Experiment set13IT061 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.1 -7.7 excinuclease ABC chain C compare
Atu0043 -4.4 -3.0 imidazoleglycerol-phosphate dehydratase compare
Atu1030 -4.1 -2.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2036 -4.0 -16.7 acetolactate synthase III, large subunit compare
Atu2439 -3.7 -2.1 hypothetical protein compare
Atu0038 -3.7 -6.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0041 -3.5 -3.1 glutamine amidotransferase compare
Atu2684 -3.5 -3.2 hypothetical protein compare
Atu2125 -3.4 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3707 -3.4 -4.0 phosphoserine aminotransferase compare
Atu0678 -3.3 -7.8 histidyl-tRNA synthetase compare
Atu0769 -3.3 -2.2 protoheme IX farnesyltransferase compare
Atu4166 -3.2 -2.9 UDP-glucose 4-epimerase compare
Atu0537 -3.1 -8.3 histidinol dehydrogenase compare
Atu4616 -3.1 -1.9 dTDP-4-dehydrorhamnose reductase compare
Atu1417 -3.0 -10.8 enoyl-CoA hydratase compare
Atu1513 -3.0 -6.9 ABC excinuclease subunit A compare
Atu0040 -3.0 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0679 -2.9 -6.5 ATP phosphoribosyltransferase compare
Atu2183 -2.9 -11.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0039 -2.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu3908 -2.8 -10.9 GntR family transcriptional regulator compare
Atu6098 -2.8 -1.5 transcriptional regulator, HTH family compare
Atu2057 -2.8 -3.2 DNA helicase II compare
Atu1588 -2.6 -9.9 homoserine dehydrogenase compare
Atu2040 -2.5 -5.7 phosphoserine phosphatase compare
Atu1750 -2.5 -3.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu4617 -2.4 -12.3 dTDP-D-glucose-4,6-dehydratase compare
Atu0723 -2.4 -1.6 FAD dependent oxidoreductase compare
Atu4618 -2.4 -12.8 dTDP-rhamnose-3,5-epimerase compare
Atu3706 -2.4 -8.2 D-3-phosphoglycerate dehydrogenase compare
Atu0486 -2.3 -5.2 dihydroorotate dehydrogenase compare
Atu0399 -2.2 -7.1 dihydroorotase compare
Atu4614 -2.1 -4.5 glycosyltransferase compare
Atu0331 -2.1 -3.6 sigma-54 modulation protein compare
Atu4613 -2.0 -11.6 glycosyltransferase compare
Atu0971 -2.0 -3.3 two component sensor kinase compare
Atu1141 -2.0 -6.1 Phosphoribosylglycinamide synthetase compare
Atu2709 -2.0 -12.9 3-isopropylmalate dehydratase, large subunit compare
Atu3311 -2.0 -10.9 phosphomannose isomerase compare
Atu4615 -2.0 -7.3 glucose-1-phosphate thymidylyltransferase compare
Atu1205 -2.0 -8.8 threonine dehydratase compare
Atu3353 -2.0 -9.2 mannose-1-phosphate guanylyltransferase compare
Atu2718 -1.9 -8.5 homoserine O-succinyltransferase compare
Atu4317 -1.9 -3.1 TetR family transcriptional regulator compare
Atu3754 -1.8 -4.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4610 -1.8 -9.8 sugar nucleotide epimerase/dehydratase compare
Atu2728 -1.8 -3.7 beta (1-->2) glucan export ATP-binding protein compare
Atu0703 -1.8 -3.9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2791 -1.8 -5.7 3-isopropylmalate dehydrogenase compare
Atu1810 -1.8 -1.4 hypothetical protein compare
Atu1687 -1.8 -7.8 anthranilate phosphoribosyltransferase compare
Atu0434 -1.8 -3.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3469 -1.7 -3.0 phosphoglyceromutase compare
Atu0099 -1.7 -9.1 prephenate dehydratase compare
Atu2001 -1.7 -5.3 excinuclease ABC subunit B compare
Atu0400 -1.7 -3.5 orotate phosphoribosyltransferase compare
Atu0029 -1.7 -6.5 S-adenosylhomocysteine hydrolase compare
Atu2264 -1.7 -9.5 2-isopropylmalate synthase compare
Atu1364 -1.7 -5.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0086 -1.7 -1.3 ribosome-binding factor A compare
Atu2790 -1.7 -3.1 3-isopropylmalate dehydratase, small subunit compare
Atu2379 -1.6 -7.9 phosphomannomutase compare
Atu6189 -1.6 -1.9 protein secretion chaperone compare
Atu1140 -1.5 -4.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4711 -1.5 -4.4 two component sensor kinase compare
Atu1573 -1.5 -1.8 hypothetical protein compare
Atu0647 -1.5 -4.1 phosphoribosylamine--glycine ligase compare
Atu1902 -1.5 -4.4 transketolase compare
Atu1307 -1.5 -5.3 dihydroorotase compare
Atu2620 -1.5 -1.7 hypothetical protein compare
Atu5125 -1.5 -4.6 GntR family transcriptional regulator compare
Atu0017 -1.4 -3.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2832 -1.4 -3.3 tRNA modification GTPase compare
Atu3160 -1.4 -2.1 hypothetical protein compare
Atu0912 -1.4 -1.5 Na+/H+ antiporter compare
Atu2289 -1.4 -10.4 anthranilate synthase component I and II compare
Atu8167 -1.4 -8.4 putative transmembrane protein compare
Atu3763 -1.4 -1.2 hypothetical protein compare
Atu2073 -1.4 -3.8 membrane protein compare
Atu1688 -1.4 -4.6 indole-3-glycerol-phosphate synthase compare
Atu1705 -1.3 -4.0 SEC-independent protein translocase protein compare
Atu2207 -1.3 -3.4 two component sensor kinase compare
Atu1163 -1.3 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3885 -1.3 -5.9 inositol monophosphatase compare
Atu2554 -1.3 -2.2 lysyl-tRNA synthetase compare
Atu4608 -1.3 -9.8 hypothetical protein compare
Atu4609 -1.3 -6.9 glycosyltransferase compare
Atu3712 -1.3 -1.6 hypothetical protein compare
Atu0298 -1.3 -4.2 orotidine 5 compare
Atu1470 -1.2 -0.8 Camphor resistance protein compare
Atu2640 -1.2 -4.4 hypothetical protein compare
Atu3727 -1.2 -3.9 hypothetical protein compare
Atu1075 -1.2 -4.6 amidophosphoribosyltransferase compare
Atu0784 -1.2 -2.7 hypothetical protein compare
Atu1904 -1.2 -2.6 transcriptional regulator compare
Atu1446 -1.2 -1.5 two component response regulator compare
Atu4346 -1.2 -3.3 hypothetical protein compare
Atu1354 -1.2 -1.1 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2662 -1.2 -1.5 acetyltransferase compare
Atu4686 -1.1 -2.1 hypothetical protein compare
Atu1359 -1.1 -1.0 dnaK deletion suppressor protein compare
Atu0894 -1.1 -2.3 ABC transporter, membrane spanning protein compare
Atu1039 -1.1 -3.1 DNA repair protein RecO compare
Atu2555 -1.1 -4.0 L-lysine 2,3-aminomutase compare
Atu4217 -1.1 -1.0 TetR family transcriptional regulator compare
Atu1645 -1.1 -4.9 ABC transporter, substrate binding protein compare
Atu5470 -1.1 -1.5 hypothetical protein compare
Atu1844 -1.1 -2.4 Phosphoribosylformylglycinamidine synthetase compare
Atu0401 -1.1 -4.3 fructokinase compare
Atu0030 -1.1 -1.6 phosphocarrier protein HPr compare
Atu2710 -1.1 -5.0 hypothetical protein compare
Atu1308 -1.1 -4.1 aspartate carbamoyl transferase catalytic subunit compare
Atu0923 -1.1 -5.0 hypothetical protein compare
Atu8056 -1.1 -1.2 hypothetical protein compare
Atu2113 -1.0 -2.8 N-acetylmuramoyl-L-alanine amidase compare
Atu1339 -1.0 -2.3 ribonuclease E compare
Atu1679 -1.0 -2.3 peptidyl prolyl cis-trans isomerase compare
Atu3598 -1.0 -1.4 thiol:disulfide interchange protein compare
Atu0536 -1.0 -4.4 hypothetical protein compare
Atu1646 -1.0 -4.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2052 -1.0 -4.1 hypothetical protein compare
Atu0966 -1.0 -1.8 hypothetical protein compare
Atu4050 -1.0 -0.9 UTP-glucose-1-phosphate uridylyltransferase compare
Atu8138 -1.0 -1.6 hypothetical protein compare
Atu1203 -1.0 -2.6 hypothetical protein compare
Atu1891 -1.0 -2.4 cobalamin biosynthesis protein compare
Atu1327 -1.0 -1.8 NADH-ubiquinone oxidoreductase compare
Atu0050 -1.0 -3.0 two component response regulator compare
Atu4773 -1.0 -1.0 two component response regulator compare
Atu3608 -1.0 -4.0 hypothetical protein compare
Atu0031 -1.0 -1.1 PTS system, IIA component compare
Atu0953 -1.0 -1.0 hypothetical protein compare
Atu1850 -1.0 -1.9 phosphoribosylformylglycinamidine synthetase II compare
Atu3730 -1.0 -1.2 hypothetical protein compare
Atu3755 -1.0 -2.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu5468 -1.0 -2.4 hypothetical protein compare
Atu3219 -1.0 -5.6 dihydroxy-acid dehydratase compare
Atu1619 -1.0 -2.0 protein-export membrane protein SECG compare
Atu1739 -1.0 -2.7 permease compare
Atu2352 -1.0 -2.1 hypothetical protein compare
Atu3739 -0.9 -2.2 phosphoglycerate kinase compare
Atu1845 -0.9 -1.9 phosphoribosylformylglycinamidine synthase I compare
Atu3466 -0.9 -2.3 ArsR family transcriptional regulator compare
Atu1127 -0.9 -2.0 molybdopterin converting factor small subunit compare
Atu2831 -0.9 -3.5 glucose inhibited division protein A compare
Atu0677 -0.9 -2.3 hypothetical protein compare
Atu2532 -0.9 -2.6 transcriptional regulator, MarR family compare
Atu1468 -0.9 -4.4 hypothetical protein compare
Atu1439 -0.9 -1.2 hypothetical protein compare
Atu0093 -0.9 -3.5 Recombination protein compare
Atu3327 -0.9 -1.6 succinoglycan exopolysaccharide synthesis protein compare
Atu0269 -0.9 -3.2 exodeoxyribonuclease VII large subunit compare
Atu1589 -0.9 -2.6 aminotransferase, class I compare
Atu0977 -0.9 -3.0 serine protease DO-like protease compare
Atu0422 -0.9 -1.5 ABC transporter, membrane spanning protein compare
Atu4641 -0.8 -2.1 LysR family transcriptional regulator compare
Atu2522 -0.8 -4.6 agrobacterium chromosomal virulence protein B compare
Atu3485 -0.8 -5.3 short chain dehydrogenase compare
Atu0346 -0.8 -1.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1149 -0.8 -1.3 adenylate cyclase compare
Atu8162 -0.8 -1.0 hypothetical protein compare
Atu0153 -0.8 -2.2 transcriptional regulator, Fur family compare
Atu8082 -0.8 -1.3 hypothetical protein compare
Atu0419 -0.8 -1.9 two component sensor kinase compare
Atu2163 -0.8 -1.2 hypothetical protein compare
Atu3012 -0.8 -1.0 hypothetical protein compare
Atu1467 -0.8 -2.4 hypothetical protein compare
Atu1647 -0.8 -4.0 ABC transporter, membrane spanning protein compare
Atu0319 -0.8 -1.0 ubiquinone biosynthesis protein compare
Atu2793 -0.8 -2.5 cobyrinic acid a,c-diamide synthase compare
Atu1714 -0.8 -1.2 exonuclease III compare
Atu4274 -0.8 -2.9 hypothetical protein compare
Atu4077 -0.8 -4.0 glycogen branching protein compare
Atu2722 -0.8 -3.7 porin compare
Atu0354 -0.8 -1.1 ferric uptake regulator compare
Atu1254 -0.8 -1.3 transcriptional regulator, ArsR family compare
Atu2139 -0.7 -3.3 aldehyde dehydrogenase compare
Atu2824 -0.7 -2.2 hypothetical protein compare
Atu5115 -0.7 -1.3 hypothetical protein compare
Atu1535 -0.7 -2.0 cytochrome c oxidase, FixQ chain compare
Atu4514 -0.7 -2.7 RpiR family transcriptional regulator compare
Atu5501 -0.7 -2.2 hypothetical protein compare
Atu4277 -0.7 -2.6 LamB/YcsF family protein compare
Atu3750 -0.7 -1.4 thiamine-phosphate pyrophosphorylase compare
Atu0499 -0.7 -3.4 hypothetical protein compare
Atu2235 -0.7 -1.8 hypothetical protein compare
Atu0189 -0.7 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu1874 -0.7 -1.4 RecA protein compare
Atu2805 -0.7 -2.9 cobalamin synthesis protein compare
Atu4502 -0.7 -3.1 cobalamin synthesis protein compare
Atu0062 -0.7 -3.8 transcriptional regulator, ROK family compare
Atu1778 -0.7 -5.0 transcription-repair coupling factor compare
Atu0142 -0.7 -1.5 cytochrome o ubiquinol oxidase subunit II compare
Atu0272 -0.7 -2.0 transcriptional regulator, MarR family compare
Atu1225 -0.7 -1.1 hypothetical protein compare
Atu3032 -0.7 -2.3 hypothetical protein compare
Atu0943 -0.7 -1.6 hypothetical protein compare
Atu1110 -0.7 -1.7 cytosol aminopeptidase compare
Atu4658 -0.7 -2.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms