Experiment set14IT018 for Agrobacterium fabrum C58

Compare to:

Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) carbon source

200 most detrimental genes:

  gene name fitness t score description  
Atu4897 +3.1 10.4 hypothetical protein compare
Atu3001 +2.4 14.2 hypothetical protein compare
Atu4894 +2.3 17.2 transposase compare
Atu3005 +2.3 5.0 hypothetical protein compare
Atu3009 +2.2 5.4 exopolysaccharide production protein compare
Atu4896 +2.2 7.5 acetyltransferase compare
Atu4893 +2.1 16.0 hypothetical protein compare
Atu3008 +2.1 5.2 hypothetical protein compare
Atu3006 +2.1 8.3 hypothetical protein compare
Atu4892 +1.9 16.8 hypothetical protein compare
Atu4888 +1.9 11.6 hypothetical protein compare
Atu3010 +1.8 13.9 hypothetical protein compare
Atu4890 +1.8 7.4 IS426 transposase compare
Atu3014 +1.8 7.0 hypothetical protein compare
Atu4889 +1.7 10.4 hypothetical protein compare
Atu3012 +1.7 5.3 hypothetical protein compare
Atu3016 +1.7 13.0 phosphoglyceromutase compare
Atu3011 +1.6 8.6 ArsR family transcriptional regulator compare
Atu4884 +1.6 4.7 hypothetical protein compare
Atu3013 +1.5 7.4 hypothetical protein compare
Atu3015 +1.5 10.2 hypothetical protein compare
Atu4882 +1.4 4.7 hypothetical protein compare
Atu4887 +1.4 8.1 hypothetical protein compare
Atu8202 +1.4 5.6 hypothetical protein compare
Atu4879 +1.4 11.3 hypothetical protein compare
Atu4881 +1.4 7.9 hypothetical protein compare
Atu3018 +1.3 5.2 hypothetical protein compare
Atu4880 +1.3 9.9 AraC family transcriptional regulator compare
Atu3019 +1.3 9.4 hypothetical protein compare
Atu3021 +1.3 9.3 sugar ABC transporter ATPase compare
Atu4878 +1.2 7.2 hypothetical protein compare
Atu3017 +1.2 3.2 phosphoglyceromutase compare
Atu3020 +1.2 8.3 GntR family transcriptional regulator compare
Atu3022 +1.2 8.6 sugar ABC transporter permease compare
Atu8054 +1.2 1.7 hypothetical protein compare
Atu4877 +1.2 9.5 short-chain dehydrogenase compare
Atu3023 +1.1 7.4 sugar ABC transporter permease compare
Atu3024 +1.1 8.2 sugar ABC transporter permease compare
Atu4874 +1.0 7.0 hypothetical protein compare
Atu4876 +1.0 8.4 oxidoreductase compare
Atu8093 +1.0 5.2 hypothetical protein compare
Atu3025 +0.9 8.4 oligo alginate lyase compare
Atu3026 +0.9 6.6 short chain dehydrogenase compare
Atu3032 +0.9 3.4 hypothetical protein compare
Atu4869 +0.9 4.6 hypothetical protein compare
Atu4872 +0.9 6.7 LysR family transcriptional regulator compare
Atu4875 +0.8 5.9 hypothetical protein compare
Atu3027 +0.8 6.8 dehydrogenase compare
Atu3029 +0.8 5.7 glucarate dehydratase compare
Atu1219 +0.8 1.2 hypothetical protein compare
Atu4867 +0.8 5.5 hypothetical protein compare
Atu4868 +0.8 5.9 oxidoreductase compare
Atu3028 +0.8 5.1 hypothetical protein compare
Atu4864 +0.7 3.5 MarR family transcriptional regulator compare
Atu4866 +0.7 5.3 hypothetical protein compare
Atu1952 +0.7 1.7 hypothetical protein compare
Atu4870 +0.7 5.7 NADP-dependent quinone oxidoreductase compare
Atu0640 +0.7 1.0 hypothetical protein compare
Atu1836 +0.7 2.4 hypothetical protein compare
Atu6189 +0.7 1.5 protein secretion chaperone compare
Atu1503 +0.7 1.5 hypothetical protein compare
Atu3030 +0.7 4.5 hypothetical protein compare
Atu0842 +0.7 1.6 hypothetical protein compare
Atu4865 +0.7 5.6 oxidoreductase compare
Atu0565 +0.6 3.3 hypothetical protein compare
Atu4861 +0.6 3.7 IS21 family transposase compare
Atu5451 +0.6 1.2 hypothetical protein compare
Atu3461 +0.6 1.1 GntR family transcriptional regulator compare
Atu2800 +0.6 1.7 precorrin-3B C17-methyltransferase compare
Atu5010 +0.6 2.7 hypothetical protein compare
Atu5115 +0.6 1.4 hypothetical protein compare
Atu6036 +0.6 1.1 entry-exclusion protein compare
Atu0912 +0.6 1.1 Na+/H+ antiporter compare
Atu3035 +0.6 5.3 two component response regulator compare
Atu4862 +0.6 4.9 IS21 family transposase compare
Atu3033 +0.6 4.1 hypothetical protein compare
Atu8195 +0.6 1.1 hypothetical protein compare
Atu8041 +0.6 2.2 hypothetical protein compare
Atu5489 +0.6 2.1 hypothetical protein compare
Atu0530 +0.5 3.0 UDP-galactose 4-epimerase compare
Atu8099 +0.5 1.6 hypothetical protein compare
Atu3598 +0.5 1.3 thiol:disulfide interchange protein compare
Atu3045 +0.5 3.4 hypothetical protein compare
Atu0386 +0.5 1.5 hypothetical protein compare
Atu0109 +0.5 2.1 transcriptional regulator, MarR family compare
Atu1287 +0.5 2.0 hypothetical protein compare
Atu3040 +0.5 3.8 hypothetical protein compare
Atu1110 +0.5 1.3 cytosol aminopeptidase compare
Atu1566 +0.5 1.0 hypothetical protein compare
Atu5142 +0.5 1.0 hypothetical protein compare
Atu3031 +0.5 1.3 hypothetical protein compare
Atu3034 +0.5 3.0 ROK family transcriptional regulator compare
Atu3038 +0.5 3.7 dipeptide ABC transporter ATPase compare
Atu3044 +0.5 2.4 asparaginase compare
Atu0545 +0.5 3.9 flagella associated protein compare
Atu4860 +0.5 2.9 hypothetical protein compare
Atu3120 +0.5 0.8 hypothetical protein compare
Atu4857 +0.5 3.6 mobilization protein C compare
Atu4858 +0.5 4.1 virulence virD4-like protein compare
Atu3313 +0.5 2.0 hypothetical protein compare
Atu2462 +0.5 1.5 hypothetical protein compare
Atu2786 +0.5 1.5 hypothetical protein compare
Atu3042 +0.5 3.4 hypothetical protein compare
Atu8191 +0.5 0.9 hypothetical protein compare
Atu1606 +0.5 2.3 methionine aminopeptidase compare
Atu3634 +0.5 2.3 penicillin-binding protein dacf precursor compare
Atu0687 +0.5 2.0 hypothetical protein compare
Atu3052 +0.4 2.1 MarR family transcriptional regulator compare
Atu5164 +0.4 0.5 type IV secretion protein AvhB3 compare
Atu1642 +0.4 1.4 hypothetical protein compare
Atu0824 +0.4 0.9 hypothetical protein compare
Atu2286 +0.4 0.8 hypothetical protein compare
Atu8057 +0.4 2.2 hypothetical protein compare
Atu0673 +0.4 2.9 hypothetical protein compare
Atu2335 +0.4 1.3 hypothetical protein compare
Atu1470 +0.4 0.8 Camphor resistance protein compare
Atu3775 +0.4 0.9 hypothetical protein compare
Atu1125 +0.4 1.6 ABC transporter, membrane spanning protein compare
Atu2258 +0.4 1.7 acetyltransferase compare
Atu0369 +0.4 1.4 hypothetical protein compare
Atu4093 +0.4 1.8 hypothetical protein compare
Atu2793 +0.4 1.6 cobyrinic acid a,c-diamide synthase compare
Atu8158 +0.4 1.0 hypothetical protein compare
Atu4852 +0.4 2.4 hypothetical protein compare
Atu1694 +0.4 2.0 hypothetical protein compare
Atu1237 +0.4 2.6 glycosyl transferase compare
Atu8022 +0.4 2.0 hypothetical protein compare
Atu2156 +0.4 2.2 hypothetical protein compare
Atu3523 +0.4 1.9 polysaccharide biosynthesis-like protein compare
Atu4859 +0.4 2.6 hypothetical protein compare
Atu1871 +0.4 1.8 glutathione S-transferase compare
Atu0013 +0.4 2.4 NAD(P)H-flavin oxidoreductase compare
Atu3041 +0.4 3.1 dipeptide ABC transporter substrate-binding protein compare
Atu3654 +0.4 2.7 hypothetical protein compare
Atu0983 +0.4 1.3 hypothetical protein compare
Atu2794 +0.4 1.0 uroporphyrin-III C-methyltransferase compare
Atu1098 +0.4 1.8 hypothetical protein compare
Atu2259 +0.4 1.4 MFS permease compare
Atu3039 +0.4 3.0 hydantoinase beta subunit-like protein compare
Atu1344 +0.4 0.8 hypothetical protein compare
Atu4630 +0.4 1.9 hypothetical protein compare
Atu2351 +0.4 1.9 hypothetical protein compare
Atu5481 +0.4 2.2 ABC transporter membrane spanning protein compare
Atu1229 +0.4 1.5 hypothetical protein compare
Atu2325 +0.4 1.0 hypothetical protein compare
Atu3037 +0.4 2.9 dipeptide ABC transporter permease compare
Atu1311 +0.4 1.8 acetyltransferase compare
Atu3047 +0.4 2.9 oligopeptide ABC transporter permease compare
Atu3593 +0.4 2.6 hypothetical protein compare
Atu6098 +0.4 0.3 transcriptional regulator, HTH family compare
Atu0886 +0.4 0.6 hypothetical protein compare
Atu1628 +0.4 1.2 hypothetical protein compare
Atu1880 +0.4 1.4 ABC transporter, membrane spanning protein (amino acid) compare
Atu4214 +0.4 1.8 cold shock protein compare
Atu4873 +0.4 2.6 TetR family transcriptional regulator compare
Atu2110 +0.4 2.0 sarcosine oxidase compare
Atu0781 +0.4 1.3 hypothetical protein compare
Atu1466 +0.4 0.8 hypothetical protein compare
Atu2375 +0.4 2.6 UDP-hexose transferase compare
Atu0189 +0.4 1.2 ABC transporter, membrane spanning protein (peptide) compare
Atu2564 +0.4 1.8 molybdenum-binding transcriptional repressor compare
Atu8053 +0.4 1.6 hypothetical protein compare
Atu1223 +0.4 0.8 hypothetical protein compare
Atu1853 +0.4 1.7 hypothetical protein compare
Atu8017 +0.4 1.9 hypothetical protein compare
Atu2571 +0.4 2.6 acyl carrier protein, putative compare
Atu3387 +0.3 1.6 sigma factor compare
Atu1469 +0.3 1.3 hypothetical protein compare
Atu4380 +0.3 2.2 Crp family transcriptional regulator compare
Atu0048 +0.3 2.5 hypothetical protein compare
Atu3036 +0.3 2.0 dipeptide ABC transporter permease compare
Atu5060 +0.3 2.4 ABC transporter membrane spanning protein (glycerol-3-phosphate) compare
Atu0907 +0.3 1.5 Phosphinothricin acetyltransferase compare
Atu1031 +0.3 0.8 hypothetical protein compare
Atu2431 +0.3 2.2 hypothetical protein compare
Atu4187 +0.3 0.8 tRNA-Met compare
Atu3106 +0.3 1.7 sugar ABC transporter substrate-binding protein compare
Atu3287 +0.3 1.3 thiamine biosynthesis associated protein compare
Atu0948 +0.3 1.6 hypothetical protein compare
Atu4832 +0.3 2.3 hypothetical protein compare
Atu0748 +0.3 2.3 deacetylase compare
Atu4792 +0.3 0.9 hypothetical protein compare
Atu3609 +0.3 1.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu8082 +0.3 0.8 hypothetical protein compare
Atu2284 +0.3 2.1 hypothetical protein compare
Atu5501 +0.3 0.8 hypothetical protein compare
Atu0756 +0.3 1.0 phosphoglycerate mutase compare
Atu5106 +0.3 0.9 DNA binding protein compare
Atu3862 +0.3 1.8 hypothetical protein compare
Atu1734 +0.3 1.0 hypothetical protein compare
Atu4855 +0.3 2.9 conjugation protein compare
Atu3124 +0.3 1.7 hypothetical protein compare
Atu3048 +0.3 2.3 oligopeptide ABC transporter permease compare
Atu4718 +0.3 1.8 GntR family transcriptional regulator compare
Atu3468 +0.3 0.4 hypothetical protein compare
Atu4411 +0.3 1.5 LysR family transcriptional regulator compare
Atu1354 +0.3 0.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3152 +0.3 1.6 AraC family transcriptional regulator compare
Atu0513 +0.3 1.6 hypothetical protein compare
Atu1260 +0.3 0.7 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) in Agrobacterium fabrum C58

For carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) across organisms