Experiment set13IT070 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu0051 -4.2 -4.0 two component sensor kinase compare
Atu6098 -4.0 -1.3 transcriptional regulator, HTH family compare
Atu4072 -3.9 -2.2 nodulation protein N compare
Atu0050 -3.6 -5.5 two component response regulator compare
Atu2554 -3.5 -3.4 lysyl-tRNA synthetase compare
Atu2728 -3.3 -2.3 beta (1-->2) glucan export ATP-binding protein compare
Atu0141 -3.2 -1.7 cytochrome O ubiquinol oxidase subunit I compare
Atu2684 -3.1 -2.4 hypothetical protein compare
Atu0769 -3.1 -1.9 protoheme IX farnesyltransferase compare
Atu4166 -3.0 -2.2 UDP-glucose 4-epimerase compare
Atu4217 -2.9 -1.5 TetR family transcriptional regulator compare
Atu1254 -2.8 -2.4 transcriptional regulator, ArsR family compare
Atu1242 -2.8 -8.0 cytochrome oxidase assembly factor compare
Atu5430 -2.7 -1.7 hypothetical protein compare
Atu2555 -2.6 -4.6 L-lysine 2,3-aminomutase compare
Atu2522 -2.6 -12.1 agrobacterium chromosomal virulence protein B compare
Atu4773 -2.5 -1.6 two component response regulator compare
Atu0142 -2.5 -3.7 cytochrome o ubiquinol oxidase subunit II compare
Atu0039 -2.4 -2.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu0971 -2.4 -2.3 two component sensor kinase compare
Atu0086 -2.3 -1.0 ribosome-binding factor A compare
Atu2125 -2.2 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu1739 -2.1 -2.9 permease compare
Atu0876 -2.1 -2.0 superoxide dismutase compare
Atu0354 -2.1 -2.1 ferric uptake regulator compare
Atu1327 -2.1 -2.8 NADH-ubiquinone oxidoreductase compare
Atu0894 -2.1 -2.7 ABC transporter, membrane spanning protein compare
Atu0679 -2.0 -4.8 ATP phosphoribosyltransferase compare
Atu2662 -2.0 -1.0 acetyltransferase compare
Atu4610 -2.0 -7.3 sugar nucleotide epimerase/dehydratase compare
Atu0999 -2.0 -5.7 magnesium transport protein compare
Atu0143 -2.0 -10.0 MFS permease compare
Atu1364 -1.9 -4.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0795 -1.9 -2.2 hypothetical protein compare
Atu3908 -1.9 -7.1 GntR family transcriptional regulator compare
Atu3763 -1.9 -1.2 hypothetical protein compare
Atu0280 -1.9 -2.6 hypothetical protein compare
Atu2207 -1.9 -2.9 two component sensor kinase compare
Atu4323 -1.8 -4.0 ribitol 2-dehydrogenase compare
Atu0824 -1.8 -1.3 hypothetical protein compare
Atu3598 -1.8 -1.4 thiol:disulfide interchange protein compare
Atu4161 -1.8 -1.3 hypothetical protein compare
Atu3744 -1.7 -6.6 ABC transporter permease compare
Atu0041 -1.7 -1.8 glutamine amidotransferase compare
Atu0977 -1.7 -3.4 serine protease DO-like protease compare
Atu1470 -1.7 -0.9 Camphor resistance protein compare
Atu1750 -1.7 -3.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu4792 -1.7 -2.2 hypothetical protein compare
Atu1647 -1.7 -4.8 ABC transporter, membrane spanning protein compare
Atu1468 -1.7 -4.8 hypothetical protein compare
Atu0138 -1.7 -6.3 surfeit 1 compare
Atu1646 -1.7 -4.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu3544 -1.6 -7.7 arsenical pump membrane protein compare
Atu4613 -1.6 -8.5 glycosyltransferase compare
Atu2521 -1.5 -9.0 Protein regulated by acid pH compare
Atu3732 -1.5 -8.0 hemolysin compare
Atu2235 -1.5 -2.4 hypothetical protein compare
Atu2274 -1.5 -4.3 cation efflux system protein compare
Atu1677 -1.5 -3.2 queuine tRNA-ribosyltransferase compare
Atu0978 -1.5 -4.2 two component response regulator compare
Atu0038 -1.5 -3.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu5057 -1.5 -2.1 hypothetical protein compare
Atu4743 -1.5 -6.6 LacI family transcriptional regulator compare
Atu4053 -1.4 -1.2 succinoglycan biosynthesis protein compare
Atu4615 -1.4 -5.6 glucose-1-phosphate thymidylyltransferase compare
Atu2824 -1.4 -4.5 hypothetical protein compare
Atu3353 -1.4 -6.3 mannose-1-phosphate guanylyltransferase compare
Atu0953 -1.4 -1.0 hypothetical protein compare
Atu0030 -1.4 -1.4 phosphocarrier protein HPr compare
Atu2585 -1.4 -4.6 hypothetical protein compare
Atu4148 -1.4 -4.1 UDP-glucuronic acid epimerase compare
Atu3706 -1.4 -4.5 D-3-phosphoglycerate dehydrogenase compare
Atu2439 -1.4 -1.2 hypothetical protein compare
Atu8082 -1.4 -2.2 hypothetical protein compare
Atu8054 -1.4 -0.7 hypothetical protein compare
Atu0040 -1.4 -1.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0101 -1.3 -2.9 cytochrome c compare
Atu4617 -1.3 -6.3 dTDP-D-glucose-4,6-dehydratase compare
Atu4446 -1.3 -5.9 hypothetical protein compare
Atu1645 -1.3 -4.5 ABC transporter, substrate binding protein compare
Atu0768 -1.3 -6.5 cytochrome-c oxidase chain I compare
Atu0296 -1.3 -4.5 NADH-ubiquinone oxidoreductase compare
Atu1466 -1.3 -1.4 hypothetical protein compare
Atu3311 -1.3 -6.5 phosphomannose isomerase compare
Atu3466 -1.3 -1.9 ArsR family transcriptional regulator compare
Atu2532 -1.3 -2.1 transcriptional regulator, MarR family compare
Atu2577 -1.3 -8.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2083 -1.3 -2.5 DNA repair protein RecN compare
Atu1062 -1.3 -1.3 phosphatidylserine synthase compare
Atu0537 -1.3 -3.9 histidinol dehydrogenase compare
Atu2192 -1.2 -1.2 hypothetical protein compare
Atu0319 -1.2 -1.0 ubiquinone biosynthesis protein compare
Atu4514 -1.2 -3.1 RpiR family transcriptional regulator compare
Atu4614 -1.2 -4.3 glycosyltransferase compare
Atu2183 -1.2 -4.8 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu8168 -1.2 -2.5 hypothetical protein compare
Atu0777 -1.2 -0.7 hypothetical protein compare
Atu1417 -1.2 -4.7 enoyl-CoA hydratase compare
Atu1028 -1.2 -1.8 hypothetical protein compare
Atu2289 -1.2 -7.0 anthranilate synthase component I and II compare
Atu1767 -1.2 -5.2 transcriptional regulator, AraC family compare
Atu0062 -1.2 -3.7 transcriptional regulator, ROK family compare
Atu4093 -1.2 -2.2 hypothetical protein compare
Atu2592 -1.2 -3.9 hypothetical protein compare
Atu0843 -1.1 -6.8 P type cation (metal) transporter, ATPase component compare
Atu0115 -1.1 -0.8 hypothetical protein compare
Atu1570 -1.1 -0.7 hypothetical protein compare
Atu3712 -1.1 -1.3 hypothetical protein compare
Atu3467 -1.1 -1.8 hypothetical protein compare
Atu3613 -1.1 -3.8 hypothetical protein compare
Atu1076 -1.1 -1.7 colicin V production protein compare
Atu3160 -1.1 -2.3 hypothetical protein compare
Atu2433 -1.1 -1.0 hypothetical protein compare
Atu1760 -1.1 -0.9 hypothetical protein compare
Atu0206 -1.1 -1.4 hypothetical protein compare
Atu1902 -1.1 -3.3 transketolase compare
Atu2073 -1.1 -2.0 membrane protein compare
Atu2052 -1.0 -3.8 hypothetical protein compare
Atu2590 -1.0 -6.3 hypothetical protein compare
Atu1030 -1.0 -1.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4576 -1.0 -5.1 ROK family transcriptional regulator compare
Atu0678 -1.0 -2.6 histidyl-tRNA synthetase compare
Atu2582 -1.0 -2.8 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0272 -1.0 -3.2 transcriptional regulator, MarR family compare
Atu3727 -1.0 -3.0 hypothetical protein compare
Atu2583 -1.0 -5.0 glycosyltransferase compare
Atu4618 -1.0 -4.4 dTDP-rhamnose-3,5-epimerase compare
Atu4133 -1.0 -1.4 hypothetical protein compare
Atu1359 -1.0 -0.7 dnaK deletion suppressor protein compare
Atu2832 -1.0 -3.3 tRNA modification GTPase compare
Atu1103 -1.0 -1.3 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1131 -1.0 -4.3 outer membrane protein compare
Atu1140 -1.0 -2.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1724 -1.0 -2.5 hypothetical protein compare
Atu3219 -1.0 -4.9 dihydroxy-acid dehydratase compare
Atu4214 -1.0 -2.7 cold shock protein compare
Atu3162 -0.9 -4.4 LacI family transcriptional regulator compare
Atu4068 -0.9 -1.3 sarcosine oxidase delta subunit compare
Atu3429 -0.9 -0.9 hypothetical protein compare
Atu0153 -0.9 -1.7 transcriptional regulator, Fur family compare
Atu4092 -0.9 -4.9 cytochrome d oxidase subunit II compare
Atu4451 -0.9 -4.0 mannitol 2-dehydrogenase compare
Atu1457 -0.9 -2.4 hypothetical protein compare
Atu1644 -0.9 -1.3 hypothetical protein compare
Atu2584 -0.9 -2.8 hypothetical protein compare
Atu3545 -0.9 -2.7 hypothetical protein compare
Atu2293 -0.9 -1.5 hypothetical protein compare
Atu0636 -0.9 -2.8 hypothetical protein compare
Atu3126 -0.9 -2.1 hypothetical protein compare
Atu4493 -0.9 -3.4 hypothetical protein compare
Atu4608 -0.9 -4.9 hypothetical protein compare
Atu4176 -0.9 -2.2 hypothetical protein compare
Atu0503 -0.9 -5.8 enoyl-CoA hydratase compare
Atu3388 -0.9 -3.1 iron ABC transporter ATPase compare
Atu4479 -0.9 -4.9 MFS permease compare
Atu0099 -0.9 -2.9 prephenate dehydratase compare
Atu0767 -0.9 -2.6 cytochrome c oxidase subunit II compare
Atu2070 -0.9 -4.0 aminopeptidase P compare
Atu1159 -0.9 -2.8 arginine-tRNA-protein transferase compare
Atu3506 -0.8 -1.6 hypothetical protein compare
Atu0276 -0.8 -1.9 hypothetical protein compare
Atu4187 -0.8 -0.7 tRNA-Met compare
Atu3619 -0.8 -2.1 hypothetical protein compare
Atu3885 -0.8 -3.3 inositol monophosphatase compare
Atu0029 -0.8 -2.1 S-adenosylhomocysteine hydrolase compare
Atu0434 -0.8 -1.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu5163 -0.8 -2.9 type IV secretion protein AvhB2 compare
Atu8056 -0.8 -0.8 hypothetical protein compare
Atu0119 -0.8 -0.7 hypothetical protein compare
Atu0095 -0.8 -2.1 hypothetical protein compare
Atu2790 -0.8 -1.4 3-isopropylmalate dehydratase, small subunit compare
Atu5205 -0.8 -2.8 hypothetical protein compare
Atu2264 -0.8 -4.2 2-isopropylmalate synthase compare
Atu4149 -0.8 -4.9 UDP-glucose 6-dehydrogenase compare
Atu8118 -0.8 -1.6 putative universal stress protein compare
Atu8184 -0.8 -2.1 hypothetical protein compare
Atu0979 -0.8 -3.4 two component sensor kinase compare
Atu2191 -0.8 -2.5 transcriptional regulator, LysR family compare
Atu2380 -0.8 -1.4 hypothetical protein compare
Atu1619 -0.8 -1.0 protein-export membrane protein SECG compare
Atu1285 -0.8 -3.4 metal dependent hydrolase compare
Atu3423 -0.8 -1.1 hypothetical protein compare
Atu1810 -0.8 -0.7 hypothetical protein compare
Atu2379 -0.8 -3.3 phosphomannomutase compare
Atu4090 -0.8 -5.0 ABC transporter permease compare
Atu4686 -0.8 -1.5 hypothetical protein compare
Atu1777 -0.8 -1.4 hypothetical protein compare
Atu0401 -0.8 -2.3 fructokinase compare
Atu1566 -0.8 -0.8 hypothetical protein compare
Atu0538 -0.8 -1.3 hypothetical protein compare
Atu0422 -0.8 -1.0 ABC transporter, membrane spanning protein compare
Atu5451 -0.8 -0.8 hypothetical protein compare
Atu3389 -0.8 -3.7 iron ABC transporter permease compare
Atu3177 -0.7 -1.7 ribonuclease H compare
Atu0045 -0.7 -3.4 heat shock chaperone compare
Atu2396 -0.7 -1.7 urease accessory protein compare
Atu2791 -0.7 -2.7 3-isopropylmalate dehydrogenase compare
Atu5145 -0.7 -2.2 acetyltransferase compare
Atu0674 -0.7 -1.5 hypothetical protein compare
Atu0017 -0.7 -1.8 N-(5-phosphoribosyl) anthranilate isomerase compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms