| | gene | name | fitness | t score | description | |
|---|
| b2741 | rpoS | +4.4 | 20.6 | RNA polymerase sigma factor (NCBI) | compare |
| b1831 | proQ | +3.9 | 7.1 | putative solute/DNA competence effector (NCBI) | compare |
| b1231 | tyrT | +1.6 | 0.9 | tRNA-Tyr (NCBI) | compare |
| b1882 | cheY | +1.6 | 0.9 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b4701 | sokX | +1.6 | 1.0 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3133 | agaV | +1.4 | 1.4 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b2444 | yffM | +1.4 | 2.0 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b2579 | yfiD | +1.2 | 2.3 | pyruvate formate lyase subunit (NCBI) | compare |
| b0503 | ybbB | +1.1 | 1.5 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b1103 | ycfF | +1.1 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0142 | folK | +1.0 | 0.6 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b2229 | b2229 | +1.0 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4416 | rybA | +1.0 | 1.1 | unknown RNA (NCBI) | compare |
| b1607 | ydgC | +1.0 | 1.2 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b2804 | fucU | +1.0 | 1.7 | L-fucose mutarotase (NCBI) | compare |
| b2792 | yqcC | +0.9 | 2.1 | hypothetical protein (NCBI) | compare |
| b1778 | yeaA | +0.9 | 1.6 | methionine sulfoxide reductase B (NCBI) | compare |
| b3672 | ivbL | +0.9 | 2.0 | ilvB operon leader peptide (NCBI) | compare |
| b0468 | ybaN | +0.9 | 1.6 | conserved inner membrane protein (NCBI) | compare |
| b4552 | yrhC | +0.9 | 0.6 | no description | compare |
| b1644 | b1644 | +0.9 | 2.3 | putative membrane protein (VIMSS) | compare |
| b0613 | citG | +0.9 | 1.6 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b2643 | yfjX | +0.9 | 1.4 | CP4-57 prophage; predicted antirestriction protein (NCBI) | compare |
| b2586 | yfiM | +0.9 | 2.3 | predicted protein (RefSeq) | compare |
| b1446 | ydcY | +0.9 | 1.2 | hypothetical protein (NCBI) | compare |
| b0641 | rlpB | +0.9 | 1.7 | minor lipoprotein (NCBI) | compare |
| b3042 | b3042 | +0.9 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4595 | yciY | +0.9 | 1.5 | hypothetical protein (RefSeq) | compare |
| b4646 | yrdE | +0.9 | 1.6 | no description | compare |
| b1946 | fliN | +0.9 | 2.5 | flagellar motor switch protein (NCBI) | compare |
| b1104 | ycfL | +0.9 | 1.4 | hypothetical protein (NCBI) | compare |
| b1953 | b1953 | +0.9 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4407 | thiS | +0.8 | 1.3 | sulfur carrier protein ThiS (NCBI) | compare |
| b3107 | yhaL | +0.8 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2142 | yohK | +0.8 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b4373 | rimI | +0.8 | 1.7 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b4071 | nrfB | +0.8 | 1.5 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b4551 | yheV | +0.8 | 1.2 | hypothetical protein (NCBI) | compare |
| b2300 | yfcE | +0.8 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1055 | yceA | +0.8 | 1.4 | hypothetical protein (NCBI) | compare |
| b1613 | manA | +0.8 | 0.8 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b2644 | yfjY | +0.8 | 1.8 | CP4-57 prophage; predicted DNA repair protein (NCBI) | compare |
| b2209 | eco | +0.8 | 1.2 | ecotin precursor (NCBI) | compare |
| b1557 | cspB | +0.8 | 0.8 | Qin prophage; cold shock protein (NCBI) | compare |
| b1461 | ydcE | +0.8 | 1.2 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b0840 | deoR | +0.8 | 2.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2377 | yfdY | +0.8 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b0937 | ssuE | +0.8 | 1.3 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b1618 | uidR | +0.8 | 2.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0451 | amtB | +0.7 | 1.7 | ammonium transporter (NCBI) | compare |
| b0550 | rusA | +0.7 | 1.4 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b2787 | gudD | +0.7 | 2.1 | (D)-glucarate dehydratase 1 (NCBI) | compare |
| b1677 | lpp | +0.7 | 1.0 | murein lipoprotein (NCBI) | compare |
| b1921 | fliZ | +0.7 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1709 | btuD | +0.7 | 0.6 | vitamin B12-transporter ATPase (NCBI) | compare |
| b0481 | ybaK | +0.7 | 2.5 | hypothetical protein (NCBI) | compare |
| b1743 | spy | +0.7 | 1.0 | envelope stress induced periplasmic protein (NCBI) | compare |
| b0357 | yaiN | +0.7 | 1.1 | putative alpha helix chain (VIMSS) | compare |
| b3882 | yihU | +0.7 | 1.8 | predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b3375 | yhfR | +0.7 | 4.4 | putative transcriptional regulator (VIMSS) | compare |
| b4589 | ylcI | +0.7 | 1.0 | hypothetical protein (RefSeq) | compare |
| b1741 | ydjQ | +0.7 | 2.0 | endonuclease of nucleotide excision repair (NCBI) | compare |
| b4545 | ypdJ | +0.7 | 0.9 | no description | compare |
| b1218 | chaC | +0.7 | 1.8 | regulatory protein for cation transport (RefSeq) | compare |
| b1072 | flgA | +0.7 | 1.8 | flagellar basal body P-ring biosynthesis protein A (NCBI) | compare |
| b1013 | ycdC | +0.7 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1480 | sra | +0.7 | 0.7 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b2433 | b2433 | +0.6 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0247 | ykfG | +0.6 | 0.8 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b3990 | thiH | +0.6 | 1.9 | thiamine biosynthesis protein ThiH (NCBI) | compare |
| b4508 | peaD | +0.6 | 2.1 | putative sensory transduction regulator (VIMSS) | compare |
| b4521 | ycgI | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b2080 | b2080 | +0.6 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2944 | sprT | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b1727 | yniC | +0.6 | 0.9 | predicted hydrolase (NCBI) | compare |
| b1443 | ydcV | +0.6 | 2.0 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b1514 | lsrC | +0.6 | 0.9 | AI2 transporter (NCBI) | compare |
| b1867 | yecD | +0.6 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1307 | pspD | +0.6 | 1.0 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b2051 | wcaH | +0.6 | 0.9 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b4644 | ypjI | +0.6 | 1.9 | no description | compare |
| b0191 | yaeJ | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b1591 | b1591 | +0.6 | 0.6 | putative oxidoreductase component (VIMSS) | compare |
| b0505 | allA | +0.6 | 1.5 | ureidoglycolate hydrolase (NCBI) | compare |
| b1553 | ydfP | +0.6 | 0.9 | Qin prophage; conserved protein (NCBI) | compare |
| b2911 | ssrS | +0.6 | 0.6 | 6S regulatory RNA (NCBI) | compare |
| b1837 | yebW | +0.6 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3605 | lldD | +0.6 | 2.8 | L-lactate dehydrogenase, FMN-linked (NCBI) | compare |
| b1465 | narV | +0.6 | 1.0 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b0729 | sucD | +0.6 | 1.4 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b1672 | ydhW | +0.6 | 1.9 | hypothetical protein (NCBI) | compare |
| b1260 | trpA | +0.6 | 2.1 | tryptophan synthase subunit alpha (NCBI) | compare |
| b1312 | ycjP | +0.6 | 2.3 | predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3208 | mtgA | +0.6 | 1.8 | monofunctional biosynthetic peptidoglycan transglycosylase (NCBI) | compare |
| b1394 | paaG | +0.6 | 1.4 | enoyl-CoA hydratase (NCBI) | compare |
| b1752 | ydjZ | +0.6 | 1.6 | conserved inner membrane protein (NCBI) | compare |
| b0785 | moaE | +0.6 | 2.2 | molybdopterin synthase, large subunit (NCBI) | compare |
| b3032 | cpdA | +0.6 | 2.4 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b1184 | umuC | +0.6 | 2.5 | DNA polymerase V subunit UmuC (NCBI) | compare |
| b3753 | rbsR | +0.6 | 3.4 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b0841 | ybjG | +0.6 | 1.6 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b2004 | yeeU | +0.6 | 1.4 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b1844 | exoX | +0.6 | 1.9 | exodeoxyribonuclease X (NCBI) | compare |
| b3293 | yhdN | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b1542 | ydfI | +0.6 | 1.1 | predicted mannonate dehydrogenase (NCBI) | compare |
| b1656 | sodB | +0.6 | 1.0 | superoxide dismutase, Fe (NCBI) | compare |
| b1263 | trpD | +0.6 | 1.4 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b0556 | rzpD | +0.6 | 1.6 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b2317 | dedA | +0.6 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b2145 | yeiS | +0.5 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b1827 | kdgR | +0.5 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1940 | fliH | +0.5 | 2.3 | flagellar biosynthesis; export of flagellar proteins? (VIMSS) | compare |
| b4608 | ryfC | +0.5 | 1.5 | Novel sRNA, function unknown (RefSeq) | compare |
| b2208 | napF | +0.5 | 1.9 | ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI) | compare |
| b1248 | b1248 | +0.5 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0852 | rimK | +0.5 | 1.6 | ribosomal protein S6 modification protein (NCBI) | compare |
| b0502 | ylbG | +0.5 | 0.9 | no description | compare |
| b1853 | yebK | +0.5 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1378 | ydbK | +0.5 | 2.0 | fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein (NCBI) | compare |
| b1651 | gloA | +0.5 | 1.2 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b2531 | iscR | +0.5 | 0.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0285 | yagS | +0.5 | 1.0 | predicted oxidoreductase with FAD-binding domain (NCBI) | compare |
| b4444 | rygA | +0.5 | 1.4 | unknown RNA (NCBI) | compare |
| b1221 | narL | +0.5 | 1.8 | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI) | compare |
| b1140 | intE | +0.5 | 2.6 | e14 prophage; predicted integrase (NCBI) | compare |
| b1044 | ymdA | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b0999 | cbpM | +0.5 | 1.2 | modulator of CbpA co-chaperone (NCBI) | compare |
| b3718 | yieK | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b0717 | ybgP | +0.5 | 2.3 | predicted assembly protein (NCBI) | compare |
| b2398 | yfeC | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1914 | uvrY | +0.5 | 1.5 | response regulator (NCBI) | compare |
| b2635 | ypjK | +0.5 | 1.2 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b0018 | mokC | +0.5 | 0.6 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b4695 | ykgT | +0.5 | 0.7 | no description | compare |
| b2182 | bcr | +0.5 | 1.5 | bicyclomycin/multidrug efflux system (NCBI) | compare |
| b1573 | ydfC | +0.5 | 0.6 | Qin prophage; predicted protein (RefSeq) | compare |
| b4387 | ytjB | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b4127 | yjdJ | +0.5 | 2.3 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2439 | eutL | +0.5 | 1.5 | predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI) | compare |
| b4438 | cyaR | +0.5 | 1.0 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b4592 | yccB | +0.5 | 0.9 | hypothetical protein (RefSeq) | compare |
| b0761 | modE | +0.5 | 2.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4636 | ybfI | +0.5 | 1.9 | no description | compare |
| b1361 | ydaW | +0.5 | 0.3 | orf, hypothetical protein (VIMSS) | compare |
| b0994 | torT | +0.5 | 1.7 | periplasmic sensory protein associated with the TorRS two-component regulatory system (NCBI) | compare |
| b1370 | insH-5 | +0.5 | 0.5 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b2094 | gatA | +0.5 | 1.8 | galactitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1120 | cobB | +0.5 | 1.4 | deacetylase of acs and cheY, regulates chemotaxis (NCBI) | compare |
| b2202 | napC | +0.5 | 1.6 | nitrate reductase, cytochrome c-type, periplasmic (NCBI) | compare |
| b1795 | yeaQ | +0.5 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b1388 | paaA | +0.5 | 1.1 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b0765 | modC | +0.5 | 1.5 | molybdate transporter subunit (NCBI) | compare |
| b1180 | ycgM | +0.5 | 1.4 | predicted isomerase/hydrolase (NCBI) | compare |
| b2939 | yqgB | +0.5 | 0.7 | predicted protein (RefSeq) | compare |
| b1314 | b1314 | +0.5 | 1.3 | putative transient receptor potential locus (VIMSS) | compare |
| b2698 | recX | +0.5 | 1.0 | RecA regulator RecX (NCBI) | compare |
| b4370 | leuQ | +0.5 | 0.8 | tRNA-Leu (NCBI) | compare |
| b2123 | yehR | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4215 | ytfI | +0.4 | 0.4 | hypothetical protein (NCBI) | compare |
| b1602 | pntB | +0.4 | 1.5 | pyridine nucleotide transhydrogenase (NCBI) | compare |
| b1278 | pgpB | +0.4 | 0.7 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b2783 | chpR | +0.4 | 0.8 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b1562 | hokD | +0.4 | 1.0 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b2262 | menB | +0.4 | 0.7 | naphthoate synthase (NCBI) | compare |
| b2506 | yfgI | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b1756 | ynjD | +0.4 | 1.7 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2268 | elaC | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1491 | yddW | +0.4 | 2.0 | predicted liprotein (NCBI) | compare |
| b0951 | pqiB | +0.4 | 2.2 | paraquat-inducible protein B (NCBI) | compare |
| b0707 | ybgA | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b0442 | ybaV | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b1635 | gst | +0.4 | 1.4 | glutathionine S-transferase (NCBI) | compare |
| b2728 | hypC | +0.4 | 1.5 | protein required for maturation of hydrogenases 1 and 3 (NCBI) | compare |
| b4509 | ylcG | +0.4 | 0.8 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1253 | yciA | +0.4 | 1.1 | predicted hydrolase (NCBI) | compare |
| b0250 | ykfB | +0.4 | 1.3 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b0784 | moaD | +0.4 | 1.1 | molybdopterin synthase, small subunit (NCBI) | compare |
| b3356 | yhfA | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b1025 | ycdT | +0.4 | 0.5 | predicted diguanylate cyclase (NCBI) | compare |
| b4493 | gapC | +0.4 | 0.9 | no description | compare |
| b2256 | yfbH | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b3351 | kefG | +0.4 | 1.6 | glutathione-regulated potassium-efflux system ancillary protein (NCBI) | compare |
| b3106 | yhaK | +0.4 | 1.1 | predicted pirin-related protein (NCBI) | compare |
| b2853 | ygeI | +0.4 | 0.2 | hypothetical protein (NCBI) | compare |
| b1793 | yoaF | +0.4 | 0.9 | conserved outer membrane protein (NCBI) | compare |
| b1839 | yebY | +0.4 | 0.6 | hypothetical protein (NCBI) | compare |
| b1796 | yoaG | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b4573 | insZ | +0.4 | 1.1 | no description | compare |
| b3188 | sfsB | +0.4 | 1.3 | DNA-binding transcriptional activator of maltose metabolism (NCBI) | compare |
| b1217 | chaB | +0.4 | 0.3 | cation transport regulator (NCBI) | compare |
| b2727 | hypB | +0.4 | 1.5 | GTP hydrolase involved in nickel liganding into hydrogenases (NCBI) | compare |
| b1819 | manZ | +0.4 | 1.1 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b4002 | yjaI | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3119 | tdcR | +0.4 | 0.8 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b3144 | yraJ | +0.4 | 2.5 | predicted outer membrane protein (NCBI) | compare |
| b4395 | ytjC | +0.4 | 1.9 | phosphoglycerate mutase (NCBI) | compare |
| b1639 | ydhA | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3437 | gntK | +0.4 | 1.7 | gluconokinase 2, thermoresistant (VIMSS) | compare |
| b0325 | yahK | +0.4 | 2.2 | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI) | compare |
| b1622 | malY | +0.4 | 1.2 | bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon (NCBI) | compare |