Experiment set14IT020 for Agrobacterium fabrum C58

Compare to:

Xylobiose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -7.7 -6.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu0679 -7.5 -5.2 ATP phosphoribosyltransferase compare
Atu2036 -6.8 -13.9 acetolactate synthase III, large subunit compare
Atu1205 -6.8 -15.8 threonine dehydratase compare
Atu0432 -6.7 -11.3 O-succinylhomoserine sulfhydrylase compare
Atu1140 -6.7 -6.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1141 -6.6 -6.5 Phosphoribosylglycinamide synthetase compare
Atu2040 -6.6 -4.6 phosphoserine phosphatase compare
Atu0099 -6.6 -12.7 prephenate dehydratase compare
Atu2264 -6.6 -14.7 2-isopropylmalate synthase compare
Atu3707 -6.6 -4.5 phosphoserine aminotransferase compare
Atu1588 -6.5 -10.8 homoserine dehydrogenase compare
Atu2709 -6.4 -19.7 3-isopropylmalate dehydratase, large subunit compare
Atu2726 -6.4 -23.3 pyruvate carboxylase compare
Atu2791 -6.3 -9.7 3-isopropylmalate dehydrogenase compare
Atu2650 -6.3 -15.3 glycerol-3-phosphate dehydrogenase compare
Atu3706 -6.3 -7.5 D-3-phosphoglycerate dehydrogenase compare
Atu1844 -6.3 -4.3 Phosphoribosylformylglycinamidine synthetase compare
Atu3237 -6.1 -5.9 sugar ABC transporter permease conserved
Atu0038 -6.0 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1845 -6.0 -5.8 phosphoribosylformylglycinamidine synthase I compare
Atu4482 -5.9 -15.5 xylulokinase conserved
Atu0678 -5.6 -9.4 histidyl-tRNA synthetase compare
Atu1075 -5.6 -7.6 amidophosphoribosyltransferase compare
Atu3755 -5.5 -5.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2274 -5.5 -11.8 cation efflux system protein compare
Atu1850 -5.5 -5.2 phosphoribosylformylglycinamidine synthetase II compare
Atu0537 -5.3 -7.3 histidinol dehydrogenase compare
Atu3885 -5.3 -10.1 inositol monophosphatase compare
Atu0043 -5.3 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu3240 -5.3 -14.2 ROK family transcriptional regulator compare
Atu1687 -5.3 -5.1 anthranilate phosphoribosyltransferase compare
Atu1359 -5.3 -2.0 dnaK deletion suppressor protein compare
Atu2289 -5.2 -8.7 anthranilate synthase component I and II compare
Atu2718 -5.2 -10.2 homoserine O-succinyltransferase compare
Atu0647 -5.0 -4.9 phosphoribosylamine--glycine ligase compare
Atu0041 -4.9 -3.4 glutamine amidotransferase compare
Atu4483 -4.9 -16.0 xylose isomerase conserved
Atu3238 -4.9 -14.8 sugar ABC transporter permease conserved
Atu0486 -4.8 -3.3 dihydroorotate dehydrogenase compare
Atu3241 -4.8 -11.5 dehydrogenase conserved
Atu0641 -4.8 -4.5 hypothetical protein compare
Atu3242 -4.6 -8.8 hypothetical protein conserved
Atu0039 -4.6 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0400 -4.5 -3.1 orotate phosphoribosyltransferase compare
Atu3239 -4.5 -17.5 sugar ABC transporter substrate-binding protein conserved
Atu3469 -4.3 -3.0 phosphoglyceromutase compare
Atu1307 -4.2 -4.1 dihydroorotase compare
Atu3754 -4.2 -5.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0030 -4.1 -2.8 phosphocarrier protein HPr compare
Atu1308 -4.1 -4.6 aspartate carbamoyl transferase catalytic subunit compare
Atu3236 -4.1 -12.0 sugar ABC transporter ATPase compare
Atu0298 -4.1 -2.8 orotidine 5 compare
Atu2790 -4.1 -2.3 3-isopropylmalate dehydratase, small subunit compare
Atu2747 -4.0 -14.8 hypothetical protein compare
Atu2015 -4.0 -13.1 aminotransferase compare
Atu4481 -3.9 -8.1 LacI family transcriptional regulator compare
Atu0017 -3.8 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0399 -3.8 -2.6 dihydroorotase compare
Atu3482 -3.8 -10.5 pantoate--beta-alanine ligase compare
Atu3483 -3.7 -7.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1688 -3.6 -2.5 indole-3-glycerol-phosphate synthase compare
Atu0040 -3.5 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2548 -3.5 -16.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1686 -3.4 -12.7 peptidyl-prolyl cis-trans isomerse D compare
Atu3731 -3.3 -11.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu3739 -3.2 -3.5 phosphoglycerate kinase compare
Atu1456 -3.1 -12.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3783 -3.0 -15.7 glutamate synthase subunit beta compare
Atu1589 -3.0 -7.5 aminotransferase, class I compare
Atu1463 -2.9 -8.4 glycine cleavage system component H compare
Atu4166 -2.9 -3.8 UDP-glucose 4-epimerase compare
Atu1454 -2.9 -6.7 siroheme synthase compare
Atu2155 -2.9 -17.1 methionine synthase compare
Atu0031 -2.8 -1.5 PTS system, IIA component compare
Atu1464 -2.7 -10.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu8018 -2.7 -1.8 hypothetical protein compare
Atu0029 -2.7 -4.7 S-adenosylhomocysteine hydrolase compare
Atu4711 -2.6 -7.1 two component sensor kinase compare
Atu1455 -2.6 -3.0 hypothetical protein compare
Atu3784 -2.5 -17.9 glutamate synthase large subunit compare
Atu1462 -2.3 -11.4 glycine cleavage system protein P2 compare
Atu0598 -2.3 -11.9 phosphogluconate dehydratase compare
Atu4615 -2.2 -10.3 glucose-1-phosphate thymidylyltransferase compare
Atu4613 -2.2 -14.0 glycosyltransferase compare
Atu4617 -2.2 -12.5 dTDP-D-glucose-4,6-dehydratase compare
Atu1620 -2.2 -9.6 triosephosphate isomerase compare
Atu3663 -2.1 -2.3 hypothetical protein compare
Atu4614 -2.1 -9.6 glycosyltransferase compare
Atu2183 -2.0 -9.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3353 -2.0 -11.0 mannose-1-phosphate guanylyltransferase compare
Atu4618 -2.0 -8.9 dTDP-rhamnose-3,5-epimerase compare
Atu5160 -1.8 -3.0 transcriptional regulator protein compare
Atu3311 -1.8 -13.3 phosphomannose isomerase compare
Atu0047 -1.8 -12.6 malate synthase G compare
Atu0346 -1.7 -2.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1030 -1.6 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu5115 -1.6 -1.6 hypothetical protein compare
Atu2125 -1.6 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu4773 -1.5 -1.6 two component response regulator compare
Atu2209 -1.5 -4.2 pyrroline-5-carboxylate reductase compare
Atu1457 -1.5 -1.6 hypothetical protein compare
Atu8115 -1.4 -4.3 Hypothetical Protein compare
Atu0536 -1.4 -6.5 hypothetical protein compare
Atu0062 -1.4 -7.1 transcriptional regulator, ROK family compare
Atu2205 -1.4 -5.3 transcriptional regulator, MarR family compare
Atu1446 -1.4 -1.3 two component response regulator compare
Atu2239 -1.3 -2.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0188 -1.2 -3.4 ABC transporter, membrane spanning protein (peptide) compare
Atu1182 -1.2 -2.7 hypothetical protein compare
Atu0533 -1.2 -2.0 putative inhibitor of septum formation compare
Atu4616 -1.2 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu2379 -1.2 -8.0 phosphomannomutase compare
Atu5142 -1.2 -1.4 hypothetical protein compare
Atu4317 -1.2 -2.7 TetR family transcriptional regulator compare
Atu1685 -1.1 -1.1 hypothetical protein compare
Atu0101 -1.1 -3.3 cytochrome c compare
Atu0803 -1.1 -8.3 pyruvate,orthophosphate dikinase compare
Atu0201 -1.1 -2.2 hypothetical protein compare
Atu0086 -1.1 -1.2 ribosome-binding factor A compare
Atu2684 -1.0 -1.4 hypothetical protein compare
Atu8138 -1.0 -1.7 hypothetical protein compare
Atu2832 -1.0 -3.4 tRNA modification GTPase compare
Atu0769 -0.9 -1.0 protoheme IX farnesyltransferase compare
Atu2237 -0.9 -3.0 cytochrome c1 compare
Atu0434 -0.9 -1.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1847 -0.9 -2.0 hypothetical protein compare
Atu2831 -0.9 -2.9 glucose inhibited division protein A compare
Atu3299 -0.9 -1.6 hypothetical protein compare
Atu1445 -0.9 -3.3 two component sensor kinase compare
Atu1546 -0.9 -2.9 transcriptional regulator, MerR family compare
Atu3115 -0.9 -3.4 TetR family transcriptional regulator compare
Atu3009 -0.8 -1.2 exopolysaccharide production protein compare
Atu2235 -0.8 -1.3 hypothetical protein compare
Atu1904 -0.8 -1.6 transcriptional regulator compare
Atu3235 -0.8 -4.7 hypothetical protein compare
Atu0786 -0.8 -4.3 peptidase, family M16 compare
Atu1327 -0.8 -2.7 NADH-ubiquinone oxidoreductase compare
Atu1163 -0.8 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu5451 -0.8 -0.8 hypothetical protein compare
Atu0845 -0.8 -3.9 hypothetical protein compare
Atu8087 -0.8 -0.7 putative peptidoglycan binding protein compare
Atu2200 -0.8 -1.8 cold shock protein compare
Atu3234 -0.8 -4.4 NAD binding oxidoreductase compare
Atu0401 -0.8 -2.9 fructokinase compare
Atu3486 -0.8 -1.8 DeoR family transcriptional regulator compare
Atu0606 -0.8 -2.3 hypothetical protein compare
Atu3008 -0.8 -1.0 hypothetical protein compare
Atu1439 -0.8 -1.0 hypothetical protein compare
Atu2123 -0.8 -3.3 methylenetetrahydrofolate reductase compare
Atu3999 -0.8 -2.0 dithiobiotin synthetase compare
Atu4346 -0.8 -3.2 hypothetical protein compare
Atu8117 -0.8 -1.4 hypothetical protein compare
Atu1447 -0.8 -2.0 two component sensor kinase compare
Atu1339 -0.8 -2.0 ribonuclease E compare
Atu3780 -0.7 -2.9 hypothetical protein compare
Atu4873 -0.7 -2.9 TetR family transcriptional regulator compare
Atu5427 -0.7 -1.6 hypothetical protein compare
Atu2376 -0.7 -0.5 hypothetical protein compare
Atu0141 -0.7 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu1028 -0.7 -1.5 hypothetical protein compare
Atu2083 -0.7 -2.9 DNA repair protein RecN compare
Atu2441 -0.7 -1.8 RNA methylase compare
Atu4133 -0.7 -1.8 hypothetical protein compare
Atu3604 -0.7 -3.0 hypoxanthine phosphoribosyltransferase compare
Atu0361 -0.7 -1.4 transcriptional regulator compare
Atu0181 -0.7 -2.4 hypothetical protein compare
Atu2554 -0.7 -1.1 lysyl-tRNA synthetase compare
Atu3732 -0.7 -4.3 hemolysin compare
Atu4743 -0.7 -3.3 LacI family transcriptional regulator compare
Atu0977 -0.7 -2.2 serine protease DO-like protease compare
Atu1535 -0.7 -1.8 cytochrome c oxidase, FixQ chain compare
Atu8054 -0.7 -0.4 hypothetical protein compare
Atu0354 -0.7 -1.5 ferric uptake regulator compare
Atu3730 -0.7 -1.0 hypothetical protein compare
Atu1074 -0.6 -3.7 NAD/NADP dependent oxidoreductase compare
Atu0332 -0.6 -4.0 RNA polymerase sigma-54 factor compare
Atu4176 -0.6 -2.1 hypothetical protein compare
Atu3001 -0.6 -1.9 hypothetical protein compare
Atu4882 -0.6 -1.0 hypothetical protein compare
Atu1232 -0.6 -1.3 hypothetical protein compare
Atu4477 -0.6 -3.3 TetR family transcriptional regulator compare
Atu0471 -0.6 -1.5 hypothetical protein compare
Atu1683 -0.6 -1.4 hypothetical protein compare
Atu2249 -0.6 -0.8 hypothetical protein compare
Atu0535 -0.6 -2.4 hypothetical protein compare
Atu0894 -0.6 -1.3 ABC transporter, membrane spanning protein compare
Atu3688 -0.6 -2.6 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu1647 -0.6 -3.2 ABC transporter, membrane spanning protein compare
Atu4446 -0.6 -3.3 hypothetical protein compare
Atu2634 -0.6 -1.5 hypothetical protein compare
Atu0205 -0.6 -4.5 methylmalonate-semialdehyde dehydrogenase compare
Atu2382 -0.6 -1.7 hypothetical protein compare
Atu4540 -0.6 -2.0 protocatechuate 3,4-dioxygenase subunit beta compare
Atu4541 -0.6 -3.2 carboxymuconolactone decarboxylase compare
Atu0768 -0.6 -3.7 cytochrome-c oxidase chain I compare
Atu2620 -0.6 -0.9 hypothetical protein compare
Atu0331 -0.6 -1.2 sigma-54 modulation protein compare
Atu2746 -0.6 -2.1 hypothetical protein compare
Atu2113 -0.6 -1.3 N-acetylmuramoyl-L-alanine amidase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Xylobiose in Agrobacterium fabrum C58

For carbon source Xylobiose across organisms