Experiment set14IT035 for Pseudomonas simiae WCS417

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.2 -3.1 3-phosphoglycerate dehydrogenase compare
PS417_24745 -5.8 -6.8 gamma-glutamyl phosphate reductase compare
PS417_02005 -5.1 -12.6 glutamate synthase compare
PS417_27795 -4.9 -1.5 orotate phosphoribosyltransferase compare
PS417_01855 -4.9 -3.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_23545 -4.7 -4.7 gamma-glutamyl kinase compare
PS417_16465 -4.6 -9.2 sirohydrochlorin ferrochelatase compare
PS417_18560 -4.5 -11.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18585 -4.1 -7.3 3-isopropylmalate dehydrogenase compare
PS417_23800 -4.1 -12.5 ketol-acid reductoisomerase compare
PS417_22565 -4.0 -1.2 formyltetrahydrofolate deformylase compare
PS417_00180 -3.9 -2.5 tryptophan synthase subunit alpha compare
PS417_26740 -3.9 -9.5 homoserine acetyltransferase compare
PS417_01560 -3.9 -3.4 imidazoleglycerol-phosphate dehydratase compare
PS417_26730 -3.8 -1.7 pyrroline-5-carboxylate reductase compare
PS417_26745 -3.7 -8.9 methionine biosynthesis protein MetW compare
PS417_12290 -3.7 -8.2 sulfite reductase compare
PS417_25725 -3.6 -12.7 anthranilate synthase component I compare
PS417_02000 -3.5 -12.7 glutamate synthase compare
PS417_05595 -3.5 -8.4 ornithine carbamoyltransferase compare
PS417_23810 -3.5 -10.5 acetolactate synthase 3 catalytic subunit compare
PS417_27195 -3.5 -1.5 N-acetylglutamate synthase compare
PS417_26890 -3.3 -7.8 dihydroxy-acid dehydratase compare
PS417_01580 -3.2 -1.9 imidazole glycerol phosphate synthase compare
PS417_00185 -3.2 -3.8 tryptophan synthase subunit beta compare
PS417_21125 -3.2 -7.9 phosphoadenosine phosphosulfate reductase compare
PS417_18595 -3.1 -4.0 3-isopropylmalate dehydratase compare
PS417_01575 -3.1 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18530 -3.1 -5.6 O-succinylhomoserine sulfhydrylase compare
PS417_23915 -3.0 -5.2 pantoate--beta-alanine ligase compare
PS417_06375 -3.0 -1.3 deoxycytidine triphosphate deaminase compare
PS417_25720 -2.9 -7.7 anthranilate synthase component II compare
PS417_04420 -2.9 -7.2 histidinol dehydrogenase compare
PS417_21630 -2.9 -2.8 magnesium transporter compare
PS417_01565 -2.9 -6.3 imidazole glycerol phosphate synthase compare
PS417_23805 -2.8 -4.2 acetolactate synthase 3 regulatory subunit compare
PS417_25715 -2.8 -4.9 anthranilate phosphoribosyltransferase compare
PS417_18310 -2.7 -2.0 hypothetical protein compare
PS417_23995 -2.7 -1.2 preprotein translocase subunit SecG compare
PS417_07170 -2.7 -3.4 hypothetical protein compare
PS417_23110 -2.6 -5.7 2-isopropylmalate synthase compare
PS417_26985 -2.6 -8.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05975 -2.6 -1.1 chemotaxis protein CheW compare
PS417_25765 -2.6 -1.8 transcriptional regulator compare
PS417_04650 -2.5 -1.1 D-alanine--D-alanine ligase compare
PS417_25710 -2.5 -1.8 indole-3-glycerol-phosphate synthase compare
PS417_01850 -2.4 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26995 -2.3 -7.8 phosphoserine phosphatase compare
PS417_27135 -2.2 -1.0 glutamine synthetase compare
PS417_20160 -2.2 -2.6 cysteine synthase compare
PS417_23770 -2.2 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_02415 -2.1 -2.5 phosphoserine phosphatase compare
PS417_02510 -2.1 -2.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_12855 -2.1 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18600 -2.1 -2.5 isopropylmalate isomerase compare
PS417_03310 -2.0 -4.7 carbonate dehydratase compare
PS417_04220 -2.0 -1.5 4-carboxymuconolactone decarboxylase compare
PS417_03925 -2.0 -5.3 nicotinate-nucleotide pyrophosphorylase compare
PS417_06245 -1.9 -1.7 zinc metallopeptidase RseP compare
PS417_26850 -1.9 -0.8 twin-arginine translocation pathway signal protein compare
PS417_04415 -1.9 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_22445 -1.9 -4.0 ATP-dependent DNA helicase RuvB compare
PS417_02805 -1.9 -1.7 urease subunit gamma compare
PS417_27800 -1.9 -2.5 exodeoxyribonuclease III compare
PS417_20785 -1.8 -4.2 transcriptional regulator compare
PS417_23950 -1.8 -2.2 polynucleotide phosphorylase/polyadenylase compare
PS417_01605 -1.8 -1.4 phosphoglycerate mutase compare
PS417_22385 -1.7 -6.3 quinolinate synthase A compare
PS417_07140 -1.7 -2.9 peptidase M48 compare
PS417_27835 -1.7 -3.9 endoribonuclease compare
PS417_13455 -1.6 -3.9 alkaline proteinase inhibitor compare
PS417_03260 -1.6 -1.5 5S ribosomal RNA compare
PS417_18690 -1.6 -2.7 aromatic amino acid aminotransferase compare
PS417_24605 -1.6 -2.4 thiamine-phosphate pyrophosphorylase compare
PS417_14065 -1.6 -4.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_00345 -1.5 -2.0 copper-binding protein compare
PS417_22050 -1.5 -3.4 ribonuclease BN compare
PS417_05830 -1.5 -2.5 hypothetical protein compare
PS417_27640 -1.5 -1.3 TetR family transcriptional regulator compare
PS417_15875 -1.5 -1.7 LuxR family transcriptional regulator compare
PS417_27870 -1.5 -2.7 ATP-dependent DNA helicase RecG compare
PS417_12870 -1.5 -1.5 enoyl-CoA hydratase compare
PS417_17240 -1.5 -2.4 trigger factor compare
PS417_22690 -1.5 -2.6 phosphogluconate dehydratase compare
PS417_15215 -1.5 -1.8 protein activator of alkane oxidation PraA compare
PS417_01570 -1.5 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_07115 -1.4 -7.9 L-aspartate oxidase compare
PS417_23490 -1.4 -1.0 dihydrofolate reductase compare
PS417_01510 -1.4 -1.8 hypothetical protein compare
PS417_08245 -1.4 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_10715 -1.3 -2.1 Cro/Cl family transcriptional regulator compare
PS417_17610 -1.3 -1.5 AsnC family transcriptional regulator compare
PS417_05500 -1.3 -2.2 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_24935 -1.3 -1.2 hypothetical protein compare
PS417_27005 -1.3 -1.0 membrane protein compare
PS417_06540 -1.3 -1.4 membrane protein compare
PS417_09210 -1.3 -1.0 TetR family transcriptional regulator compare
PS417_26775 -1.3 -3.1 thiazole synthase compare
PS417_08200 -1.2 -2.5 hypothetical protein compare
PS417_27945 -1.2 -1.4 type VI secretion protein ImpA compare
PS417_08220 -1.2 -0.7 epimerase compare
PS417_06145 -1.2 -1.0 hypothetical protein compare
PS417_05455 -1.2 -2.8 XRE family transcriptional regulator compare
PS417_04305 -1.2 -1.1 aspartate ammonia-lyase compare
PS417_22620 -1.2 -2.3 pyruvate kinase compare
PS417_24785 -1.2 -1.6 nucleoside-diphosphate sugar epimerase compare
PS417_07165 -1.2 -3.4 dihydrodipicolinate synthase compare
PS417_18495 -1.2 -1.4 hypothetical protein compare
PS417_05510 -1.1 -3.6 alpha/beta hydrolase compare
PS417_00900 -1.1 -2.1 4-aminobutyrate aminotransferase compare
PS417_08190 -1.1 -7.5 membrane protein compare
PS417_22270 -1.1 -1.6 hypothetical protein compare
PS417_25270 -1.1 -1.9 NrdR family transcriptional regulator compare
PS417_27865 -1.1 -1.7 LysR family transcriptional regulator compare
PS417_09235 -1.1 -0.8 molecular chaperone compare
PS417_24705 -1.1 -1.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_21510 -1.1 -1.6 histidine kinase compare
PS417_15890 -1.1 -1.7 RNA polymerase sigma factor compare
PS417_00155 -1.1 -1.8 2-dehydro-3-deoxygalactonokinase compare
PS417_12565 -1.1 -1.9 2-dehydro-3-deoxygluconokinase compare
PS417_04595 -1.1 -1.6 cell division protein MraZ compare
PS417_18425 -1.1 -1.5 sporulation protein compare
PS417_15585 -1.1 -2.3 DNA repair nucleotidyltransferase compare
PS417_02720 -1.0 -0.8 TetR family transcriptional regulator compare
PS417_18545 -1.0 -2.6 cell division protein compare
PS417_12355 -1.0 -1.2 magnesium chelatase compare
PS417_02950 -1.0 -2.9 tRNA-dihydrouridine synthase B compare
PS417_04275 -1.0 -7.0 hypothetical protein compare
PS417_26240 -1.0 -1.1 N-methylproline demethylase compare
PS417_11705 -1.0 -3.2 cyclic peptide transporter compare
PS417_26695 -1.0 -1.0 uracil phosphoribosyltransferase compare
PS417_23380 -1.0 -1.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_22520 -1.0 -1.4 histidine kinase compare
PS417_08535 -1.0 -2.2 enoyl-CoA hydratase compare
PS417_04390 -1.0 -2.4 toluene tolerance protein compare
PS417_06200 -1.0 -3.5 protein-PII uridylyltransferase compare
PS417_09200 -1.0 -2.0 ABC transporter compare
PS417_12390 -0.9 -1.1 hypothetical protein compare
PS417_03080 -0.9 -1.2 hypothetical protein compare
PS417_15285 -0.9 -0.9 type VI secretion protein compare
PS417_14425 -0.9 -1.9 alkylhydroperoxidase compare
PS417_02160 -0.9 -0.9 hypothetical protein compare
PS417_15705 -0.9 -1.4 nitrate reductase compare
PS417_00705 -0.9 -1.0 MarR family transcriptional regulator compare
PS417_22450 -0.9 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_08205 -0.9 -2.5 acetyltransferase compare
PS417_17215 -0.9 -2.0 peptidylprolyl isomerase compare
PS417_15095 -0.9 -1.7 hypothetical protein compare
PS417_06490 -0.9 -2.4 hypothetical protein compare
PS417_02355 -0.9 -4.5 thiamine biosynthesis protein ThiC compare
PS417_24135 -0.9 -1.3 hypothetical protein compare
PS417_07710 -0.9 -2.2 membrane protein compare
PS417_15915 -0.9 -1.1 hypothetical protein compare
PS417_15135 -0.9 -0.9 hypothetical protein compare
PS417_27300 -0.9 -0.5 cell division protein ZapA compare
PS417_11530 -0.9 -2.4 amidase compare
PS417_25030 -0.9 -2.4 hypothetical protein compare
PS417_24460 -0.9 -1.5 hypothetical protein compare
PS417_10490 -0.9 -1.9 delta-aminolevulinic acid dehydratase compare
PS417_03145 -0.9 -1.4 acetyl-CoA acetyltransferase compare
PS417_00945 -0.9 -1.6 sulfate ABC transporter ATP-binding protein compare
PS417_22795 -0.9 -1.1 exclusion suppressor FxsA compare
PS417_22575 -0.9 -4.5 exonuclease I compare
PS417_27435 -0.9 -3.6 polyphosphate kinase compare
PS417_14550 -0.8 -2.8 acetylpolyamine aminohydrolase compare
PS417_20985 -0.8 -1.0 porin compare
PS417_00370 -0.8 -0.8 hypothetical protein compare
PS417_09150 -0.8 -1.4 energy transducer TonB compare
PS417_07615 -0.8 -3.2 TetR family transcriptional regulator compare
PS417_15085 -0.8 -2.2 ATPase AAA compare
PS417_17565 -0.8 -1.4 branched-chain amino acid aminotransferase compare
PS417_04385 -0.8 -2.2 organic solvent ABC transporter substrate-binding protein compare
PS417_08225 -0.8 -2.3 acetolactate synthase compare
PS417_16510 -0.8 -1.8 Clp protease ClpX compare
PS417_27340 -0.8 -1.4 NADPH:quinone oxidoreductase compare
PS417_26805 -0.8 -0.7 cell division protein FtsE compare
PS417_23025 -0.8 -2.8 murein transglycosylase compare
PS417_24600 -0.8 -3.6 hydrogenase compare
PS417_16045 -0.8 -1.3 acyl-CoA dehydrogenase compare
PS417_20650 -0.8 -3.4 hypothetical protein compare
PS417_20755 -0.8 -1.9 membrane protein compare
PS417_12840 -0.8 -2.3 TetR family transcriptional regulator compare
PS417_28100 -0.8 -2.5 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) compare
PS417_08185 -0.8 -2.2 glycosyl transferase compare
PS417_00465 -0.8 -2.1 hypothetical protein compare
PS417_19160 -0.8 -2.8 hypothetical protein compare
PS417_13790 -0.8 -1.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_18395 -0.8 -1.7 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_07120 -0.8 -2.6 RNA polymerase sigma-H factor compare
PS417_21705 -0.8 -1.6 arginine N-succinyltransferase compare
PS417_23830 -0.8 -4.7 hypothetical protein compare
PS417_27035 -0.8 -1.6 FAD-linked oxidase compare
PS417_00220 -0.8 -1.0 hypothetical protein compare
PS417_16475 -0.8 -1.7 camphor resistance protein CrcB compare
PS417_18105 -0.8 -1.0 iron-dicitrate transporter substrate-binding subunit compare
PS417_08125 -0.8 -0.3 prephenate dehydratase compare
PS417_14940 -0.8 -1.0 LysR family transcriptional regulator compare
PS417_13145 -0.8 -1.2 50S ribosomal protein L21 compare
PS417_12845 -0.8 -1.7 NAD(P)H dehydrogenase compare
PS417_08410 -0.8 -2.0 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms