Experiment set13IT046 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.3 -5.2 excinuclease ABC chain C compare
Atu2036 -4.3 -16.2 acetolactate synthase III, large subunit compare
Atu1513 -4.0 -3.9 ABC excinuclease subunit A compare
Atu0039 -3.6 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu0041 -3.5 -3.3 glutamine amidotransferase compare
Atu6098 -3.4 -1.4 transcriptional regulator, HTH family compare
Atu0769 -3.0 -2.0 protoheme IX farnesyltransferase compare
Atu4166 -2.8 -3.2 UDP-glucose 4-epimerase compare
Atu0038 -2.8 -6.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4616 -2.8 -2.4 dTDP-4-dehydrorhamnose reductase compare
Atu0043 -2.7 -3.1 imidazoleglycerol-phosphate dehydratase compare
Atu1470 -2.6 -1.5 Camphor resistance protein compare
Atu2439 -2.5 -1.7 hypothetical protein compare
Atu4317 -2.4 -3.2 TetR family transcriptional regulator compare
Atu4614 -2.3 -7.0 glycosyltransferase compare
Atu2183 -2.3 -8.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0537 -2.3 -7.4 histidinol dehydrogenase compare
Atu0017 -2.3 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3908 -2.3 -9.9 GntR family transcriptional regulator compare
Atu2057 -2.2 -2.6 DNA helicase II compare
Atu4618 -2.2 -9.4 dTDP-rhamnose-3,5-epimerase compare
Atu1446 -2.1 -2.8 two component response regulator compare
Atu0678 -2.1 -5.8 histidyl-tRNA synthetase compare
Atu3707 -2.1 -2.3 phosphoserine aminotransferase compare
Atu0876 -2.1 -2.7 superoxide dismutase compare
Atu0030 -2.1 -2.2 phosphocarrier protein HPr compare
Atu1030 -2.0 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3763 -2.0 -1.3 hypothetical protein compare
Atu3311 -2.0 -11.5 phosphomannose isomerase compare
Atu1750 -2.0 -6.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu2728 -1.9 -2.9 beta (1-->2) glucan export ATP-binding protein compare
Atu4613 -1.9 -11.8 glycosyltransferase compare
Atu0141 -1.9 -2.2 cytochrome O ubiquinol oxidase subunit I compare
Atu2001 -1.9 -6.3 excinuclease ABC subunit B compare
Atu3706 -1.9 -7.2 D-3-phosphoglycerate dehydrogenase compare
Atu4615 -1.8 -8.1 glucose-1-phosphate thymidylyltransferase compare
Atu2791 -1.8 -7.9 3-isopropylmalate dehydrogenase compare
Atu3353 -1.8 -10.2 mannose-1-phosphate guanylyltransferase compare
Atu0399 -1.8 -5.4 dihydroorotase compare
Atu4617 -1.8 -7.7 dTDP-D-glucose-4,6-dehydratase compare
Atu1163 -1.7 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu8138 -1.7 -2.1 hypothetical protein compare
Atu4773 -1.7 -1.2 two component response regulator compare
Atu2040 -1.7 -4.8 phosphoserine phosphatase compare
Atu2684 -1.7 -1.7 hypothetical protein compare
Atu0679 -1.6 -4.3 ATP phosphoribosyltransferase compare
Atu1308 -1.6 -5.1 aspartate carbamoyl transferase catalytic subunit compare
Atu0784 -1.6 -2.0 hypothetical protein compare
Atu0331 -1.6 -3.0 sigma-54 modulation protein compare
Atu0184 -1.5 -2.9 glucokinase compare
Atu0026 -1.5 -1.1 hypothetical protein compare
Atu1687 -1.5 -5.8 anthranilate phosphoribosyltransferase compare
Atu2790 -1.5 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu1205 -1.5 -8.5 threonine dehydratase compare
Atu5125 -1.5 -4.7 GntR family transcriptional regulator compare
Atu0434 -1.5 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0400 -1.5 -3.9 orotate phosphoribosyltransferase compare
Atu4610 -1.5 -8.7 sugar nucleotide epimerase/dehydratase compare
Atu0486 -1.5 -4.7 dihydroorotate dehydrogenase compare
Atu4148 -1.5 -5.4 UDP-glucuronic acid epimerase compare
Atu1685 -1.5 -1.3 hypothetical protein compare
Atu0099 -1.5 -6.4 prephenate dehydratase compare
Atu1327 -1.5 -2.5 NADH-ubiquinone oxidoreductase compare
Atu2207 -1.4 -3.7 two component sensor kinase compare
Atu8018 -1.4 -1.2 hypothetical protein compare
Atu0647 -1.4 -5.5 phosphoribosylamine--glycine ligase compare
Atu3754 -1.4 -5.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1588 -1.4 -5.3 homoserine dehydrogenase compare
Atu1307 -1.4 -4.4 dihydroorotase compare
Atu1364 -1.3 -5.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2718 -1.3 -5.0 homoserine O-succinyltransferase compare
Atu0029 -1.3 -5.1 S-adenosylhomocysteine hydrolase compare
Atu0086 -1.3 -1.0 ribosome-binding factor A compare
Atu4882 -1.3 -2.0 hypothetical protein compare
Atu1902 -1.3 -4.5 transketolase compare
Atu4711 -1.3 -5.5 two component sensor kinase compare
Atu2709 -1.3 -8.5 3-isopropylmalate dehydratase, large subunit compare
Atu0894 -1.3 -2.0 ABC transporter, membrane spanning protein compare
Atu4346 -1.3 -4.2 hypothetical protein compare
Atu0040 -1.3 -1.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0703 -1.3 -2.9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0971 -1.2 -2.4 two component sensor kinase compare
Atu1417 -1.2 -4.4 enoyl-CoA hydratase compare
Atu2592 -1.2 -4.5 hypothetical protein compare
Atu1846 -1.2 -1.3 hypothetical protein compare
Atu2577 -1.2 -9.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu8191 -1.2 -1.8 hypothetical protein compare
Atu5430 -1.2 -1.4 hypothetical protein compare
Atu3162 -1.2 -5.9 LacI family transcriptional regulator compare
Atu2379 -1.2 -5.7 phosphomannomutase compare
Atu3598 -1.2 -1.1 thiol:disulfide interchange protein compare
Atu4609 -1.2 -8.1 glycosyltransferase compare
Atu2583 -1.2 -8.6 glycosyltransferase compare
Atu4149 -1.2 -7.7 UDP-glucose 6-dehydrogenase compare
Atu2582 -1.2 -5.0 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0912 -1.2 -1.3 Na+/H+ antiporter compare
Atu2376 -1.2 -2.7 hypothetical protein compare
Atu0051 -1.2 -4.1 two component sensor kinase compare
Atu3469 -1.1 -1.5 phosphoglyceromutase compare
Atu2554 -1.1 -1.7 lysyl-tRNA synthetase compare
Atu3885 -1.1 -4.3 inositol monophosphatase compare
Atu2073 -1.1 -2.6 membrane protein compare
Atu2555 -1.1 -2.5 L-lysine 2,3-aminomutase compare
Atu2803 -1.1 -3.7 Cobalamin biosynthesis associated protein compare
Atu1028 -1.1 -2.2 hypothetical protein compare
Atu1850 -1.1 -2.3 phosphoribosylformylglycinamidine synthetase II compare
Atu3755 -1.1 -4.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4072 -1.1 -1.5 nodulation protein N compare
Atu3727 -1.1 -4.0 hypothetical protein compare
Atu2067 -1.1 -0.8 hypothetical protein compare
Atu2590 -1.1 -5.5 hypothetical protein compare
Atu1688 -1.1 -2.8 indole-3-glycerol-phosphate synthase compare
Atu2125 -1.1 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu4608 -1.1 -6.8 hypothetical protein compare
Atu2584 -1.0 -3.3 hypothetical protein compare
Atu2831 -1.0 -3.9 glucose inhibited division protein A compare
Atu5160 -1.0 -3.2 transcriptional regulator protein compare
Atu1705 -1.0 -3.2 SEC-independent protein translocase protein compare
Atu2264 -1.0 -5.4 2-isopropylmalate synthase compare
Atu1039 -1.0 -2.7 DNA repair protein RecO compare
Atu2591 -1.0 -4.8 glucosyltransferase compare
Atu2289 -1.0 -8.0 anthranilate synthase component I and II compare
Atu1076 -1.0 -2.2 colicin V production protein compare
Atu1140 -1.0 -2.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0354 -1.0 -1.7 ferric uptake regulator compare
Atu4407 -1.0 -2.5 periplasmic nitrate reductase, NapD protein compare
Atu0062 -1.0 -3.7 transcriptional regulator, ROK family compare
Atu2585 -1.0 -3.5 hypothetical protein compare
Atu2522 -1.0 -5.8 agrobacterium chromosomal virulence protein B compare
Atu3348 -1.0 -4.4 hypothetical protein compare
Atu3485 -0.9 -5.4 short chain dehydrogenase compare
Atu8158 -0.9 -1.6 hypothetical protein compare
Atu0230 -0.9 -1.7 hypothetical protein compare
Atu3144 -0.9 -4.6 GntR family transcriptional regulator compare
Atu0422 -0.9 -1.6 ABC transporter, membrane spanning protein compare
Atu1646 -0.9 -3.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1904 -0.9 -2.1 transcriptional regulator compare
Atu3219 -0.9 -6.1 dihydroxy-acid dehydratase compare
Atu0153 -0.9 -2.4 transcriptional regulator, Fur family compare
Atu0368 -0.9 -2.2 tRNA pseudouridine synthase I compare
Atu0401 -0.9 -3.2 fructokinase compare
Atu1359 -0.9 -0.9 dnaK deletion suppressor protein compare
Atu1503 -0.9 -1.0 hypothetical protein compare
Atu1970 -0.9 -2.6 hypothetical protein compare
Atu1075 -0.9 -3.0 amidophosphoribosyltransferase compare
Atu2807 -0.9 -4.3 cob(I)alamin adenosyltransferase compare
Atu8167 -0.9 -5.2 putative transmembrane protein compare
Atu0361 -0.9 -1.3 transcriptional regulator compare
Atu0658 -0.9 -5.1 phosphate permease compare
Atu1645 -0.9 -4.7 ABC transporter, substrate binding protein compare
Atu2832 -0.9 -2.4 tRNA modification GTPase compare
Atu0421 -0.9 -1.0 ABC transporter, membrane spanning protein compare
Atu2442 -0.9 -2.3 hypothetical protein compare
Atu3744 -0.9 -5.3 ABC transporter permease compare
Atu4677 -0.8 -1.1 hypothetical protein compare
Atu3337 -0.8 -4.5 LacI family transcriptional regulator compare
Atu2464 -0.8 -1.9 formyltetrahydrofolate deformylase compare
Atu0640 -0.8 -1.6 hypothetical protein compare
Atu4541 -0.8 -2.7 carboxymuconolactone decarboxylase compare
Atu4232 -0.8 -2.8 GntR family transcriptional regulator compare
Atu4446 -0.8 -4.0 hypothetical protein compare
Atu6153 -0.8 -2.0 conserved hypothetical protein compare
Atu1052 -0.8 -2.0 hypothetical protein compare
Atu1566 -0.8 -0.8 hypothetical protein compare
Atu0660 -0.8 -3.3 hydrolase compare
Atu2532 -0.8 -2.9 transcriptional regulator, MarR family compare
Atu0031 -0.8 -0.9 PTS system, IIA component compare
Atu1468 -0.8 -4.5 hypothetical protein compare
Atu1467 -0.8 -1.7 hypothetical protein compare
Atu1445 -0.8 -2.4 two component sensor kinase compare
Atu3815 -0.8 -3.5 GntR family transcriptional regulator compare
Atu4277 -0.8 -3.0 LamB/YcsF family protein compare
Atu1778 -0.8 -5.6 transcription-repair coupling factor compare
Atu8168 -0.8 -2.1 hypothetical protein compare
Atu2270 -0.8 -1.1 ATP-dependent Clp protease, proteolytic subunit compare
Atu4685 -0.8 -4.0 LacI family transcriptional regulator compare
Atu5124 -0.8 -5.6 glutamate-1-semialdehyde aminotransferase compare
Atu0050 -0.8 -2.7 two component response regulator compare
Atu4077 -0.8 -4.0 glycogen branching protein compare
Atu0206 -0.8 -2.5 hypothetical protein compare
Atu0976 -0.8 -1.5 cycL protein compare
Atu2796 -0.7 -3.7 precorrin-4 C11-methyltransferase compare
Atu3429 -0.7 -1.1 hypothetical protein compare
Atu3609 -0.7 -3.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu3407 -0.7 -4.6 hypothetical protein compare
Atu3835 -0.7 -2.7 hypothetical protein compare
Atu0923 -0.7 -3.0 hypothetical protein compare
Atu1782 -0.7 -2.3 hypothetical protein compare
Atu4514 -0.7 -2.4 RpiR family transcriptional regulator compare
Atu2216 -0.7 -3.3 Xaa-Pro dipeptidase compare
Atu3864 -0.7 -2.5 hypothetical protein compare
Atu2797 -0.7 -1.5 cobalamin biosynthesis protein compare
Atu1495 -0.7 -1.8 hypothetical protein compare
Atu2113 -0.7 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu2662 -0.7 -1.0 acetyltransferase compare
Atu4117 -0.7 -3.4 dipeptide ABC transporter ATPase compare
Atu0977 -0.7 -2.1 serine protease DO-like protease compare
Atu0953 -0.7 -0.8 hypothetical protein compare
Atu3579 -0.7 -1.5 lactoylglutathione lyase compare
Atu1678 -0.7 -3.2 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days across organisms