Experiment set13IT071 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu4317 -5.0 -4.2 TetR family transcriptional regulator compare
Atu4616 -4.1 -2.2 dTDP-4-dehydrorhamnose reductase compare
Atu6098 -4.1 -1.3 transcriptional regulator, HTH family compare
Atu1030 -4.0 -2.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2522 -3.8 -13.1 agrobacterium chromosomal virulence protein B compare
Atu0050 -3.8 -6.6 two component response regulator compare
Atu1242 -3.8 -11.1 cytochrome oxidase assembly factor compare
Atu0051 -3.7 -6.2 two component sensor kinase compare
Atu0030 -3.7 -2.0 phosphocarrier protein HPr compare
Atu0999 -3.6 -8.5 magnesium transport protein compare
Atu3544 -3.4 -11.4 arsenical pump membrane protein compare
Atu2728 -3.4 -2.3 beta (1-->2) glucan export ATP-binding protein compare
Atu0141 -3.4 -1.7 cytochrome O ubiquinol oxidase subunit I compare
Atu4144 -3.4 -1.5 hypothetical protein compare
Atu2183 -3.3 -8.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0769 -3.1 -1.9 protoheme IX farnesyltransferase compare
Atu0143 -3.1 -11.3 MFS permease compare
Atu0038 -3.1 -4.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1750 -3.0 -4.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu3707 -2.9 -3.9 phosphoserine aminotransferase compare
Atu4217 -2.9 -1.5 TetR family transcriptional regulator compare
Atu1359 -2.9 -1.3 dnaK deletion suppressor protein compare
Atu0040 -2.9 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4610 -2.9 -10.1 sugar nucleotide epimerase/dehydratase compare
Atu3468 -2.8 -0.9 hypothetical protein compare
Atu2073 -2.8 -4.3 membrane protein compare
Atu1470 -2.8 -1.2 Camphor resistance protein compare
Atu2052 -2.8 -5.6 hypothetical protein compare
Atu4617 -2.7 -8.1 dTDP-D-glucose-4,6-dehydratase compare
Atu4166 -2.7 -2.1 UDP-glucose 4-epimerase compare
Atu0101 -2.6 -5.8 cytochrome c compare
Atu3353 -2.6 -8.6 mannose-1-phosphate guanylyltransferase compare
Atu0142 -2.5 -3.3 cytochrome o ubiquinol oxidase subunit II compare
Atu0977 -2.5 -4.6 serine protease DO-like protease compare
Atu1646 -2.5 -6.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu0678 -2.4 -6.5 histidyl-tRNA synthetase compare
Atu4614 -2.4 -5.9 glycosyltransferase compare
Atu4618 -2.4 -9.7 dTDP-rhamnose-3,5-epimerase compare
Atu1364 -2.4 -7.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4613 -2.4 -10.0 glycosyltransferase compare
Atu0138 -2.3 -8.6 surfeit 1 compare
Atu0784 -2.3 -3.3 hypothetical protein compare
Atu1645 -2.3 -6.9 ABC transporter, substrate binding protein compare
Atu3908 -2.2 -9.7 GntR family transcriptional regulator compare
Atu1566 -2.2 -1.3 hypothetical protein compare
Atu2274 -2.2 -5.3 cation efflux system protein compare
Atu2521 -2.1 -11.1 Protein regulated by acid pH compare
Atu3311 -2.1 -9.2 phosphomannose isomerase compare
Atu4323 -2.1 -6.9 ribitol 2-dehydrogenase compare
Atu3017 -2.1 -1.3 phosphoglyceromutase compare
Atu2368 -2.0 -1.5 hypothetical protein compare
Atu1062 -2.0 -1.7 phosphatidylserine synthase compare
Atu1647 -2.0 -6.1 ABC transporter, membrane spanning protein compare
Atu0755 -2.0 -2.6 hypothetical protein compare
Atu0319 -2.0 -1.3 ubiquinone biosynthesis protein compare
Atu4677 -2.0 -1.7 hypothetical protein compare
Atu3732 -1.9 -9.1 hemolysin compare
Atu0153 -1.9 -3.5 transcriptional regulator, Fur family compare
Atu0039 -1.8 -2.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu3730 -1.8 -1.9 hypothetical protein compare
Atu0636 -1.7 -5.8 hypothetical protein compare
Atu1838 -1.7 -2.8 ABC transporter, substrate binding protein (amino acid) compare
Atu2192 -1.7 -1.5 hypothetical protein compare
Atu0062 -1.7 -7.3 transcriptional regulator, ROK family compare
Atu2379 -1.7 -6.1 phosphomannomutase compare
Atu0272 -1.6 -3.7 transcriptional regulator, MarR family compare
Atu1685 -1.6 -1.1 hypothetical protein compare
Atu4148 -1.6 -4.5 UDP-glucuronic acid epimerase compare
Atu0331 -1.6 -3.3 sigma-54 modulation protein compare
Atu0041 -1.6 -2.1 glutamine amidotransferase compare
Atu4615 -1.6 -5.7 glucose-1-phosphate thymidylyltransferase compare
Atu0107 -1.6 -2.9 hypothetical protein compare
Atu8159 -1.6 -1.8 hypothetical protein compare
Atu0679 -1.6 -4.6 ATP phosphoribosyltransferase compare
Atu1149 -1.5 -1.5 adenylate cyclase compare
Atu0768 -1.5 -6.7 cytochrome-c oxidase chain I compare
Atu2554 -1.5 -2.3 lysyl-tRNA synthetase compare
Atu0971 -1.5 -3.0 two component sensor kinase compare
Atu2577 -1.5 -9.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu4773 -1.5 -1.4 two component response regulator compare
Atu3739 -1.5 -2.5 phosphoglycerate kinase compare
Atu8118 -1.5 -4.0 putative universal stress protein compare
Atu3469 -1.5 -2.0 phosphoglyceromutase compare
Atu4576 -1.4 -5.7 ROK family transcriptional regulator compare
Atu2193 -1.4 -0.9 hypothetical protein compare
Atu3763 -1.4 -1.1 hypothetical protein compare
Atu2057 -1.4 -1.7 DNA helicase II compare
Atu1468 -1.4 -6.7 hypothetical protein compare
Atu0537 -1.4 -5.1 histidinol dehydrogenase compare
Atu0895 -1.4 -3.1 ABC transporter, substrate binding protein compare
Atu4502 -1.4 -4.8 cobalamin synthesis protein compare
Atu0601 -1.4 -5.7 oxidoreductase compare
Atu3744 -1.4 -6.3 ABC transporter permease compare
Atu0876 -1.4 -1.6 superoxide dismutase compare
Atu1644 -1.3 -2.5 hypothetical protein compare
Atu2207 -1.3 -2.0 two component sensor kinase compare
Atu2585 -1.3 -3.2 hypothetical protein compare
Atu4608 -1.3 -6.3 hypothetical protein compare
Atu0979 -1.3 -4.1 two component sensor kinase compare
Atu0189 -1.3 -2.5 ABC transporter, membrane spanning protein (peptide) compare
Atu1028 -1.3 -1.9 hypothetical protein compare
Atu0972 -1.3 -3.7 lipA protein compare
Atu0422 -1.3 -1.8 ABC transporter, membrane spanning protein compare
Atu1714 -1.3 -1.3 exonuclease III compare
Atu4072 -1.3 -1.1 nodulation protein N compare
Atu2582 -1.3 -4.3 UDP-glucose/GDP-mannose dehydrogenase compare
Atu8088 -1.3 -1.6 hypothetical protein compare
Atu0978 -1.2 -4.6 two component response regulator compare
Atu1327 -1.2 -1.7 NADH-ubiquinone oxidoreductase compare
Atu1904 -1.2 -2.4 transcriptional regulator compare
Atu4050 -1.2 -2.7 UTP-glucose-1-phosphate uridylyltransferase compare
Atu2555 -1.2 -2.5 L-lysine 2,3-aminomutase compare
Atu1767 -1.2 -4.9 transcriptional regulator, AraC family compare
Atu1291 -1.2 -0.9 hypothetical protein compare
Atu2464 -1.2 -2.5 formyltetrahydrofolate deformylase compare
Atu1679 -1.2 -1.2 peptidyl prolyl cis-trans isomerase compare
Atu1846 -1.2 -1.1 hypothetical protein compare
Atu0544 -1.2 -1.3 hypothetical protein compare
Atu3634 -1.2 -2.7 penicillin-binding protein dacf precursor compare
Atu2289 -1.2 -6.3 anthranilate synthase component I and II compare
Atu3031 -1.2 -1.0 hypothetical protein compare
Atu2583 -1.2 -6.4 glycosyltransferase compare
Atu8082 -1.2 -1.8 hypothetical protein compare
Atu0354 -1.2 -1.6 ferric uptake regulator compare
Atu8056 -1.2 -1.0 hypothetical protein compare
Atu0843 -1.1 -7.1 P type cation (metal) transporter, ATPase component compare
Atu2684 -1.1 -1.2 hypothetical protein compare
Atu2832 -1.1 -2.6 tRNA modification GTPase compare
Atu2591 -1.1 -5.8 glucosyltransferase compare
Atu1076 -1.1 -3.3 colicin V production protein compare
Atu1619 -1.1 -2.2 protein-export membrane protein SECG compare
Atu8138 -1.1 -1.1 hypothetical protein compare
Atu0503 -1.1 -7.2 enoyl-CoA hydratase compare
Atu0638 -1.1 -1.8 hypothetical protein compare
Atu4609 -1.1 -6.2 glycosyltransferase compare
Atu1103 -1.1 -2.0 rRNA-adenine N6,N6-dimethyltransferase compare
Atu4743 -1.1 -3.5 LacI family transcriptional regulator compare
Atu2113 -1.1 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu3466 -1.1 -1.6 ArsR family transcriptional regulator compare
Atu0230 -1.1 -1.5 hypothetical protein compare
Atu1902 -1.1 -3.6 transketolase compare
Atu0723 -1.1 -1.3 FAD dependent oxidoreductase compare
Atu0086 -1.1 -0.7 ribosome-binding factor A compare
Atu3885 -1.1 -4.1 inositol monophosphatase compare
Atu4200 -1.0 -1.8 hypothetical protein compare
Atu2584 -1.0 -3.0 hypothetical protein compare
Atu2634 -1.0 -1.3 hypothetical protein compare
Atu4092 -1.0 -4.3 cytochrome d oxidase subunit II compare
Atu2399 -1.0 -3.2 hypothetical protein compare
Atu0328 -1.0 -5.3 heat-inducible transcription repressor compare
Atu3755 -1.0 -3.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0825 -1.0 -5.0 quinone oxidoreductase compare
Atu0767 -1.0 -3.1 cytochrome c oxidase subunit II compare
Atu2270 -1.0 -1.1 ATP-dependent Clp protease, proteolytic subunit compare
Atu0237 -1.0 -2.5 hypothetical protein compare
Atu0099 -1.0 -3.8 prephenate dehydratase compare
Atu0777 -1.0 -0.6 hypothetical protein compare
Atu4446 -1.0 -5.4 hypothetical protein compare
Atu4176 -1.0 -1.7 hypothetical protein compare
Atu0188 -1.0 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0296 -1.0 -3.8 NADH-ubiquinone oxidoreductase compare
Atu1314 -1.0 -1.9 transcriptional regulator, TetR family compare
Atu0837 -1.0 -3.3 transcriptional regulator, MarR family compare
Atu0166 -1.0 -3.1 hypothetical protein compare
Atu3249 -0.9 -2.9 septum formation inhibitor compare
Atu4055 -0.9 -2.8 endo-1,3-1,4-beta-glycanase compare
Atu1422 -0.9 -4.4 transcriptional regulator, MarR family compare
Atu2462 -0.9 -1.7 hypothetical protein compare
Atu0381 -0.9 -1.6 hypothetical protein compare
Atu1727 -0.9 -2.9 hypothetical protein compare
Atu4873 -0.9 -2.8 TetR family transcriptional regulator compare
Atu0011 -0.9 -2.6 transcriptional regulator compare
Atu0093 -0.9 -2.6 Recombination protein compare
Atu4149 -0.9 -5.4 UDP-glucose 6-dehydrogenase compare
Atu0357 -0.9 -4.4 phosphate starvation inducible protein compare
Atu3609 -0.9 -2.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu0401 -0.9 -1.8 fructokinase compare
Atu1677 -0.9 -1.3 queuine tRNA-ribosyltransferase compare
Atu4882 -0.9 -1.1 hypothetical protein compare
Atu1052 -0.9 -1.6 hypothetical protein compare
Atu0846 -0.9 -1.6 transcriptional regulator, MarR family compare
Atu2216 -0.9 -3.6 Xaa-Pro dipeptidase compare
Atu2592 -0.9 -4.1 hypothetical protein compare
Atu2200 -0.9 -1.2 cold shock protein compare
Atu1159 -0.9 -4.4 arginine-tRNA-protein transferase compare
Atu4139 -0.9 -1.4 hypothetical protein compare
Atu3162 -0.9 -3.3 LacI family transcriptional regulator compare
Atu2238 -0.9 -3.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu5540 -0.9 -0.8 hypothetical protein compare
Atu4451 -0.9 -3.8 mannitol 2-dehydrogenase compare
Atu2590 -0.9 -3.7 hypothetical protein compare
Atu4171 -0.8 -3.5 cold-shock dead-box protein A compare
Atu4162 -0.8 -3.4 two-component response regulator compare
Atu2682 -0.8 -1.7 hypothetical protein compare
Atu3706 -0.8 -3.3 D-3-phosphoglycerate dehydrogenase compare
Atu8165 -0.8 -1.5 hypothetical protein compare
Atu4435 -0.8 -2.2 oligopeptide ABC transporter ATPase compare
Atu3219 -0.8 -4.2 dihydroxy-acid dehydratase compare
Atu2437 -0.8 -3.0 hypothetical protein compare
Atu1712 -0.8 -4.3 deoxyguanosinetriphosphate triphosphohydrolase compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms