Experiment set13IT056 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.8 -4.0 excinuclease ABC chain C compare
Atu0041 -4.6 -3.1 glutamine amidotransferase compare
Atu4616 -4.3 -2.8 dTDP-4-dehydrorhamnose reductase compare
Atu1030 -4.2 -2.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1513 -3.8 -6.2 ABC excinuclease subunit A compare
Atu2036 -3.6 -16.5 acetolactate synthase III, large subunit compare
Atu2057 -3.6 -2.4 DNA helicase II compare
Atu0537 -3.5 -9.3 histidinol dehydrogenase compare
Atu0769 -3.3 -2.2 protoheme IX farnesyltransferase compare
Atu0679 -3.1 -6.8 ATP phosphoribosyltransferase compare
Atu0043 -3.0 -2.9 imidazoleglycerol-phosphate dehydratase compare
Atu0039 -3.0 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu1750 -2.9 -7.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu4166 -2.9 -2.9 UDP-glucose 4-epimerase compare
Atu1470 -2.9 -1.6 Camphor resistance protein compare
Atu0038 -2.8 -7.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3706 -2.8 -8.1 D-3-phosphoglycerate dehydrogenase compare
Atu0678 -2.8 -8.2 histidyl-tRNA synthetase compare
Atu8018 -2.6 -1.8 hypothetical protein compare
Atu3353 -2.5 -12.0 mannose-1-phosphate guanylyltransferase compare
Atu3707 -2.5 -4.1 phosphoserine aminotransferase compare
Atu0030 -2.5 -2.6 phosphocarrier protein HPr compare
Atu2183 -2.4 -10.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2728 -2.4 -3.6 beta (1-->2) glucan export ATP-binding protein compare
Atu3908 -2.4 -11.4 GntR family transcriptional regulator compare
Atu4618 -2.2 -10.7 dTDP-rhamnose-3,5-epimerase compare
Atu4614 -2.2 -7.4 glycosyltransferase compare
Atu3763 -2.1 -1.4 hypothetical protein compare
Atu0331 -2.1 -3.7 sigma-54 modulation protein compare
Atu6098 -2.1 -1.5 transcriptional regulator, HTH family compare
Atu1902 -2.1 -8.0 transketolase compare
Atu0399 -2.1 -7.3 dihydroorotase compare
Atu1205 -2.0 -11.9 threonine dehydratase compare
Atu4617 -2.0 -7.1 dTDP-D-glucose-4,6-dehydratase compare
Atu0876 -2.0 -2.9 superoxide dismutase compare
Atu0422 -2.0 -2.6 ABC transporter, membrane spanning protein compare
Atu4711 -1.9 -7.6 two component sensor kinase compare
Atu0031 -1.9 -1.7 PTS system, IIA component compare
Atu3885 -1.9 -6.1 inositol monophosphatase compare
Atu1588 -1.9 -7.4 homoserine dehydrogenase compare
Atu4317 -1.9 -4.0 TetR family transcriptional regulator compare
Atu3469 -1.9 -3.2 phosphoglyceromutase compare
Atu3311 -1.9 -10.6 phosphomannose isomerase compare
Atu2125 -1.9 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1688 -1.8 -6.0 indole-3-glycerol-phosphate synthase compare
Atu3754 -1.8 -6.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2001 -1.8 -5.2 excinuclease ABC subunit B compare
Atu4613 -1.8 -10.1 glycosyltransferase compare
Atu1417 -1.8 -6.0 enoyl-CoA hydratase compare
Atu1705 -1.8 -4.6 SEC-independent protein translocase protein compare
Atu2791 -1.8 -7.0 3-isopropylmalate dehydrogenase compare
Atu1646 -1.8 -5.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu3712 -1.7 -1.7 hypothetical protein compare
Atu0971 -1.7 -3.4 two component sensor kinase compare
Atu0953 -1.7 -1.6 hypothetical protein compare
Atu4610 -1.7 -8.9 sugar nucleotide epimerase/dehydratase compare
Atu3598 -1.7 -1.6 thiol:disulfide interchange protein compare
Atu4615 -1.7 -8.7 glucose-1-phosphate thymidylyltransferase compare
Atu2684 -1.7 -1.9 hypothetical protein compare
Atu2718 -1.7 -7.9 homoserine O-succinyltransferase compare
Atu0486 -1.7 -4.1 dihydroorotate dehydrogenase compare
Atu2040 -1.6 -5.1 phosphoserine phosphatase compare
Atu1028 -1.6 -2.9 hypothetical protein compare
Atu2207 -1.6 -3.5 two component sensor kinase compare
Atu0188 -1.6 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu5540 -1.6 -1.6 hypothetical protein compare
Atu0040 -1.6 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1359 -1.5 -1.3 dnaK deletion suppressor protein compare
Atu1687 -1.5 -9.3 anthranilate phosphoribosyltransferase compare
Atu2709 -1.5 -9.7 3-isopropylmalate dehydratase, large subunit compare
Atu2073 -1.5 -3.6 membrane protein compare
Atu3755 -1.5 -4.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2555 -1.5 -3.5 L-lysine 2,3-aminomutase compare
Atu2439 -1.4 -1.3 hypothetical protein compare
Atu2379 -1.4 -6.7 phosphomannomutase compare
Atu1039 -1.4 -4.6 DNA repair protein RecO compare
Atu0400 -1.4 -4.0 orotate phosphoribosyltransferase compare
Atu2464 -1.4 -3.0 formyltetrahydrofolate deformylase compare
Atu0029 -1.4 -6.0 S-adenosylhomocysteine hydrolase compare
Atu4608 -1.4 -8.9 hypothetical protein compare
Atu1141 -1.4 -4.4 Phosphoribosylglycinamide synthetase compare
Atu4609 -1.4 -8.7 glycosyltransferase compare
Atu0647 -1.4 -5.9 phosphoribosylamine--glycine ligase compare
Atu0977 -1.4 -4.0 serine protease DO-like protease compare
Atu2662 -1.4 -1.7 acetyltransferase compare
Atu0401 -1.4 -5.1 fructokinase compare
Atu2264 -1.4 -7.4 2-isopropylmalate synthase compare
Atu1647 -1.3 -5.6 ABC transporter, membrane spanning protein compare
Atu5125 -1.3 -3.6 GntR family transcriptional regulator compare
Atu0434 -1.3 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1904 -1.3 -3.7 transcriptional regulator compare
Atu0099 -1.3 -6.2 prephenate dehydratase compare
Atu1307 -1.3 -3.8 dihydroorotase compare
Atu4148 -1.3 -5.4 UDP-glucuronic acid epimerase compare
Atu1683 -1.3 -2.1 hypothetical protein compare
Atu3730 -1.3 -1.8 hypothetical protein compare
Atu1619 -1.2 -2.9 protein-export membrane protein SECG compare
Atu1714 -1.2 -1.7 exonuclease III compare
Atu2554 -1.2 -2.5 lysyl-tRNA synthetase compare
Atu1364 -1.2 -4.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1850 -1.2 -2.7 phosphoribosylformylglycinamidine synthetase II compare
Atu8167 -1.2 -6.8 putative transmembrane protein compare
Atu0703 -1.2 -2.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1644 -1.2 -3.1 hypothetical protein compare
Atu0050 -1.2 -4.4 two component response regulator compare
Atu8032 -1.2 -1.7 hypothetical protein compare
Atu0912 -1.2 -1.3 Na+/H+ antiporter compare
Atu0086 -1.2 -1.0 ribosome-binding factor A compare
Atu2289 -1.1 -8.4 anthranilate synthase component I and II compare
Atu1447 -1.1 -2.5 two component sensor kinase compare
Atu2376 -1.1 -1.6 hypothetical protein compare
Atu0846 -1.1 -3.1 transcriptional regulator, MarR family compare
Atu2790 -1.1 -2.0 3-isopropylmalate dehydratase, small subunit compare
Atu1021 -1.1 -2.0 outer membrane protein compare
Atu0690 -1.1 -2.0 hypothetical protein compare
Atu2052 -1.1 -4.3 hypothetical protein compare
Atu5142 -1.1 -2.6 hypothetical protein compare
Atu1645 -1.1 -4.7 ABC transporter, substrate binding protein compare
Atu0784 -1.1 -2.7 hypothetical protein compare
Atu1566 -1.1 -1.4 hypothetical protein compare
Atu4077 -1.0 -5.8 glycogen branching protein compare
Atu3219 -1.0 -6.2 dihydroxy-acid dehydratase compare
Atu1308 -1.0 -4.1 aspartate carbamoyl transferase catalytic subunit compare
Atu3739 -1.0 -2.1 phosphoglycerate kinase compare
Atu0346 -1.0 -2.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0499 -1.0 -4.9 hypothetical protein compare
Atu1075 -1.0 -5.0 amidophosphoribosyltransferase compare
Atu2821 -1.0 -3.2 transcriptional regulator, GntR family compare
Atu0141 -1.0 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu1845 -1.0 -2.2 phosphoribosylformylglycinamidine synthase I compare
Atu4773 -1.0 -1.4 two component response regulator compare
Atu1140 -1.0 -3.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0837 -1.0 -4.7 transcriptional regulator, MarR family compare
Atu0189 -1.0 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0413 -0.9 -2.4 stress induced protein compare
Atu2433 -0.9 -1.2 hypothetical protein compare
Atu4149 -0.9 -7.1 UDP-glucose 6-dehydrogenase compare
Atu3008 -0.9 -0.7 hypothetical protein compare
Atu0354 -0.9 -1.8 ferric uptake regulator compare
Atu2083 -0.9 -2.0 DNA repair protein RecN compare
Atu2522 -0.9 -6.2 agrobacterium chromosomal virulence protein B compare
Atu2831 -0.9 -3.6 glucose inhibited division protein A compare
Atu1327 -0.9 -2.4 NADH-ubiquinone oxidoreductase compare
Atu0101 -0.9 -1.6 cytochrome c compare
Atu1844 -0.9 -2.4 Phosphoribosylformylglycinamidine synthetase compare
Atu4093 -0.9 -1.8 hypothetical protein compare
Atu1354 -0.9 -0.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4514 -0.9 -3.7 RpiR family transcriptional regulator compare
Atu0017 -0.9 -2.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3663 -0.9 -1.1 hypothetical protein compare
Atu2633 -0.9 -1.8 RhtB family transporter compare
Atu0093 -0.9 -2.9 Recombination protein compare
Atu1175 -0.9 -1.3 hypothetical protein compare
Atu4686 -0.9 -1.6 hypothetical protein compare
Atu0357 -0.9 -3.7 phosphate starvation inducible protein compare
Atu4274 -0.8 -3.0 hypothetical protein compare
Atu1677 -0.8 -2.5 queuine tRNA-ribosyltransferase compare
Atu3485 -0.8 -5.5 short chain dehydrogenase compare
Atu1778 -0.8 -6.3 transcription-repair coupling factor compare
Atu0565 -0.8 -2.5 hypothetical protein compare
Atu3075 -0.8 -3.3 TetR family transcriptional regulator compare
Atu0923 -0.8 -3.1 hypothetical protein compare
Atu0298 -0.8 -4.1 orotidine 5 compare
Atu1774 -0.8 -3.4 ABC transporter, substrate binding protein (peptide) compare
Atu1339 -0.8 -2.2 ribonuclease E compare
Atu4299 -0.8 -2.8 hypothetical protein compare
Atu2803 -0.8 -2.4 Cobalamin biosynthesis associated protein compare
Atu1495 -0.8 -2.6 hypothetical protein compare
Atu0184 -0.8 -2.0 glucokinase compare
Atu5517 -0.8 -3.4 hypothetical protein compare
Atu1163 -0.8 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2710 -0.8 -4.4 hypothetical protein compare
Atu0386 -0.8 -1.5 hypothetical protein compare
Atu2017 -0.8 -1.0 hypothetical protein compare
Atu1676 -0.8 -3.3 para-aminobenzoate synthase component I compare
Atu8138 -0.8 -1.4 hypothetical protein compare
Atu0368 -0.8 -3.5 tRNA pseudouridine synthase I compare
Atu4502 -0.8 -4.5 cobalamin synthesis protein compare
Atu0051 -0.8 -2.9 two component sensor kinase compare
Atu1780 -0.8 -4.2 ATP-dependent DNA helicase compare
Atu1468 -0.8 -3.6 hypothetical protein compare
Atu4346 -0.8 -3.5 hypothetical protein compare
Atu0361 -0.8 -2.2 transcriptional regulator compare
Atu2432 -0.8 -1.2 hypothetical protein compare
Atu2239 -0.8 -2.2 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1445 -0.8 -2.9 two component sensor kinase compare
Atu2824 -0.8 -2.5 hypothetical protein compare
Atu2113 -0.8 -1.5 N-acetylmuramoyl-L-alanine amidase compare
Atu2591 -0.8 -3.6 glucosyltransferase compare
Atu4477 -0.8 -4.7 TetR family transcriptional regulator compare
Atu6114 -0.7 -1.3 hypothetical protein compare
Atu2123 -0.7 -3.5 methylenetetrahydrofolate reductase compare
Atu0340 -0.7 -1.4 SAM dependent methyltransferase compare
Atu4171 -0.7 -3.2 cold-shock dead-box protein A compare
Atu0290 -0.7 -3.3 rare lipoprotein A compare
Atu0430 -0.7 -4.6 chaperonin (heat shock protein hsp33) compare
Atu4825 -0.7 -3.6 dehydrogenase compare
Atu4792 -0.7 -1.3 hypothetical protein compare
Atu0205 -0.7 -4.6 methylmalonate-semialdehyde dehydrogenase compare
Atu2832 -0.7 -2.7 tRNA modification GTPase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms