Experiment set13IT072 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu0050 -5.3 -3.7 two component response regulator compare
Atu0051 -4.6 -3.2 two component sensor kinase compare
Atu3544 -4.5 -13.0 arsenical pump membrane protein compare
Atu3598 -4.1 -2.7 thiol:disulfide interchange protein compare
Atu0039 -3.8 -3.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu1242 -3.7 -9.4 cytochrome oxidase assembly factor compare
Atu2274 -3.6 -10.1 cation efflux system protein compare
Atu0030 -3.6 -2.4 phosphocarrier protein HPr compare
Atu2183 -3.4 -9.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0141 -3.4 -2.0 cytochrome O ubiquinol oxidase subunit I compare
Atu0142 -3.3 -4.5 cytochrome o ubiquinol oxidase subunit II compare
Atu3353 -3.2 -10.5 mannose-1-phosphate guanylyltransferase compare
Atu0769 -3.2 -2.1 protoheme IX farnesyltransferase compare
Atu2522 -2.9 -12.2 agrobacterium chromosomal virulence protein B compare
Atu1470 -2.8 -1.5 Camphor resistance protein compare
Atu1468 -2.8 -10.9 hypothetical protein compare
Atu0043 -2.7 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu2073 -2.6 -5.4 membrane protein compare
Atu3311 -2.6 -10.2 phosphomannose isomerase compare
Atu0184 -2.6 -4.2 glucokinase compare
Atu4618 -2.5 -9.7 dTDP-rhamnose-3,5-epimerase compare
Atu0971 -2.5 -2.4 two component sensor kinase compare
Atu4614 -2.5 -7.1 glycosyltransferase compare
Atu2728 -2.4 -3.6 beta (1-->2) glucan export ATP-binding protein compare
Atu0678 -2.4 -7.9 histidyl-tRNA synthetase compare
Atu4610 -2.4 -10.5 sugar nucleotide epimerase/dehydratase compare
Atu4615 -2.4 -9.5 glucose-1-phosphate thymidylyltransferase compare
Atu0101 -2.4 -4.1 cytochrome c compare
Atu1810 -2.4 -1.2 hypothetical protein compare
Atu0679 -2.4 -7.4 ATP phosphoribosyltransferase compare
Atu3183 -2.3 -1.2 hypothetical protein compare
Atu0143 -2.3 -12.6 MFS permease compare
Atu1503 -2.3 -1.7 hypothetical protein compare
Atu0723 -2.3 -1.6 FAD dependent oxidoreductase compare
Atu3908 -2.3 -10.2 GntR family transcriptional regulator compare
Atu0041 -2.2 -3.2 glutamine amidotransferase compare
Atu1566 -2.2 -1.5 hypothetical protein compare
Atu4323 -2.1 -6.3 ribitol 2-dehydrogenase compare
Atu3707 -2.1 -3.1 phosphoserine aminotransferase compare
Atu0977 -2.1 -4.4 serine protease DO-like protease compare
Atu4166 -2.1 -2.6 UDP-glucose 4-epimerase compare
Atu0040 -2.1 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2125 -2.0 -2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu0138 -2.0 -6.1 surfeit 1 compare
Atu1030 -2.0 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1327 -2.0 -3.4 NADH-ubiquinone oxidoreductase compare
Atu8056 -2.0 -1.7 hypothetical protein compare
Atu0361 -2.0 -2.8 transcriptional regulator compare
Atu0999 -2.0 -5.5 magnesium transport protein compare
Atu2555 -1.9 -5.6 L-lysine 2,3-aminomutase compare
Atu4613 -1.9 -10.2 glycosyltransferase compare
Atu6098 -1.9 -1.2 transcriptional regulator, HTH family compare
Atu4617 -1.9 -6.9 dTDP-D-glucose-4,6-dehydratase compare
Atu1364 -1.9 -6.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0038 -1.8 -5.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2439 -1.8 -1.9 hypothetical protein compare
Atu4072 -1.8 -1.8 nodulation protein N compare
Atu0978 -1.8 -7.3 two component response regulator compare
Atu2379 -1.8 -8.5 phosphomannomutase compare
Atu1062 -1.8 -1.9 phosphatidylserine synthase compare
Atu3730 -1.7 -2.2 hypothetical protein compare
Atu3706 -1.7 -6.3 D-3-phosphoglycerate dehydrogenase compare
Atu2554 -1.7 -2.8 lysyl-tRNA synthetase compare
Atu4317 -1.6 -2.2 TetR family transcriptional regulator compare
Atu3744 -1.6 -7.3 ABC transporter permease compare
Atu1902 -1.6 -6.3 transketolase compare
Atu2831 -1.6 -4.4 glucose inhibited division protein A compare
Atu1354 -1.6 -1.2 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0809 -1.6 -1.7 hypothetical protein compare
Atu0537 -1.6 -5.0 histidinol dehydrogenase compare
Atu2577 -1.6 -11.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu2582 -1.5 -6.6 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0895 -1.5 -3.0 ABC transporter, substrate binding protein compare
Atu1646 -1.5 -4.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1223 -1.5 -1.6 hypothetical protein compare
Atu2052 -1.5 -4.8 hypothetical protein compare
Atu1739 -1.5 -3.9 permease compare
Atu0768 -1.5 -8.8 cytochrome-c oxidase chain I compare
Atu0331 -1.5 -2.0 sigma-54 modulation protein compare
Atu2832 -1.5 -3.3 tRNA modification GTPase compare
Atu1904 -1.5 -1.9 transcriptional regulator compare
Atu3727 -1.4 -3.9 hypothetical protein compare
Atu4223 -1.4 -2.1 sarcosine oxidase delta subunit compare
Atu0017 -1.4 -3.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2583 -1.4 -9.3 glycosyltransferase compare
Atu2521 -1.4 -8.9 Protein regulated by acid pH compare
Atu2585 -1.4 -5.8 hypothetical protein compare
Atu0319 -1.4 -1.3 ubiquinone biosynthesis protein compare
Atu0767 -1.3 -4.1 cytochrome c oxidase subunit II compare
Atu4148 -1.3 -5.7 UDP-glucuronic acid epimerase compare
Atu2683 -1.3 -1.8 hypothetical protein compare
Atu4446 -1.3 -6.0 hypothetical protein compare
Atu1219 -1.3 -1.2 hypothetical protein compare
Atu1359 -1.3 -1.1 dnaK deletion suppressor protein compare
Atu1750 -1.3 -4.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu1645 -1.3 -6.5 ABC transporter, substrate binding protein compare
Atu0876 -1.3 -1.3 superoxide dismutase compare
Atu4149 -1.3 -7.7 UDP-glucose 6-dehydrogenase compare
Atu0153 -1.3 -3.4 transcriptional regulator, Fur family compare
Atu4576 -1.3 -6.5 ROK family transcriptional regulator compare
Atu3885 -1.3 -6.8 inositol monophosphatase compare
Atu1647 -1.3 -4.5 ABC transporter, membrane spanning protein compare
Atu1028 -1.2 -2.2 hypothetical protein compare
Atu1644 -1.2 -1.7 hypothetical protein compare
Atu1767 -1.2 -7.0 transcriptional regulator, AraC family compare
Atu1679 -1.2 -2.4 peptidyl prolyl cis-trans isomerase compare
Atu3763 -1.2 -1.1 hypothetical protein compare
Atu2584 -1.2 -4.7 hypothetical protein compare
Atu0894 -1.2 -2.2 ABC transporter, membrane spanning protein compare
Atu2592 -1.2 -3.9 hypothetical protein compare
Atu0031 -1.2 -1.2 PTS system, IIA component compare
Atu3469 -1.2 -1.8 phosphoglyceromutase compare
Atu0979 -1.2 -4.7 two component sensor kinase compare
Atu2590 -1.2 -6.2 hypothetical protein compare
Atu0687 -1.2 -2.1 hypothetical protein compare
Atu3732 -1.2 -3.7 hemolysin compare
Atu8036 -1.1 -1.6 protein YBGT-like protein compare
Atu3182 -1.1 -1.2 hypothetical protein compare
Atu2057 -1.1 -2.1 DNA helicase II compare
Atu2406 -1.1 -2.4 hypothetical protein compare
Atu4502 -1.1 -5.4 cobalamin synthesis protein compare
Atu2591 -1.1 -5.5 glucosyltransferase compare
Atu1889 -1.1 -2.0 diacylglycerol kinase compare
Atu0357 -1.1 -6.2 phosphate starvation inducible protein compare
Atu0703 -1.1 -2.0 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2464 -1.1 -2.3 formyltetrahydrofolate deformylase compare
Atu0272 -1.1 -3.4 transcriptional regulator, MarR family compare
Atu8046 -1.1 -3.0 hypothetical protein compare
Atu0269 -1.1 -3.4 exodeoxyribonuclease VII large subunit compare
Atu1076 -1.1 -2.2 colicin V production protein compare
Atu3270 -1.1 -1.6 hypothetical protein compare
Atu3391 -1.1 -5.9 ABC transporter substrate-binding protein compare
Atu2821 -1.0 -3.0 transcriptional regulator, GntR family compare
Atu1026 -1.0 -1.8 hypothetical protein compare
Atu2684 -1.0 -1.4 hypothetical protein compare
Atu3739 -1.0 -1.8 phosphoglycerate kinase compare
Atu4711 -1.0 -3.7 two component sensor kinase compare
Atu1874 -1.0 -2.0 RecA protein compare
Atu0099 -1.0 -4.3 prephenate dehydratase compare
Atu5496 -1.0 -5.6 TetR family transcriptional regulator compare
Atu0843 -1.0 -7.2 P type cation (metal) transporter, ATPase component compare
Atu1677 -1.0 -3.5 queuine tRNA-ribosyltransferase compare
Atu3712 -1.0 -1.5 hypothetical protein compare
Atu4538 -1.0 -5.4 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu1714 -1.0 -1.3 exonuclease III compare
Atu0225 -1.0 -0.9 hypothetical protein compare
Atu0784 -1.0 -2.5 hypothetical protein compare
Atu4608 -1.0 -6.1 hypothetical protein compare
Atu2040 -1.0 -3.4 phosphoserine phosphatase compare
Atu1589 -1.0 -4.3 aminotransferase, class I compare
Atu2289 -1.0 -6.1 anthranilate synthase component I and II compare
Atu0230 -0.9 -1.7 hypothetical protein compare
Atu1838 -0.9 -2.7 ABC transporter, substrate binding protein (amino acid) compare
Atu1467 -0.9 -1.7 hypothetical protein compare
Atu1619 -0.9 -1.9 protein-export membrane protein SECG compare
Atu1620 -0.9 -5.1 triosephosphate isomerase compare
Atu0434 -0.9 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4743 -0.9 -4.2 LacI family transcriptional regulator compare
Atu3012 -0.9 -1.2 hypothetical protein compare
Atu1588 -0.9 -4.4 homoserine dehydrogenase compare
Atu3389 -0.9 -4.7 iron ABC transporter permease compare
Atu3429 -0.9 -1.1 hypothetical protein compare
Atu4609 -0.9 -5.0 glycosyltransferase compare
Atu5470 -0.9 -1.9 hypothetical protein compare
Atu1308 -0.9 -2.1 aspartate carbamoyl transferase catalytic subunit compare
Atu1513 -0.9 -2.3 ABC excinuclease subunit A compare
Atu4205 -0.9 -4.0 TetR family transcriptional regulator compare
Atu2797 -0.9 -1.8 cobalamin biosynthesis protein compare
Atu0237 -0.9 -3.5 hypothetical protein compare
Atu1891 -0.9 -2.5 cobalamin biosynthesis protein compare
Atu3219 -0.9 -5.0 dihydroxy-acid dehydratase compare
Atu3667 -0.9 -2.0 aspartate alpha-decarboxylase compare
Atu1185 -0.9 -2.3 hypothetical protein compare
Atu0502 -0.9 -3.8 acetyl-CoA acetyltransferase compare
Atu3728 -0.9 -3.7 hypothetical protein compare
Atu1642 -0.9 -1.6 hypothetical protein compare
Atu2286 -0.9 -1.3 hypothetical protein compare
Atu4144 -0.8 -0.9 hypothetical protein compare
Atu3750 -0.8 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu8035 -0.8 -1.3 hypothetical protein compare
Atu2662 -0.8 -0.9 acetyltransferase compare
Atu3579 -0.8 -2.9 lactoylglutathione lyase compare
Atu4451 -0.8 -3.8 mannitol 2-dehydrogenase compare
Atu4232 -0.8 -3.7 GntR family transcriptional regulator compare
Atu3388 -0.8 -3.1 iron ABC transporter ATPase compare
Atu0499 -0.8 -4.5 hypothetical protein compare
Atu0601 -0.8 -4.5 oxidoreductase compare
Atu8018 -0.8 -0.8 hypothetical protein compare
Atu1175 -0.8 -1.1 hypothetical protein compare
Atu3327 -0.8 -2.2 succinoglycan exopolysaccharide synthesis protein compare
Atu4092 -0.8 -3.8 cytochrome d oxidase subunit II compare
Atu4055 -0.8 -4.1 endo-1,3-1,4-beta-glycanase compare
Atu2264 -0.8 -4.6 2-isopropylmalate synthase compare
Atu0565 -0.8 -2.3 hypothetical protein compare
Atu1447 -0.8 -1.3 two component sensor kinase compare
Atu0503 -0.8 -5.7 enoyl-CoA hydratase compare
Atu2193 -0.8 -0.7 hypothetical protein compare
Atu2617 -0.8 -2.3 chemotaxis protein compare
Atu8118 -0.8 -3.0 putative universal stress protein compare
Atu1592 -0.7 -1.8 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms