Experiment set13IT043 for Pseudomonas putida KT2440

Compare to:

Defined media with Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x

200 most important genes:

  gene name fitness t score description  
PP_4724 -5.5 -3.8 Carbamoyl-phosphate synthase small chain compare
PP_4723 -4.6 -12.4 Carbamoyl-phosphate synthase large chain compare
PP_2370 -4.4 -4.6 conserved protein of unknown function compare
PP_0393 -4.1 -6.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0691 -4.0 -5.9 Glutamate 5-kinase compare
PP_5095 -3.9 -4.0 pyrroline-5-carboxylate reductase compare
PP_4909 -3.9 -10.1 phosphoserine phosphatase compare
PP_4999 -3.7 -3.7 dihydroorotase-like protein compare
PP_2371 -3.5 -8.6 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -3.4 -10.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1654 -3.3 -6.4 cysteine synthase B compare
PP_2000 -2.9 -4.9 amidophosphoribosyl transferase compare
PP_0339 -2.5 -6.7 Pyruvate dehydrogenase E1 component compare
PP_0293 -2.3 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5289 -2.3 -7.2 Acetylglutamate kinase compare
PP_2328 -2.2 -7.1 Phosphoadenosine phosphosulfate reductase compare
PP_5155 -2.2 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1088 -2.1 -11.2 Argininosuccinate synthase compare
PP_1986 -2.1 -5.1 3-isopropylmalate dehydratase small subunit compare
PP_5185 -1.9 -7.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0292 -1.8 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0184 -1.8 -6.3 Argininosuccinate lyase compare
PP_1664 -1.8 -5.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_0291 -1.7 -3.3 conserved protein of unknown function compare
PP_0001 -1.6 -2.9 probable chromosome-partitioning protein compare
PP_5350 -1.6 -3.7 Transcriptional regulator, RpiR family compare
PP_1022 -1.5 -5.0 glucose 6-phosphate-1-dehydrogenase compare
PP_1079 -1.5 -5.5 Ornithine carbamoyltransferase compare
PP_1362 -1.5 -5.5 pyruvate kinase II compare
PP_0290 -1.4 -7.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5028 -1.3 -4.5 proline iminopeptidase compare
PP_5076 -1.3 -10.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_5216 -1.3 -1.8 exopolyphosphatase compare
PP_1988 -1.3 -5.4 3-isopropylmalate dehydrogenase compare
PP_5346 -1.3 -6.1 pyruvate carboxylase subunit B compare
PP_3511 -1.3 -4.9 Branched-chain-amino-acid aminotransferase compare
PP_2633 -1.2 -2.3 conserved protein of unknown function compare
PP_5075 -1.2 -7.6 glutamate synthase (NADPH) beta subunit compare
PP_5347 -1.2 -5.7 pyruvate carboxylase subunit A compare
PP_4680 -1.1 -7.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0377 -1.1 -1.5 coenzyme PQQ synthesis protein D compare
PP_5128 -1.1 -6.6 Dihydroxy-acid dehydratase compare
PP_4917 -1.1 -4.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3443 -1.1 -6.5 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_0967 -1.1 -6.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3938 -1.1 -2.6 conserved protein of unknown function compare
PP_0966 -1.1 -5.5 Histidinol dehydrogenase compare
PP_2044 -1.1 -2.2 conserved inner membrane protein of unknown function compare
PP_1716 -1.0 -1.8 Transcriptional regulator, Cro/CI family compare
PP_5348 -1.0 -5.6 Transcriptional regulator, LysR family compare
PP_2848 -1.0 -2.3 urease accessory protein compare
PP_0153 -1.0 -1.3 hypothetical protein compare
PP_2030 -1.0 -3.6 conserved protein of unknown function compare
PP_0957 -1.0 -2.3 D-arabinose 5-phosphate isomerase compare
PP_0086 -1.0 -2.8 conserved protein of unknown function compare
PP_1344 -1.0 -1.8 conserved protein of unknown function compare
PP_0289 -1.0 -4.3 Imidazoleglycerol-phosphate dehydratase compare
PP_2378 -1.0 -3.1 Fe/S biogenesis protein NfuA compare
PP_1304 -1.0 -5.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2442 -1.0 -2.6 conserved protein of unknown function, DUF480 family compare
PP_0083 -1.0 -4.4 tryptophan synthase beta chain compare
PP_1713 -1.0 -1.4 Transcriptional regulator PcaQ compare
PP_4700 -1.0 -2.0 pantothenate synthetase compare
PP_4880 -0.9 -6.2 exoribonuclease R compare
PP_0719 -0.9 -2.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4678 -0.9 -6.5 Ketol-acid reductoisomerase compare
PP_5014 -0.9 -1.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_2883 -0.9 -1.8 conserved protein of unknown function compare
PP_0406 -0.9 -2.9 Nucleotidyltransferase family protein compare
PP_2525 -0.9 -3.3 conserved protein of unknown function compare
PP_1774 -0.9 -2.8 conserved exported protein of unknown function compare
PP_0164 -0.9 -2.6 conserved protein of unknown function compare
PP_4890 -0.9 -2.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5097 -0.9 -6.0 homoserine O-acetyltransferase compare
PP_0760 -0.9 -3.0 conserved membrane protein of unknown function compare
PP_t12 -0.9 -1.3 tRNA-Thr compare
PP_1763 -0.9 -2.5 putative oxidoreductase compare
PP_4126 -0.9 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_5274 -0.9 -2.8 conserved protein of unknown function compare
PP_1269 -0.9 -1.1 Universal stress protein family compare
PP_1683 -0.8 -1.2 Transcriptional regulator, MarR family compare
PP_2402 -0.8 -1.6 putative Sensor histidine kinase compare
PP_3241 -0.8 -1.1 conserved exported protein of unknown function compare
PP_4419 -0.8 -2.3 transposase compare
PP_4214 -0.8 -2.4 pyoverdine biosynthesis related protein compare
PP_5621 -0.8 -1.7 protein of unknown function compare
PP_1068 -0.8 -3.1 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_0401 -0.8 -2.6 Ribosomal RNA small subunit methyltransferase A compare
PP_3810 -0.8 -1.5 conserved protein of unknown function compare
PP_5015 -0.8 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2804 -0.8 -2.7 Hydrolase, alpha/beta fold family compare
PP_1589 -0.8 -5.2 uridylyltransferase compare
PP_1097 -0.8 -1.1 Methionine--tRNA ligase compare
PP_1632 -0.8 -1.3 conserved protein of unknown function compare
PP_4874 -0.8 -1.4 50S ribosomal protein L9 compare
PP_1215 -0.8 -2.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_1451 -0.8 -2.8 conserved exported protein of unknown function compare
PP_1554 -0.8 -2.8 conserved protein of unknown function compare
PP_2302 -0.8 -3.9 DNA-binding, ATP-dependent protease compare
PP_0627 -0.8 -1.7 conserved protein of unknown function compare
PP_4546 -0.8 -2.8 ATP-dependent helicase HrpA compare
PP_0258 -0.8 -2.7 regulator of murein cross-linking compare
PP_0965 -0.8 -4.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2960 -0.8 -3.9 transcriptional regulator, AraC family compare
PP_0556 -0.8 -2.1 Acetoin catabolism protein compare
PP_3449 -0.8 -2.3 conserved exported protein of unknown function compare
PP_3398 -0.8 -1.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3365 -0.8 -1.3 Acetolactate synthase compare
PP_4679 -0.8 -2.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4199 -0.8 -1.1 putative Lipoprotein compare
PP_0914 -0.8 -5.1 GGDEF domain protein compare
PP_0846 -0.8 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_0082 -0.8 -3.6 tryptophan synthase alpha chain compare
PP_3649 -0.8 -3.0 Transcriptional regulator, GntR family compare
PP_0346 -0.7 -4.5 putative Heptose kinase WapQ compare
PP_2429 -0.7 -1.9 putative Membrane protein compare
PP_4058 -0.7 -5.4 1,4-alpha-glucan branching enzyme compare
PP_0941 -0.7 -2.6 putative ribosome associated protein compare
PP_4696 -0.7 -2.8 Nitrogen regulation protein NR(I) compare
PP_3239 -0.7 -1.2 putative cointegrate resolution protein T Tn4652 compare
PP_2403 -0.7 -0.9 Chemotaxis protein CheY compare
PP_0262 -0.7 -2.4 conserved protein of unknown function compare
PP_4129 -0.7 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4271 -0.7 -0.8 conserved protein of unknown function compare
PP_4365 -0.7 -3.0 Flagellar protein FliJ compare
PP_4364 -0.7 -2.5 putative Anti-sigma F factor antagonist compare
PP_2388 -0.7 -2.1 Transporter, LysE family compare
PP_2001 -0.7 -4.4 O-succinylhomoserine sulfhydrylase compare
PP_4517 -0.7 -1.1 conserved protein of unknown function compare
PP_3903 -0.7 -1.2 conserved protein of unknown function compare
PP_5090 -0.7 -1.9 putative cell division protein compare
PP_4937 -0.7 -2.4 toluene tolerance protein compare
PP_3408 -0.7 -1.5 cobalt transporter subunit A compare
PP_0003 -0.7 -2.6 16S RNA methyltransferase compare
PP_4162 -0.7 -1.5 conserved membrane protein of unknown function compare
PP_5628 -0.7 -1.7 conserved protein of unknown function compare
PP_1783 -0.6 -1.0 dTDP-glucose pyrophosphorylase compare
PP_3201 -0.6 -2.6 BNR domain protein compare
PP_4532 -0.6 -1.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5640 -0.6 -1.7 conserved protein of unknown function compare
PP_3924 -0.6 -3.1 conserved protein of unknown function compare
PP_4814 -0.6 -2.1 ATP-dependent protease La domain protein compare
PP_3043 -0.6 -2.0 conserved protein of unknown function compare
PP_0025 -0.6 -0.9 hypothetical protein compare
PP_1355 -0.6 -4.6 Muropeptide permease AmpG compare
PP_5073 -0.6 -1.7 conserved exported protein of unknown function compare
PP_4313 -0.6 -2.1 putative peptidylprolyl isomerase compare
PP_4120 -0.6 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_1268 -0.6 -1.9 putative HtrA suppressor protein sohA compare
PP_5393 -0.6 -1.3 putative metal-binding chaperone compare
PP_1142 -0.6 -0.8 conserved protein of unknown function compare
PP_3064 -0.6 -1.7 Phage tail protein compare
PP_0235 -0.6 -2.6 Peroxidase compare
PP_2695 -0.6 -2.2 Transcriptional regulator, LysR family compare
PP_5331 -0.6 -2.0 Long-chain acyl-CoA thioester hydrolase compare
PP_2055 -0.6 -2.0 putative isomerase compare
PP_5324 -0.6 -1.4 Response regulator compare
PP_2896 -0.6 -3.4 conserved protein of unknown function compare
PP_2454 -0.6 -3.7 ribose ABC transporter, periplasmic ribose-binding subunit compare
PP_4504 -0.6 -0.8 conserved exported protein of unknown function compare
PP_2337 -0.6 -2.2 aconitate isomerase compare
PP_4424 -0.6 -1.1 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_3597 -0.6 -2.0 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_3539 -0.6 -2.2 putative Transcriptional regulator compare
PP_2510 -0.6 -1.4 conserved protein of unknown function compare
PP_1834 -0.6 -2.0 conserved protein of unknown function compare
PP_1214 -0.6 -1.4 putative transcriptional regulatory protein compare
PP_0801 -0.6 -0.9 conserved exported protein of unknown function compare
PP_3003 -0.6 -2.7 3-dehydroquinate dehydratase 3, type II compare
PP_1066 -0.6 -1.9 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0326 -0.6 -2.5 sarcosine oxidase subunit gamma compare
PP_3824 -0.6 -1.4 conserved exported protein of unknown function compare
PP_3075 -0.6 -1.6 putative transcriptional regulator compare
PP_2029 -0.6 -1.3 von Willebrand factor type A domain protein compare
PP_1233 -0.6 -2.8 sulfurtransferase compare
PP_5552 -0.6 -0.9 conserved protein of unknown function compare
PP_2274 -0.6 -2.4 conserved protein of unknown function compare
PP_2513 -0.6 -1.8 4-oxalomesaconate tautomerase compare
PP_2972 -0.6 -1.7 conserved protein of unknown function compare
PP_5265 -0.6 -2.1 Xanthine phosphoribosyltransferase compare
PP_2081 -0.6 -2.9 putative phosphoenolpyruvate synthase regulatory protein compare
PP_0833 -0.6 -1.4 queuine tRNA-ribosyltransferase compare
PP_3715 -0.6 -2.0 Muconate cycloisomerase 1 compare
PP_0832 -0.6 -2.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3726 -0.6 -1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_1845 -0.6 -1.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_2951 -0.6 -2.6 Transcriptional regulator, TetR family compare
PP_5485 -0.5 -2.5 putative N-acetyltransferase, GNAT domain compare
PP_4196 -0.5 -1.1 conserved exported protein of unknown function compare
PP_5475 -0.5 -0.6 conserved protein of unknown function compare
PP_3089 -0.5 -2.2 conserved protein of unknown function compare
PP_2873 -0.5 -2.2 conserved protein of unknown function, UPF0145 family compare
PP_1985 -0.5 -1.6 3-isopropylmalate dehydratase large subunit compare
PP_3121 -0.5 -1.8 transcriptional regulator, LysR family compare
PP_4204 -0.5 -1.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4207 -0.5 -1.8 conserved protein of unknown function compare
PP_2256 -0.5 -1.8 Transcriptional regulator, Cro/CI family compare
PP_1963 -0.5 -3.1 conserved protein of unknown function compare
PP_1025 -0.5 -3.6 2-isopropylmalate synthase compare
PP_4337 -0.5 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in supernatant experiments

For supernatant Supernatant; Paenibacillus sp. UNCCL52 spent media across organisms