
PS417_04410 -1.0 -1.3 hypothetical protein compare
PS417_22050 -1.0 -3.9 ribonuclease BN compare
PS417_22060 -1.0 -1.2 hypothetical protein compare
PS417_08190 -1.0 -5.9 membrane protein compare
PS417_25315 -1.0 -3.2 membrane protein compare
PS417_07560 -1.0 -1.3 universal stress protein UspA compare
PS417_00455 -1.0 -1.1 hypothetical protein compare
PS417_01145 -0.9 -0.8 taurine transporter ATP-binding subunit compare
PS417_07595 -0.9 -2.8 PasA protein compare
PS417_12840 -0.9 -2.3 TetR family transcriptional regulator compare
PS417_08225 -0.9 -3.4 acetolactate synthase compare
PS417_00900 -0.9 -1.3 4-aminobutyrate aminotransferase compare
PS417_04305 -0.9 -1.2 aspartate ammonia-lyase compare
PS417_07115 -0.9 -5.6 L-aspartate oxidase compare
PS417_15285 -0.9 -1.0 type VI secretion protein compare
PS417_13375 -0.9 -4.4 LysR family transcriptional regulator compare
PS417_01735 -0.9 -1.6 ABC transporter permease compare
PS417_08320 -0.9 -1.6 metal-chelation protein CHAD compare
PS417_18545 -0.9 -2.6 cell division protein compare
PS417_21705 -0.9 -2.1 arginine N-succinyltransferase compare
PS417_07120 -0.9 -3.4 RNA polymerase sigma-H factor compare
PS417_08135 -0.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18055 -0.9 -0.8 general secretion pathway protein GspK compare
PS417_00920 -0.9 -3.1 diguanylate cyclase compare
PS417_22620 -0.9 -2.9 pyruvate kinase compare
PS417_13190 -0.9 -4.8 transporter compare
PS417_00515 -0.9 -4.7 membrane protein compare
PS417_00085 -0.9 -1.8 16S rRNA methyltransferase compare
PS417_23210 -0.9 -1.6 serine acetyltransferase compare
PS417_01620 -0.8 -2.2 preprotein translocase subunit SecB compare
PS417_28350 -0.8 -3.3 fatty acid methyltransferase compare
PS417_02950 -0.8 -1.5 tRNA-dihydrouridine synthase B compare
PS417_08205 -0.8 -3.4 acetyltransferase compare
PS417_27605 -0.8 -3.2 hypothetical protein compare
PS417_15110 -0.8 -3.0 protein BatD compare
PS417_17035 -0.8 -1.0 Cro/Cl family transcriptional regulator compare
PS417_09470 -0.8 -0.9 hypothetical protein compare
PS417_23375 -0.8 -1.2 cytochrome C oxidase compare
PS417_11510 -0.8 -1.1 AraC family transcriptional regulator compare
PS417_21870 -0.8 -1.2 glycerophosphodiester phosphodiesterase compare
PS417_22580 -0.8 -2.0 membrane protein compare
PS417_27505 -0.8 -1.7 transcriptional regulator compare
PS417_10600 -0.8 -1.3 hypothetical protein compare
PS417_27665 -0.8 -3.2 diguanylate cyclase compare
PS417_27865 -0.8 -1.2 LysR family transcriptional regulator compare
PS417_08990 -0.8 -1.6 ABC transporter substrate-binding protein compare
PS417_17125 -0.8 -1.9 transcriptional regulator compare
PS417_16005 -0.8 -1.6 ATPase compare
PS417_19675 -0.8 -2.4 chemotaxis protein CheY compare
PS417_28315 -0.8 -1.9 zinc ABC transporter permease compare
PS417_04590 -0.8 -3.0 methyltransferase compare
PS417_03705 -0.8 -1.9 2-alkenal reductase compare
PS417_28280 -0.8 -1.5 hypothetical protein compare
PS417_12990 -0.8 -2.4 nucleoside hydrolase compare
PS417_06245 -0.8 -1.0 zinc metallopeptidase RseP compare
PS417_01965 -0.8 -0.9 fimbriae biosynthesis protein compare
PS417_02740 -0.8 -1.0 LysR family transcriptional regulator compare
PS417_06200 -0.8 -2.7 protein-PII uridylyltransferase compare
PS417_08155 -0.8 -1.0 integration host factor subunit beta compare
PS417_02365 -0.8 -1.2 hypothetical protein compare
PS417_01645 -0.7 -1.4 cupin compare
PS417_06830 -0.7 -1.5 hypothetical protein compare
PS417_26775 -0.7 -2.6 thiazole synthase compare
PS417_01280 -0.7 -1.5 peptidoglycan-binding protein LysM compare
PS417_14940 -0.7 -1.1 LysR family transcriptional regulator compare
PS417_20960 -0.7 -3.0 Nitrate-binding regulatory protein (nasS) (from data) compare
PS417_18395 -0.7 -1.3 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_22330 -0.7 -1.7 arginine deiminase compare
PS417_03525 -0.7 -1.1 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms