Experiment set13IT058 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1129 -4.7 -8.4 excinuclease ABC chain C compare
Atu0039 -4.5 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu0041 -4.4 -3.0 glutamine amidotransferase compare
Atu1359 -4.3 -1.7 dnaK deletion suppressor protein compare
Atu1030 -4.0 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0678 -3.7 -7.2 histidyl-tRNA synthetase compare
Atu2036 -3.5 -9.9 acetolactate synthase III, large subunit compare
Atu2073 -3.4 -6.0 membrane protein compare
Atu1513 -3.4 -6.0 ABC excinuclease subunit A compare
Atu1750 -3.4 -4.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu4166 -3.2 -2.8 UDP-glucose 4-epimerase compare
Atu0679 -3.1 -7.0 ATP phosphoribosyltransferase compare
Atu4217 -3.0 -1.9 TetR family transcriptional regulator compare
Atu0038 -3.0 -6.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0537 -2.9 -8.6 histidinol dehydrogenase compare
Atu4614 -2.9 -9.4 glycosyltransferase compare
Atu0043 -2.9 -2.7 imidazoleglycerol-phosphate dehydratase compare
Atu4618 -2.9 -12.2 dTDP-rhamnose-3,5-epimerase compare
Atu0040 -2.8 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0703 -2.8 -3.2 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu3730 -2.8 -2.9 hypothetical protein compare
Atu1470 -2.7 -1.5 Camphor resistance protein compare
Atu3908 -2.7 -9.5 GntR family transcriptional regulator compare
Atu2040 -2.6 -5.1 phosphoserine phosphatase compare
Atu3121 -2.6 -1.4 cold shock protein compare
Atu0141 -2.6 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu1417 -2.6 -8.2 enoyl-CoA hydratase compare
Atu2183 -2.5 -8.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2790 -2.5 -3.5 3-isopropylmalate dehydratase, small subunit compare
Atu1205 -2.5 -13.1 threonine dehydratase compare
Atu3706 -2.5 -5.9 D-3-phosphoglycerate dehydrogenase compare
Atu3311 -2.4 -10.8 phosphomannose isomerase compare
Atu1588 -2.4 -8.6 homoserine dehydrogenase compare
Atu3885 -2.4 -7.6 inositol monophosphatase compare
Atu3353 -2.3 -11.3 mannose-1-phosphate guanylyltransferase compare
Atu4617 -2.3 -10.6 dTDP-D-glucose-4,6-dehydratase compare
Atu0399 -2.3 -6.9 dihydroorotase compare
Atu1902 -2.3 -4.6 transketolase compare
Atu4317 -2.3 -3.8 TetR family transcriptional regulator compare
Atu0030 -2.2 -2.3 phosphocarrier protein HPr compare
Atu4711 -2.2 -7.7 two component sensor kinase compare
Atu0400 -2.2 -5.4 orotate phosphoribosyltransferase compare
Atu4613 -2.2 -10.7 glycosyltransferase compare
Atu0434 -2.1 -3.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3763 -2.1 -1.4 hypothetical protein compare
Atu0486 -2.1 -6.2 dihydroorotate dehydrogenase compare
Atu2718 -2.1 -7.4 homoserine O-succinyltransferase compare
Atu0331 -2.1 -4.2 sigma-54 modulation protein compare
Atu1364 -2.0 -6.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0099 -2.0 -11.1 prephenate dehydratase compare
Atu1446 -2.0 -1.8 two component response regulator compare
Atu2791 -2.0 -8.6 3-isopropylmalate dehydrogenase compare
Atu3469 -2.0 -3.2 phosphoglyceromutase compare
Atu0769 -2.0 -1.8 protoheme IX farnesyltransferase compare
Atu3707 -2.0 -2.8 phosphoserine aminotransferase compare
Atu6098 -2.0 -1.3 transcriptional regulator, HTH family compare
Atu3598 -2.0 -1.8 thiol:disulfide interchange protein compare
Atu8056 -1.9 -1.6 hypothetical protein compare
Atu2684 -1.9 -2.1 hypothetical protein compare
Atu0876 -1.9 -2.4 superoxide dismutase compare
Atu1688 -1.9 -5.8 indole-3-glycerol-phosphate synthase compare
Atu0647 -1.9 -4.4 phosphoribosylamine--glycine ligase compare
Atu1307 -1.8 -5.3 dihydroorotase compare
Atu0184 -1.8 -3.3 glucokinase compare
Atu2439 -1.8 -1.9 hypothetical protein compare
Atu3755 -1.8 -4.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2709 -1.8 -10.2 3-isopropylmalate dehydratase, large subunit compare
Atu1810 -1.7 -1.3 hypothetical protein compare
Atu0422 -1.7 -1.4 ABC transporter, membrane spanning protein compare
Atu2264 -1.7 -7.6 2-isopropylmalate synthase compare
Atu0723 -1.7 -1.6 FAD dependent oxidoreductase compare
Atu2125 -1.7 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0977 -1.7 -4.8 serine protease DO-like protease compare
Atu3754 -1.7 -6.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2728 -1.7 -3.5 beta (1-->2) glucan export ATP-binding protein compare
Atu1705 -1.7 -4.0 SEC-independent protein translocase protein compare
Atu1687 -1.6 -9.1 anthranilate phosphoribosyltransferase compare
Atu4773 -1.6 -1.5 two component response regulator compare
Atu2057 -1.6 -2.5 DNA helicase II compare
Atu4610 -1.6 -9.2 sugar nucleotide epimerase/dehydratase compare
Atu0017 -1.6 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2207 -1.6 -4.0 two component sensor kinase compare
Atu2289 -1.5 -10.9 anthranilate synthase component I and II compare
Atu8018 -1.5 -1.3 hypothetical protein compare
Atu2554 -1.5 -2.6 lysyl-tRNA synthetase compare
Atu2001 -1.5 -3.9 excinuclease ABC subunit B compare
Atu0298 -1.5 -6.0 orotidine 5 compare
Atu1140 -1.5 -2.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1308 -1.4 -4.9 aspartate carbamoyl transferase catalytic subunit compare
Atu0031 -1.4 -1.3 PTS system, IIA component compare
Atu4792 -1.4 -2.6 hypothetical protein compare
Atu4615 -1.4 -4.4 glucose-1-phosphate thymidylyltransferase compare
Atu1646 -1.4 -4.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2028 -1.4 -3.0 transcriptional regulator, ArsR family compare
Atu2379 -1.4 -5.4 phosphomannomutase compare
Atu4685 -1.4 -4.7 LacI family transcriptional regulator compare
Atu2192 -1.4 -1.6 hypothetical protein compare
Atu1850 -1.4 -3.9 phosphoribosylformylglycinamidine synthetase II compare
Atu1327 -1.4 -2.9 NADH-ubiquinone oxidoreductase compare
Atu2163 -1.4 -1.6 hypothetical protein compare
Atu0971 -1.4 -2.9 two component sensor kinase compare
Atu1075 -1.4 -5.3 amidophosphoribosyltransferase compare
Atu4609 -1.4 -8.7 glycosyltransferase compare
Atu1219 -1.4 -1.2 hypothetical protein compare
Atu1904 -1.3 -3.9 transcriptional regulator compare
Atu0029 -1.3 -5.1 S-adenosylhomocysteine hydrolase compare
Atu1028 -1.3 -2.3 hypothetical protein compare
Atu1685 -1.3 -1.2 hypothetical protein compare
Atu3012 -1.3 -1.6 hypothetical protein compare
Atu0361 -1.3 -1.8 transcriptional regulator compare
Atu2522 -1.2 -8.8 agrobacterium chromosomal virulence protein B compare
Atu2464 -1.2 -2.4 formyltetrahydrofolate deformylase compare
Atu1570 -1.2 -0.9 hypothetical protein compare
Atu4346 -1.2 -4.0 hypothetical protein compare
Atu0051 -1.2 -4.6 two component sensor kinase compare
Atu8167 -1.2 -5.8 putative transmembrane protein compare
Atu2555 -1.2 -3.9 L-lysine 2,3-aminomutase compare
Atu4616 -1.1 -1.1 dTDP-4-dehydrorhamnose reductase compare
Atu4232 -1.1 -3.2 GntR family transcriptional regulator compare
Atu3727 -1.1 -2.6 hypothetical protein compare
Atu3219 -1.1 -6.9 dihydroxy-acid dehydratase compare
Atu2832 -1.1 -3.0 tRNA modification GTPase compare
Atu3183 -1.1 -0.9 hypothetical protein compare
Atu1141 -1.1 -3.5 Phosphoribosylglycinamide synthetase compare
Atu3009 -1.1 -0.9 exopolysaccharide production protein compare
Atu5160 -1.0 -2.0 transcriptional regulator protein compare
Atu5125 -1.0 -3.5 GntR family transcriptional regulator compare
Atu2437 -1.0 -2.8 hypothetical protein compare
Atu0142 -1.0 -2.4 cytochrome o ubiquinol oxidase subunit II compare
Atu3712 -1.0 -1.0 hypothetical protein compare
Atu3485 -1.0 -6.4 short chain dehydrogenase compare
Atu1619 -1.0 -2.8 protein-export membrane protein SECG compare
