Experiment set13IT073 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu4166 -4.5 -2.5 UDP-glucose 4-epimerase compare
Atu2684 -4.4 -2.8 hypothetical protein compare
Atu4616 -4.1 -2.7 dTDP-4-dehydrorhamnose reductase compare
Atu1030 -4.0 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0039 -3.8 -3.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu0184 -3.5 -3.4 glucokinase compare
Atu0041 -3.4 -2.8 glutamine amidotransferase compare
Atu4773 -3.2 -1.7 two component response regulator compare
Atu2728 -2.9 -3.4 beta (1-->2) glucan export ATP-binding protein compare
Atu2125 -2.7 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu6098 -2.6 -1.4 transcriptional regulator, HTH family compare
Atu0331 -2.4 -2.5 sigma-54 modulation protein compare
Atu1447 -2.3 -2.1 two component sensor kinase compare
Atu4317 -2.2 -2.5 TetR family transcriptional regulator compare
Atu3707 -2.2 -3.3 phosphoserine aminotransferase compare
Atu0141 -2.1 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu3908 -2.1 -8.9 GntR family transcriptional regulator compare
Atu1364 -2.1 -5.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3763 -2.0 -1.4 hypothetical protein compare
Atu0040 -2.0 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2183 -2.0 -8.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0050 -2.0 -5.8 two component response regulator compare
Atu0038 -1.9 -3.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1470 -1.9 -1.4 Camphor resistance protein compare
Atu2439 -1.9 -1.3 hypothetical protein compare
Atu3353 -1.9 -9.1 mannose-1-phosphate guanylyltransferase compare
Atu1679 -1.9 -2.9 peptidyl prolyl cis-trans isomerase compare
Atu4617 -1.8 -5.4 dTDP-D-glucose-4,6-dehydratase compare
Atu0971 -1.8 -3.3 two component sensor kinase compare
Atu0043 -1.8 -2.8 imidazoleglycerol-phosphate dehydratase compare
Atu2249 -1.7 -1.5 hypothetical protein compare
Atu3598 -1.7 -1.5 thiol:disulfide interchange protein compare
Atu1750 -1.7 -4.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu1566 -1.7 -1.5 hypothetical protein compare
Atu1810 -1.7 -1.3 hypothetical protein compare
Atu4618 -1.7 -7.3 dTDP-rhamnose-3,5-epimerase compare
Atu3311 -1.6 -10.0 phosphomannose isomerase compare
Atu0895 -1.6 -2.7 ABC transporter, substrate binding protein compare
Atu4613 -1.6 -7.9 glycosyltransferase compare
Atu4610 -1.6 -7.6 sugar nucleotide epimerase/dehydratase compare
Atu0225 -1.6 -1.2 hypothetical protein compare
Atu4686 -1.6 -3.1 hypothetical protein compare
Atu0051 -1.6 -4.1 two component sensor kinase compare
Atu0422 -1.5 -2.5 ABC transporter, membrane spanning protein compare
Atu0678 -1.5 -4.1 histidyl-tRNA synthetase compare
Atu0769 -1.5 -1.6 protoheme IX farnesyltransferase compare
Atu3712 -1.5 -2.1 hypothetical protein compare
Atu3469 -1.5 -2.4 phosphoglyceromutase compare
Atu1714 -1.5 -1.7 exonuclease III compare
Atu2662 -1.5 -1.7 acetyltransferase compare
Atu0679 -1.4 -4.2 ATP phosphoribosyltransferase compare
Atu5125 -1.4 -4.0 GntR family transcriptional regulator compare
Atu1904 -1.4 -2.8 transcriptional regulator compare
Atu4615 -1.4 -6.3 glucose-1-phosphate thymidylyltransferase compare
Atu2036 -1.4 -7.6 acetolactate synthase III, large subunit compare
Atu1327 -1.3 -2.7 NADH-ubiquinone oxidoreductase compare
Atu4614 -1.3 -3.6 glycosyltransferase compare
Atu0142 -1.3 -2.4 cytochrome o ubiquinol oxidase subunit II compare
Atu0030 -1.3 -1.7 phosphocarrier protein HPr compare
Atu1242 -1.3 -7.1 cytochrome oxidase assembly factor compare
Atu4148 -1.3 -5.5 UDP-glucuronic acid epimerase compare
Atu0153 -1.2 -3.8 transcriptional regulator, Fur family compare
Atu0099 -1.2 -6.2 prephenate dehydratase compare
Atu1446 -1.2 -2.0 two component response regulator compare
Atu1417 -1.2 -4.6 enoyl-CoA hydratase compare
Atu5470 -1.2 -1.8 hypothetical protein compare
Atu2522 -1.2 -7.2 agrobacterium chromosomal virulence protein B compare
Atu3706 -1.2 -4.1 D-3-phosphoglycerate dehydrogenase compare
Atu0677 -1.2 -2.6 hypothetical protein compare
Atu2379 -1.2 -4.6 phosphomannomutase compare
Atu3885 -1.2 -4.4 inositol monophosphatase compare
Atu2057 -1.2 -1.9 DNA helicase II compare
Atu1129 -1.2 -5.2 excinuclease ABC chain C compare
Atu1205 -1.2 -6.8 threonine dehydratase compare
Atu2831 -1.2 -3.8 glucose inhibited division protein A compare
Atu2790 -1.2 -1.4 3-isopropylmalate dehydratase, small subunit compare
Atu5160 -1.2 -3.9 transcriptional regulator protein compare
Atu0537 -1.2 -5.2 histidinol dehydrogenase compare
Atu1213 -1.1 -1.8 hypothetical protein compare
Atu0544 -1.1 -2.0 hypothetical protein compare
Atu1646 -1.1 -3.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu4711 -1.1 -5.7 two component sensor kinase compare
Atu4609 -1.1 -6.7 glycosyltransferase compare
Atu2464 -1.1 -2.5 formyltetrahydrofolate deformylase compare
Atu1645 -1.1 -4.0 ABC transporter, substrate binding protein compare
Atu2832 -1.1 -3.1 tRNA modification GTPase compare
Atu3609 -1.1 -4.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu4608 -1.1 -6.8 hypothetical protein compare
Atu0401 -1.0 -4.0 fructokinase compare
Atu1354 -1.0 -0.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2442 -1.0 -1.6 hypothetical protein compare
Atu1175 -1.0 -1.3 hypothetical protein compare
Atu3466 -1.0 -2.3 ArsR family transcriptional regulator compare
Atu4446 -1.0 -5.2 hypothetical protein compare
Atu1009 -1.0 -2.1 hypothetical protein compare
Atu1026 -1.0 -1.8 hypothetical protein compare
Atu3727 -1.0 -2.5 hypothetical protein compare
Atu0999 -1.0 -4.0 magnesium transport protein compare
Atu1739 -1.0 -2.6 permease compare
Atu4451 -1.0 -4.4 mannitol 2-dehydrogenase compare
Atu0687 -1.0 -1.5 hypothetical protein compare
Atu0086 -1.0 -0.8 ribosome-binding factor A compare
Atu1219 -1.0 -1.0 hypothetical protein compare
Atu1468 -1.0 -5.0 hypothetical protein compare
Atu0784 -1.0 -2.1 hypothetical protein compare
Atu1588 -1.0 -3.3 homoserine dehydrogenase compare
Atu1647 -1.0 -3.9 ABC transporter, membrane spanning protein compare
Atu2585 -1.0 -3.2 hypothetical protein compare
Atu2124 -1.0 -3.4 transcriptional regulator, ArsR family compare
Atu1163 -1.0 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2592 -0.9 -4.4 hypothetical protein compare
Atu0894 -0.9 -1.5 ABC transporter, membrane spanning protein compare
Atu3732 -0.9 -6.1 hemolysin compare
Atu6131 -0.9 -3.4 TraR Antiactivator compare
Atu1902 -0.9 -3.8 transketolase compare
Atu2052 -0.9 -3.1 hypothetical protein compare
Atu1705 -0.9 -2.6 SEC-independent protein translocase protein compare
Atu0876 -0.9 -1.5 superoxide dismutase compare
Atu2073 -0.9 -2.7 membrane protein compare
Atu1225 -0.9 -0.8 hypothetical protein compare
Atu2335 -0.9 -1.3 hypothetical protein compare
Atu4346 -0.9 -3.8 hypothetical protein compare
Atu3754 -0.9 -3.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1028 -0.9 -1.8 hypothetical protein compare
Atu2583 -0.9 -6.0 glycosyltransferase compare
Atu3429 -0.9 -1.1 hypothetical protein compare
Atu8156 -0.9 -3.1 hypothetical protein compare
Atu4274 -0.9 -3.1 hypothetical protein compare
Atu2709 -0.9 -6.5 3-isopropylmalate dehydratase, large subunit compare
Atu3698 -0.8 -2.7 thioredoxin compare
Atu0499 -0.8 -4.4 hypothetical protein compare
Atu1644 -0.8 -2.3 hypothetical protein compare
Atu1513 -0.8 -2.6 ABC excinuclease subunit A compare
Atu3544 -0.8 -5.0 arsenical pump membrane protein compare
Atu2577 -0.8 -6.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0647 -0.8 -3.1 phosphoribosylamine--glycine ligase compare
Atu3045 -0.8 -2.2 hypothetical protein compare
Atu2555 -0.8 -1.9 L-lysine 2,3-aminomutase compare
Atu2824 -0.8 -2.0 hypothetical protein compare
Atu2591 -0.8 -4.5 glucosyltransferase compare
Atu0768 -0.8 -5.0 cytochrome-c oxidase chain I compare
Atu1466 -0.8 -1.4 hypothetical protein compare
Atu1077 -0.8 -2.3 DNA repair protein compare
Atu2289 -0.8 -5.8 anthranilate synthase component I and II compare
Atu0893 -0.8 -2.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu1620 -0.8 -5.3 triosephosphate isomerase compare
Atu1891 -0.8 -2.2 cobalamin biosynthesis protein compare
Atu1619 -0.8 -1.9 protein-export membrane protein SECG compare
Atu0907 -0.8 -1.9 Phosphinothricin acetyltransferase compare
Atu2554 -0.8 -1.1 lysyl-tRNA synthetase compare
Atu3144 -0.8 -3.6 GntR family transcriptional regulator compare
Atu2040 -0.8 -2.7 phosphoserine phosphatase compare
Atu2298 -0.8 -3.0 hypothetical protein compare
Atu3279 -0.8 -3.3 methanesulfonate sulfonatase compare
Atu0601 -0.8 -3.3 oxidoreductase compare
Atu4149 -0.8 -5.1 UDP-glucose 6-dehydrogenase compare
Atu0101 -0.8 -2.8 cytochrome c compare
Atu8018 -0.8 -0.8 hypothetical protein compare
Atu0978 -0.8 -3.4 two component response regulator compare
Atu1103 -0.7 -1.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1302 -0.7 -1.6 hypothetical protein compare
Atu8168 -0.7 -1.4 hypothetical protein compare
Atu3744 -0.7 -4.4 ABC transporter permease compare
Atu1850 -0.7 -2.1 phosphoribosylformylglycinamidine synthetase II compare
Atu4050 -0.7 -1.8 UTP-glucose-1-phosphate uridylyltransferase compare
Atu4502 -0.7 -2.7 cobalamin synthesis protein compare
Atu2791 -0.7 -2.9 3-isopropylmalate dehydrogenase compare
Atu0399 -0.7 -2.6 dihydroorotase compare
Atu2264 -0.7 -3.5 2-isopropylmalate synthase compare
Atu2590 -0.7 -3.9 hypothetical protein compare
Atu0400 -0.7 -1.6 orotate phosphoribosyltransferase compare
Atu1874 -0.7 -1.5 RecA protein compare
Atu0029 -0.7 -3.3 S-adenosylhomocysteine hydrolase compare
Atu3834 -0.7 -2.9 hypothetical protein compare
Atu1469 -0.7 -1.5 hypothetical protein compare
Atu0636 -0.7 -3.5 hypothetical protein compare
Atu8118 -0.7 -3.5 putative universal stress protein compare
Atu1688 -0.7 -2.5 indole-3-glycerol-phosphate synthase compare
Atu0354 -0.7 -0.9 ferric uptake regulator compare
Atu2606 -0.7 -3.0 transcriptional regulator, GntR family compare
Atu8025 -0.7 -0.8 hypothetical protein compare
Atu3219 -0.7 -3.8 dihydroxy-acid dehydratase compare
Atu3413 -0.7 -1.6 AsnC family transcriptional regulator compare
Atu3692 -0.7 -2.9 sigma factor compare
Atu0073 -0.7 -3.4 recF-like protein compare
Atu3485 -0.7 -4.3 short chain dehydrogenase compare
Atu8046 -0.7 -1.4 hypothetical protein compare
Atu0361 -0.7 -1.9 transcriptional regulator compare
Atu0640 -0.7 -2.2 hypothetical protein compare
Atu3075 -0.7 -3.2 TetR family transcriptional regulator compare
Atu4161 -0.7 -1.1 hypothetical protein compare
Atu0062 -0.7 -3.0 transcriptional regulator, ROK family compare
Atu0723 -0.7 -0.8 FAD dependent oxidoreductase compare
Atu3162 -0.7 -3.4 LacI family transcriptional regulator compare
Atu3569 -0.7 -2.7 hypothetical protein compare
Atu0843 -0.7 -4.9 P type cation (metal) transporter, ATPase component compare
Atu1518 -0.7 -1.6 transcriptional regulator, Fur family compare
Atu0017 -0.7 -1.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1062 -0.7 -1.0 phosphatidylserine synthase compare
Atu1021 -0.7 -1.4 outer membrane protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms