Experiment set13IT057 for Pseudomonas putida KT2440

Compare to:

Defined media with Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM

200 most important genes:

  gene name fitness t score description  
PP_4999 -5.2 -3.6 dihydroorotase-like protein compare
PP_4724 -4.6 -5.5 Carbamoyl-phosphate synthase small chain compare
PP_4723 -4.5 -11.2 Carbamoyl-phosphate synthase large chain compare
PP_0393 -3.3 -6.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0164 -3.2 -8.1 conserved protein of unknown function compare
PP_2000 -2.9 -4.7 amidophosphoribosyl transferase compare
PP_1362 -2.6 -5.2 pyruvate kinase II compare
PP_5216 -2.5 -4.2 exopolyphosphatase compare
PP_0691 -2.4 -4.0 Glutamate 5-kinase compare
PP_2328 -2.3 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_4909 -2.0 -8.0 phosphoserine phosphatase compare
PP_0339 -1.8 -5.5 Pyruvate dehydrogenase E1 component compare
PP_2371 -1.8 -4.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5155 -1.6 -5.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2370 -1.5 -1.7 conserved protein of unknown function compare
PP_3365 -1.5 -2.0 Acetolactate synthase compare
PP_3999 -1.5 -5.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5073 -1.4 -2.7 conserved exported protein of unknown function compare
PP_2414 -1.4 -1.4 conserved exported protein of unknown function compare
PP_1237 -1.4 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5095 -1.3 -2.0 pyrroline-5-carboxylate reductase compare
PP_0719 -1.3 -1.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1344 -1.3 -3.1 conserved protein of unknown function compare
PP_4917 -1.3 -5.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1664 -1.3 -4.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_5274 -1.2 -2.5 conserved protein of unknown function compare
PP_4066 -1.2 -3.4 methylglutaconyl-CoA hydratase compare
PP_1022 -1.2 -4.8 glucose 6-phosphate-1-dehydrogenase compare
PP_5350 -1.2 -2.9 Transcriptional regulator, RpiR family compare
PP_2030 -1.2 -3.9 conserved protein of unknown function compare
PP_1783 -1.2 -2.3 dTDP-glucose pyrophosphorylase compare
PP_2031 -1.1 -3.2 conserved protein of unknown function compare
PP_5453 -1.1 -2.2 conserved protein of unknown function compare
PP_1088 -1.1 -6.8 Argininosuccinate synthase compare
PP_4937 -1.1 -2.9 toluene tolerance protein compare
PP_0789 -1.1 -4.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1763 -1.0 -2.9 putative oxidoreductase compare
PP_5456 -1.0 -2.0 conserved protein of unknown function compare
PP_0319 -1.0 -1.4 conserved protein of unknown function compare
PP_0048 -1.0 -1.4 conserved protein of unknown function compare
PP_4482 -1.0 -3.9 Transcriptional regulator, AraC family compare
PP_0184 -1.0 -4.8 Argininosuccinate lyase compare
PP_1999 -1.0 -1.7 membrane protein required for colicin V production compare
PP_4262 -1.0 -2.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5583 -1.0 -2.1 conserved protein of unknown function compare
PP_5528 -1.0 -2.0 conserved protein of unknown function compare
PP_5289 -1.0 -4.0 Acetylglutamate kinase compare
PP_5329 -1.0 -2.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2044 -0.9 -1.9 conserved inner membrane protein of unknown function compare
PP_1268 -0.9 -2.0 putative HtrA suppressor protein sohA compare
PP_2388 -0.9 -2.4 Transporter, LysE family compare
PP_5473 -0.9 -1.6 putative transcriptional regulator, LuxR family compare
PP_4835 -0.9 -2.2 conserved exported protein of unknown function compare
PP_5267 -0.9 -2.0 putative cytochrome c5 compare
PP_1609 -0.9 -2.5 conserved protein of unknown function compare
PP_2970 -0.9 -2.1 conserved exported protein of unknown function compare
PP_2883 -0.9 -1.5 conserved protein of unknown function compare
PP_4880 -0.8 -5.5 exoribonuclease R compare
PP_5143 -0.8 -2.8 conserved membrane protein of unknown function compare
PP_2253 -0.8 -1.1 Transcriptional regulator, GntR family compare
PP_5028 -0.8 -3.9 proline iminopeptidase compare
PP_4227 -0.8 -1.4 conserved protein of unknown function compare
PP_4797 -0.8 -1.8 conserved protein of unknown function compare
PP_5114 -0.8 -1.8 putative adenine methyltransferase compare
PP_0846 -0.8 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_0833 -0.8 -1.7 queuine tRNA-ribosyltransferase compare
PP_3810 -0.8 -2.1 conserved protein of unknown function compare
PP_4546 -0.8 -2.8 ATP-dependent helicase HrpA compare
PP_3408 -0.8 -3.4 cobalt transporter subunit A compare
PP_2302 -0.8 -3.8 DNA-binding, ATP-dependent protease compare
PP_1068 -0.8 -3.0 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_4254 -0.8 -1.9 conserved protein of unknown function compare
PP_5667 -0.8 -2.0 putative microcin B17-like-processing protein, McbC family compare
PP_2055 -0.8 -1.8 putative isomerase compare
PP_0760 -0.8 -2.6 conserved membrane protein of unknown function compare
PP_3449 -0.7 -2.1 conserved exported protein of unknown function compare
PP_2341 -0.7 -0.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0345 -0.7 -2.1 putative Heptose kinase WapP compare
PP_3726 -0.7 -1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_5535 -0.7 -2.8 conserved membrane protein of unknown function compare
PP_1713 -0.7 -1.7 Transcriptional regulator PcaQ compare
PP_3333 -0.7 -1.7 conserved protein of unknown function compare
PP_0406 -0.7 -2.0 Nucleotidyltransferase family protein compare
PP_1026 -0.7 -2.4 Peptidase, M23/M37 family compare
PP_4268 -0.7 -1.0 nucleoid-associated broad specificity regulator compare
PP_4129 -0.7 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4726 -0.7 -1.9 Chaperone protein DnaJ compare
PP_5185 -0.7 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4874 -0.7 -1.0 50S ribosomal protein L9 compare
PP_0607 -0.7 -2.4 putative Type IV pili biogenesis protein FimT compare
PP_1079 -0.7 -2.8 Ornithine carbamoyltransferase compare
PP_4560 -0.7 -3.6 putative Ribonuclease BN compare
PP_4069 -0.7 -2.1 conserved protein of unknown function compare
PP_5348 -0.7 -3.6 Transcriptional regulator, LysR family compare
PP_3043 -0.7 -1.5 conserved protein of unknown function compare
PP_3808 -0.7 -0.9 Antibiotic synthesis protein MbtH compare
PP_3411 -0.7 -1.4 conserved protein of unknown function compare
PP_4253 -0.7 -1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_2402 -0.7 -2.1 putative Sensor histidine kinase compare
PP_4879 -0.7 -2.9 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5572 -0.7 -2.6 protein of unknown function compare
PP_2513 -0.7 -3.0 4-oxalomesaconate tautomerase compare
PP_1215 -0.7 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_3048 -0.6 -1.4 conserved protein of unknown function compare
PP_1366 -0.6 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_1864 -0.6 -2.0 conserved protein of unknown function compare
PP_1066 -0.6 -1.8 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0666 -0.6 -2.1 conserved protein of unknown function compare
PP_2313 -0.6 -1.7 conserved membrane protein of unknown function compare
PP_0888 -0.6 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_1845 -0.6 -1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_1876 -0.6 -1.4 putative ATP/GTP-binding protein of the AAA+ family compare
PP_5008 -0.6 -1.0 Poly granule-associated protein compare
PP_4699 -0.6 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5346 -0.6 -3.0 pyruvate carboxylase subunit B compare
PP_4787 -0.6 -2.0 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3892 -0.6 -1.0 conserved protein of unknown function compare
PP_0082 -0.6 -3.3 tryptophan synthase alpha chain compare
PP_1833 -0.6 -1.5 conserved protein of unknown function compare
PP_3899 -0.6 -0.7 conserved protein of unknown function, hicB family compare
PP_4981 -0.6 -1.9 polyisoprene-binding protein, acidic stress response factor compare
PP_3715 -0.6 -2.0 Muconate cycloisomerase 1 compare
PP_2442 -0.6 -1.7 conserved protein of unknown function, DUF480 family compare
PP_3539 -0.6 -1.2 putative Transcriptional regulator compare
PP_0291 -0.6 -1.8 conserved protein of unknown function compare
PP_5689 -0.6 -2.7 conserved protein of unknown function compare
PP_5240 -0.6 -1.7 Response regulator compare
PP_3765 -0.6 -2.5 H-NS family protein MvaT compare
PP_2462 -0.6 -1.5 conserved protein of unknown function compare
PP_4701 -0.6 -0.6 glucose-6-phosphate isomerase compare
PP_3185 -0.6 -1.6 Pet18 protein compare
PP_1317 -0.6 -2.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2029 -0.6 -1.6 von Willebrand factor type A domain protein compare
PP_2088 -0.6 -1.8 RNA polymerase sigma factor SigX compare
PP_0628 -0.6 -1.6 conserved protein of unknown function compare
PP_2878 -0.6 -1.1 conserved protein of unknown function compare
PP_5198 -0.6 -1.5 conserved protein of unknown function compare
PP_2903 -0.6 -1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0781 -0.6 -1.9 conserved protein of unknown function compare
PP_4124 -0.6 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_2107 -0.6 -1.1 conserved protein of unknown function compare
PP_0434 -0.6 -2.4 Anhydro-N-acetylmuramic acid kinase compare
PP_4379 -0.6 -1.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0640 -0.5 -1.4 conserved protein of unknown function compare
PP_3265 -0.5 -2.2 putative phosphohydrolase of unknown function compare
PP_5475 -0.5 -1.1 conserved protein of unknown function compare
PP_0290 -0.5 -3.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0040 -0.5 -1.7 hypothetical protein compare
PP_3287 -0.5 -2.1 transcriptional regulator with 4Fe-4S cluster; Crp/Fnr family compare
PP_1790 -0.5 -2.0 putative Acylneuraminate cytidylyltransferase compare
PP_2510 -0.5 -1.2 conserved protein of unknown function compare
PP_1528 -0.5 -0.6 conserved protein of unknown function compare
PP_3799 -0.5 -2.2 conserved exported protein of unknown function compare
PP_2061 -0.5 -1.9 conserved protein of unknown function compare
PP_2960 -0.5 -1.9 transcriptional regulator, AraC family compare
PP_1813 -0.5 -1.7 ComEA-related protein compare
PP_2759 -0.5 -1.4 ribose ABC transporter - ATP-binding subunit compare
PP_2693 -0.5 -1.7 putative Dipeptidase compare
PP_0565 -0.5 -1.6 putative enzyme compare
PP_3693 -0.5 -1.6 putative Transcriptional regulator MvaT, P16 subunit compare
PP_4364 -0.5 -1.7 putative Anti-sigma F factor antagonist compare
PP_4952 -0.5 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4630 -0.5 -2.3 Transcriptional regulator, MerR family compare
PP_0292 -0.5 -1.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0677 -0.5 -1.6 putative Lipoprotein compare
PP_4914 -0.5 -1.5 putative phytase-like protein compare
PP_2226 -0.5 -2.6 putative K(+)/H(+) antiporter subunit F compare
PP_1397 -0.5 -1.7 conserved protein of unknown function compare
PP_3234 -0.5 -1.7 Heat shock protein, HSP20 family compare
PP_1654 -0.5 -1.2 cysteine synthase B compare
PP_2087 -0.5 -1.4 CmpX protein compare
PP_0914 -0.5 -3.5 GGDEF domain protein compare
PP_0295 -0.5 -2.6 choline / betaine / carnitine ABC transporter - membrane subunit compare
PP_1589 -0.5 -3.0 uridylyltransferase compare
PP_2684 -0.5 -1.9 conserved membrane protein of unknown function compare
PP_2771 -0.5 -2.4 Sigma-54 dependent transcriptional regulator compare
PP_0001 -0.5 -0.8 probable chromosome-partitioning protein compare
PP_0289 -0.5 -2.4 Imidazoleglycerol-phosphate dehydratase compare
PP_4875 -0.5 -1.9 conserved membrane protein of unknown function compare
PP_2866 -0.5 -2.5 FMN-dependent NADH-azoreductase 1 compare
PP_3055 -0.5 -1.6 Pyocin R2_PP, tail formation protein compare
PP_3359 -0.5 -1.4 putative Hydroxycinnamic acid degradation regulator compare
PP_3714 -0.5 -2.3 Muconolactone Delta-isomerase compare
PP_4824 -0.5 -2.5 Sensor histidine kinase/response regulator compare
PP_3190 -0.5 -1.1 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_5045 -0.5 -1.8 tRNA sulfurtransferase compare
PP_1493 -0.5 -1.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2615 -0.5 -1.2 hemolysin-coregulated protein compare
PP_2828 -0.5 -1.8 conserved protein of unknown function compare
PP_2409 -0.5 -1.9 cobalt-zinc-cadmium resistance protein compare
PP_0326 -0.5 -1.9 sarcosine oxidase subunit gamma compare
PP_2999 -0.5 -0.8 Glyoxalase family protein compare
PP_4632 -0.5 -2.0 dihydrofolate reductase / dihydromonapterin reductase compare
PP_4808 -0.5 -1.3 23S rRNA m3psi1915 methyltransferase compare
PP_4559 -0.5 -1.7 peptide deformylase compare
PP_4180 -0.5 -1.5 conserved protein of unknown function compare
PP_0274 -0.5 -1.0 putative transcriptional regulator containing HTH domain compare
PP_2730 -0.5 -2.0 putative Lipoprotein compare
PP_1836 -0.5 -1.2 putative metal transporter, ZIP family compare
PP_1480 -0.5 -2.0 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in supernatant experiments

For supernatant Supernatant; Burkholderia bryophila 376MFSha3.1 spent media across organisms