Atu6189 -1.0 -1.6 protein secretion chaperone compare
Atu3634 -1.0 -2.5 penicillin-binding protein dacf precursor compare
Atu4514 -1.0 -2.2 RpiR family transcriptional regulator compare
Atu6131 -1.0 -4.3 TraR Antiactivator compare
Atu1970 -1.0 -2.3 hypothetical protein compare
Atu0894 -1.0 -1.4 ABC transporter, membrane spanning protein compare
Atu0354 -1.0 -1.4 ferric uptake regulator compare
Atu4451 -1.0 -4.4 mannitol 2-dehydrogenase compare
Atu1445 -1.0 -3.5 two component sensor kinase compare
Atu1647 -1.0 -4.4 ABC transporter, membrane spanning protein compare
Atu2831 -0.9 -2.6 glucose inhibited division protein A compare
Atu1844 -0.9 -1.1 Phosphoribosylformylglycinamidine synthetase compare
Atu1447 -0.9 -1.4 two component sensor kinase compare
Atu4608 -0.9 -5.2 hypothetical protein compare
Atu0544 -0.9 -2.1 hypothetical protein compare
Atu1754 -0.9 -1.3 hypothetical protein compare
Atu3008 -0.9 -0.6 hypothetical protein compare
Atu1021 -0.9 -1.5 outer membrane protein compare
Atu0026 -0.9 -0.7 hypothetical protein compare
Atu1891 -0.9 -1.9 cobalamin biosynthesis protein compare
Atu0269 -0.9 -2.5 exodeoxyribonuclease VII large subunit compare
Atu4576 -0.9 -5.3 ROK family transcriptional regulator compare
Atu1874 -0.9 -2.0 RecA protein compare
Atu1645 -0.9 -4.0 ABC transporter, substrate binding protein compare
Atu4277 -0.9 -4.3 LamB/YcsF family protein compare
Atu5075 -0.9 -4.3 GntR family transcriptional regulator compare
Atu1099 -0.9 -4.0 hypothetical protein compare
Atu4245 -0.9 -2.5 polyamine ABC transporter permease compare
Atu2592 -0.9 -4.6 hypothetical protein compare
Atu5470 -0.9 -1.8 hypothetical protein compare
Atu1845 -0.9 -2.0 phosphoribosylformylglycinamidine synthase I compare
Atu3963 -0.9 -4.3 GntR family transcriptional regulator compare
Atu4173 -0.9 -1.7 phosphoenolpyruvate-protein phosphotransferase compare
Atu1739 -0.8 -2.3 permease compare
Atu8176 -0.8 -1.4 hypothetical protein compare
Atu4077 -0.8 -4.9 glycogen branching protein compare
Atu3609 -0.8 -4.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu2349 -0.8 -1.4 hypothetical protein compare
Atu1077 -0.8 -2.7 DNA repair protein compare
Atu1778 -0.8 -5.4 transcription-repair coupling factor compare
Atu0189 -0.8 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0062 -0.8 -4.4 transcriptional regulator, ROK family compare
Atu2193 -0.8 -0.7 hypothetical protein compare
Atu0340 -0.8 -1.5 SAM dependent methyltransferase compare
Atu1677 -0.8 -1.8 queuine tRNA-ribosyltransferase compare
Atu2239 -0.8 -2.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2237 -0.8 -2.5 cytochrome c1 compare
Atu2662 -0.8 -1.0 acetyltransferase compare
Atu3731 -0.8 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
Atu2591 -0.8 -3.7 glucosyltransferase compare
Atu3162 -0.8 -3.4 LacI family transcriptional regulator compare
Atu2640 -0.8 -2.5 hypothetical protein compare
Atu3746 -0.8 -2.7 hypothetical protein compare
Atu2824 -0.8 -2.2 hypothetical protein compare
Atu0050 -0.8 -2.7 two component response regulator compare
Atu2582 -0.8 -3.6 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0346 -0.8 -1.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0895 -0.8 -2.0 ABC transporter, substrate binding protein compare
Atu2710 -0.8 -3.1 hypothetical protein compare
Atu3739 -0.8 -1.7 phosphoglycerate kinase compare
Atu5464 -0.8 -5.0 IclR family transcriptional regulator compare
Atu2803 -0.7 -2.2 Cobalamin biosynthesis associated protein compare
Atu4171 -0.7 -3.4 cold-shock dead-box protein A compare
Atu1110 -0.7 -1.9 cytosol aminopeptidase compare
Atu3265 -0.7 -2.6 hypothetical protein compare
Atu2155 -0.7 -5.4 methionine synthase compare
Atu1589 -0.7 -2.6 aminotransferase, class I compare
Atu2376 -0.7 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms