Experiment set14IT010 for Agrobacterium fabrum C58

Compare to:

Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) carbon source

200 most detrimental genes:

  gene name fitness t score description  
Atu4897 +2.7 10.4 hypothetical protein compare
Atu4896 +2.3 7.7 acetyltransferase compare
Atu3001 +2.1 12.6 hypothetical protein compare
Atu4893 +1.9 10.9 hypothetical protein compare
Atu4894 +1.9 14.0 transposase compare
Atu3006 +1.9 11.3 hypothetical protein compare
Atu3008 +1.8 4.3 hypothetical protein compare
Atu4884 +1.6 10.5 hypothetical protein compare
Atu4892 +1.6 13.7 hypothetical protein compare
Atu3005 +1.5 4.7 hypothetical protein compare
Atu3011 +1.5 5.5 ArsR family transcriptional regulator compare
Atu3010 +1.4 9.9 hypothetical protein compare
Atu4890 +1.4 5.7 IS426 transposase compare
Atu3009 +1.4 3.1 exopolysaccharide production protein compare
Atu4888 +1.4 7.6 hypothetical protein compare
Atu3014 +1.4 5.8 hypothetical protein compare
Atu3012 +1.4 2.3 hypothetical protein compare
Atu3013 +1.2 6.8 hypothetical protein compare
Atu3015 +1.2 7.7 hypothetical protein compare
Atu3018 +1.1 4.6 hypothetical protein compare
Atu8054 +1.1 1.5 hypothetical protein compare
Atu8202 +1.1 6.5 hypothetical protein compare
Atu3019 +1.1 6.5 hypothetical protein compare
Atu4889 +1.1 5.1 hypothetical protein compare
Atu4881 +1.0 6.5 hypothetical protein compare
Atu4887 +1.0 7.4 hypothetical protein compare
Atu3016 +1.0 5.6 phosphoglyceromutase compare
Atu3021 +1.0 6.7 sugar ABC transporter ATPase compare
Atu4880 +1.0 6.9 AraC family transcriptional regulator compare
Atu4882 +1.0 4.5 hypothetical protein compare
Atu3461 +0.9 2.3 GntR family transcriptional regulator compare
Atu4879 +0.9 5.0 hypothetical protein compare
Atu3020 +0.8 6.1 GntR family transcriptional regulator compare
Atu3022 +0.8 6.3 sugar ABC transporter permease compare
Atu2157 +0.8 4.0 tyrosine/serine protein phosphatase compare
Atu4878 +0.8 4.0 hypothetical protein compare
Atu3023 +0.8 5.8 sugar ABC transporter permease compare
Atu3030 +0.8 2.6 hypothetical protein compare
Atu8161 +0.8 1.9 hypothetical protein compare
Atu2368 +0.8 1.7 hypothetical protein compare
Atu4877 +0.7 5.7 short-chain dehydrogenase compare
Atu0912 +0.7 1.2 Na+/H+ antiporter compare
Atu4876 +0.7 5.4 oxidoreductase compare
Atu3024 +0.7 5.3 sugar ABC transporter permease compare
Atu8093 +0.7 3.7 hypothetical protein compare
Atu3026 +0.7 3.7 short chain dehydrogenase compare
Atu1019 +0.6 3.3 hypothetical protein compare
Atu5164 +0.6 0.8 type IV secretion protein AvhB3 compare
Atu4874 +0.6 4.6 hypothetical protein compare
Atu2378 +0.6 2.6 hypothetical protein compare
Atu4867 +0.6 4.8 hypothetical protein compare
Atu6189 +0.6 1.2 protein secretion chaperone compare
Atu4864 +0.6 3.2 MarR family transcriptional regulator compare
Atu4053 +0.6 1.6 succinoglycan biosynthesis protein compare
Atu4869 +0.6 2.8 hypothetical protein compare
Atu3025 +0.6 5.3 oligo alginate lyase compare
Atu3017 +0.6 1.4 phosphoglyceromutase compare
Atu4870 +0.6 4.4 NADP-dependent quinone oxidoreductase compare
Atu5034 +0.6 1.0 hypothetical protein compare
Atu8041 +0.6 1.7 hypothetical protein compare
Atu3029 +0.5 3.6 glucarate dehydratase compare
Atu1225 +0.5 0.9 hypothetical protein compare
Atu2344 +0.5 1.8 lactoylglutathione lyase compare
Atu3031 +0.5 1.3 hypothetical protein compare
Atu2067 +0.5 0.8 hypothetical protein compare
Atu3032 +0.5 2.0 hypothetical protein compare
Atu3027 +0.5 3.9 dehydrogenase compare
Atu2805 +0.5 2.5 cobalamin synthesis protein compare
Atu1884 +0.5 3.1 ABC transporter, substrate binding protein (aliphatic sulfonate) compare
Atu1734 +0.5 1.7 hypothetical protein compare
Atu2354 +0.5 2.2 transcriptional regulator, MarR family compare
Atu0723 +0.5 1.5 FAD dependent oxidoreductase compare
Atu4407 +0.5 1.9 periplasmic nitrate reductase, NapD protein compare
Atu8145 +0.5 1.6 hypothetical protein compare
Atu2164 +0.5 2.5 hypothetical protein compare
Atu2163 +0.5 0.9 hypothetical protein compare
Atu4875 +0.5 2.5 hypothetical protein compare
Atu8188 +0.5 3.0 hypothetical protein compare
Atu0941 +0.5 0.8 hypothetical protein compare
Atu0026 +0.5 0.7 hypothetical protein compare
Atu2526 +0.5 2.6 hypothetical protein compare
Atu4868 +0.5 3.6 oxidoreductase compare
Atu4872 +0.5 3.3 LysR family transcriptional regulator compare
Atu1836 +0.4 1.0 hypothetical protein compare
Atu0874 +0.4 2.3 acetyltransferase compare
Atu1628 +0.4 1.4 hypothetical protein compare
Atu0746 +0.4 2.1 hypothetical protein compare
Atu5158 +0.4 2.4 hypothetical protein compare
Atu4857 +0.4 3.3 mobilization protein C compare
Atu2464 +0.4 1.5 formyltetrahydrofolate deformylase compare
Atu5501 +0.4 1.2 hypothetical protein compare
Atu2140 +0.4 1.4 hypothetical protein compare
Atu0687 +0.4 1.2 hypothetical protein compare
Atu0382 +0.4 1.7 hypothetical protein compare
Atu1503 +0.4 0.8 hypothetical protein compare
Atu1240 +0.4 2.9 hypothetical protein compare
Atu3036 +0.4 2.7 dipeptide ABC transporter permease compare
Atu0680 +0.4 2.5 hypothetical protein compare
Atu4866 +0.4 2.6 hypothetical protein compare
Atu4861 +0.4 3.1 IS21 family transposase compare
Atu3523 +0.4 2.5 polysaccharide biosynthesis-like protein compare
Atu2794 +0.4 1.8 uroporphyrin-III C-methyltransferase compare
Atu4865 +0.4 3.0 oxidoreductase compare
Atu3037 +0.4 2.9 dipeptide ABC transporter permease compare
Atu2375 +0.4 2.3 UDP-hexose transferase compare
Atu0530 +0.4 2.6 UDP-galactose 4-epimerase compare
Atu3035 +0.4 3.4 two component response regulator compare
Atu0890 +0.4 2.4 hypothetical protein compare
Atu1637 +0.4 1.6 hypothetical protein compare
Atu3175 +0.4 1.7 hypothetical protein compare
Atu3644 +0.4 1.3 hypothetical protein compare
Atu1591 +0.4 1.8 hypothetical protein compare
Atu1559 +0.4 1.6 hypothetical protein compare
Atu5088 +0.4 1.3 hypothetical protein compare
Atu1989 +0.4 2.1 two component response regulator compare
Atu2293 +0.4 1.0 hypothetical protein compare
Atu1325 +0.4 1.1 acetyltransferase compare
Atu4363 +0.4 1.9 hypothetical protein compare
Atu0280 +0.4 1.1 hypothetical protein compare
Atu2113 +0.4 0.9 N-acetylmuramoyl-L-alanine amidase compare
Atu1110 +0.4 1.3 cytosol aminopeptidase compare
Atu3045 +0.4 2.2 hypothetical protein compare
Atu0888 +0.4 1.9 transcriptional regulator, MerR family compare
Atu0211 +0.4 2.4 hypothetical protein compare
Atu0435 +0.4 1.1 tRNA-Gly compare
Atu3034 +0.4 1.6 ROK family transcriptional regulator compare
Atu3120 +0.4 0.5 hypothetical protein compare
Atu3183 +0.4 0.5 hypothetical protein compare
Atu4635 +0.4 1.8 hypothetical protein compare
Atu1235 +0.4 2.7 hypothetical protein compare
Atu2565 +0.4 2.8 hypothetical protein compare
Atu2022 +0.3 2.5 NADP-dependent alcohol dehydrogenase compare
Atu3460 +0.3 2.0 RhtB family transporter compare
Atu1219 +0.3 0.6 hypothetical protein compare
Atu4406 +0.3 1.2 periplasmic nitrate reductase, ferredoxin-like protein compare
Atu0498 +0.3 2.3 hypothetical protein compare
Atu4862 +0.3 2.7 IS21 family transposase compare
Atu4854 +0.3 1.4 hypothetical protein compare
Atu3853 +0.3 2.2 hypothetical protein compare
Atu0201 +0.3 1.0 hypothetical protein compare
Atu3289 +0.3 1.6 thiamine-phosphate pyrophosphorylase compare
Atu3926 +0.3 1.4 translation initiation inhibitor compare
Atu0772 +0.3 2.4 hypothetical protein compare
Atu3965 +0.3 2.6 oxidoreductase compare
Atu5010 +0.3 1.2 hypothetical protein compare
Atu3721 +0.3 0.9 hypothetical protein compare
Atu1236 +0.3 2.6 polysaccharide biosynthesis glycosyltransferase compare
Atu3126 +0.3 1.8 hypothetical protein compare
Atu8036 +0.3 1.4 protein YBGT-like protein compare
Atu4592 +0.3 1.9 hypothetical protein compare
Atu0566 +0.3 1.0 hypothetical protein compare
Atu0545 +0.3 2.8 flagella associated protein compare
Atu5052 +0.3 1.6 small heat shock protein compare
Atu3777 +0.3 2.3 hypothetical protein compare
Atu2334 +0.3 2.5 hypothetical protein compare
Atu5152 +0.3 0.9 hypothetical protein compare
Atu1858 +0.3 1.4 hypothetical protein compare
Atu1049 +0.3 1.6 hypothetical protein compare
Atu3619 +0.3 1.3 hypothetical protein compare
Atu1775 +0.3 1.5 polyketide biosynthesis associated protein compare
Atu3951 +0.3 2.2 LysR family transcriptional regulator compare
Atu2788 +0.3 2.3 citrate lyase, beta subunit compare
Atu0294 +0.3 2.6 undecaprenyl pyrophosphate phosphatase, possible bacitracin resistance protein compare
Atu2399 +0.3 1.5 hypothetical protein compare
Atu3208 +0.3 1.7 malate dehydrogenase compare
Atu3567 +0.3 1.4 hypothetical protein compare
Atu1835 +0.3 2.0 hypothetical protein compare
Atu1176 +0.3 1.0 hypothetical protein compare
Atu0955 +0.3 1.5 hypothetical protein compare
Atu3313 +0.3 1.1 hypothetical protein compare
Atu4241 +0.3 2.0 aldehyde dehydrogenase compare
Atu6131 +0.3 1.9 TraR Antiactivator compare
Atu2299 +0.3 1.4 hypothetical protein compare
Atu0386 +0.3 0.8 hypothetical protein compare
Atu0165 +0.3 1.2 hypothetical protein compare
Atu2313 +0.3 1.8 hypothetical protein compare
Atu4159 +0.3 1.0 AsnC family transcriptional regulator compare
Atu1896 +0.3 1.5 hypothetical protein compare
Atu2605 +0.3 1.2 hypothetical protein compare
Atu4143 +0.3 1.8 hypothetical protein compare
Atu8010 +0.3 1.9 hypothetical protein compare
Atu1253 +0.3 1.7 hypothetical protein compare
Atu3336 +0.3 1.3 hypothetical protein compare
Atu3860 +0.3 2.7 hypothetical protein compare
Atu3653 +0.3 1.6 hypothetical protein compare
Atu3040 +0.3 2.1 hypothetical protein compare
Atu2120 +0.3 1.4 O-methyltransferase compare
Atu1480 +0.3 1.3 hypothetical protein compare
Atu3632 +0.3 1.1 hypothetical protein compare
Atu0513 +0.3 2.0 hypothetical protein compare
Atu0740 +0.3 2.2 transcriptional regulator, AsnC family compare
Atu3048 +0.3 1.9 oligopeptide ABC transporter permease compare
Atu5485 +0.3 1.1 hypothetical protein compare
Atu0048 +0.3 2.2 hypothetical protein compare
Atu8039 +0.3 1.4 hypothetical protein compare
Atu4378 +0.3 2.0 hypothetical protein compare
Atu4756 +0.3 1.8 hypothetical protein compare
Atu3216 +0.3 1.8 oligopeptide ABC transporter ATPase compare
Atu1855 +0.3 1.8 MFS permease compare
Atu6036 +0.3 0.3 entry-exclusion protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in carbon source experiments

For carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) across organisms