Experiment set13IT043 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.3 -6.4 excinuclease ABC chain C compare
Atu1513 -4.2 -4.1 ABC excinuclease subunit A compare
Atu4616 -4.1 -2.8 dTDP-4-dehydrorhamnose reductase compare
Atu1030 -4.1 -2.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3707 -3.9 -3.8 phosphoserine aminotransferase compare
Atu2057 -3.5 -2.4 DNA helicase II compare
Atu2036 -3.5 -14.8 acetolactate synthase III, large subunit compare
Atu2684 -3.3 -2.1 hypothetical protein compare
Atu0039 -3.1 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1359 -2.9 -1.7 dnaK deletion suppressor protein compare
Atu0040 -2.9 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1750 -2.8 -7.8 phosphoribosyl c-AMP cyclohydrolase compare
Atu6098 -2.7 -1.5 transcriptional regulator, HTH family compare
Atu0678 -2.7 -5.5 histidyl-tRNA synthetase compare
Atu2040 -2.6 -6.1 phosphoserine phosphatase compare
Atu0038 -2.5 -6.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3598 -2.5 -2.3 thiol:disulfide interchange protein compare
Atu2728 -2.5 -3.7 beta (1-->2) glucan export ATP-binding protein compare
Atu4166 -2.4 -2.4 UDP-glucose 4-epimerase compare
Atu0679 -2.3 -6.7 ATP phosphoribosyltransferase compare
Atu0041 -2.2 -2.7 glutamine amidotransferase compare
Atu2125 -2.2 -2.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu3353 -2.1 -10.3 mannose-1-phosphate guanylyltransferase compare
Atu0769 -2.1 -2.0 protoheme IX farnesyltransferase compare
Atu4618 -2.1 -11.3 dTDP-rhamnose-3,5-epimerase compare
Atu0537 -2.1 -7.0 histidinol dehydrogenase compare
Atu3908 -2.1 -10.3 GntR family transcriptional regulator compare
Atu0876 -2.0 -2.0 superoxide dismutase compare
Atu4614 -2.0 -6.6 glycosyltransferase compare
Atu4617 -2.0 -10.7 dTDP-D-glucose-4,6-dehydratase compare
Atu3706 -2.0 -7.3 D-3-phosphoglycerate dehydrogenase compare
Atu0703 -1.9 -2.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1028 -1.9 -1.8 hypothetical protein compare
Atu0043 -1.9 -2.9 imidazoleglycerol-phosphate dehydratase compare
Atu4677 -1.9 -2.1 hypothetical protein compare
Atu4317 -1.9 -2.3 TetR family transcriptional regulator compare
Atu2001 -1.9 -4.9 excinuclease ABC subunit B compare
Atu2439 -1.8 -2.0 hypothetical protein compare
Atu3311 -1.8 -9.8 phosphomannose isomerase compare
Atu3885 -1.8 -6.8 inositol monophosphatase compare
Atu0030 -1.8 -2.2 phosphocarrier protein HPr compare
Atu2464 -1.7 -3.3 formyltetrahydrofolate deformylase compare
Atu0784 -1.7 -3.7 hypothetical protein compare
Atu0331 -1.7 -2.7 sigma-54 modulation protein compare
Atu2183 -1.7 -5.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2718 -1.6 -7.0 homoserine O-succinyltransferase compare
Atu1904 -1.6 -3.5 transcriptional regulator compare
Atu0050 -1.6 -5.7 two component response regulator compare
Atu4148 -1.6 -5.6 UDP-glucuronic acid epimerase compare
Atu1874 -1.6 -2.5 RecA protein compare
Atu0399 -1.6 -6.1 dihydroorotase compare
Atu4615 -1.6 -7.4 glucose-1-phosphate thymidylyltransferase compare
Atu1588 -1.6 -7.9 homoserine dehydrogenase compare
Atu1687 -1.6 -8.7 anthranilate phosphoribosyltransferase compare
Atu1417 -1.5 -5.5 enoyl-CoA hydratase compare
Atu0486 -1.5 -4.4 dihydroorotate dehydrogenase compare
Atu0971 -1.5 -3.0 two component sensor kinase compare
Atu3755 -1.4 -5.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1307 -1.4 -3.4 dihydroorotase compare
Atu4613 -1.4 -8.9 glycosyltransferase compare
Atu3730 -1.4 -1.8 hypothetical protein compare
Atu1205 -1.4 -8.3 threonine dehydratase compare
Atu1688 -1.4 -3.5 indole-3-glycerol-phosphate synthase compare
Atu3009 -1.4 -1.1 exopolysaccharide production protein compare
Atu1619 -1.4 -3.6 protein-export membrane protein SECG compare
Atu0093 -1.3 -4.4 Recombination protein compare
Atu5125 -1.3 -4.5 GntR family transcriptional regulator compare
Atu4711 -1.3 -4.9 two component sensor kinase compare
Atu3763 -1.3 -1.2 hypothetical protein compare
Atu0141 -1.3 -1.6 cytochrome O ubiquinol oxidase subunit I compare
Atu2052 -1.3 -4.8 hypothetical protein compare
Atu1077 -1.3 -3.1 DNA repair protein compare
Atu1446 -1.3 -1.6 two component response regulator compare
Atu2583 -1.3 -7.9 glycosyltransferase compare
Atu1810 -1.3 -1.2 hypothetical protein compare
Atu8167 -1.3 -7.3 putative transmembrane protein compare
Atu2289 -1.3 -9.1 anthranilate synthase component I and II compare
Atu1163 -1.3 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1364 -1.3 -4.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2592 -1.3 -6.6 hypothetical protein compare
Atu4149 -1.3 -8.9 UDP-glucose 6-dehydrogenase compare
Atu0017 -1.3 -2.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2591 -1.2 -7.6 glucosyltransferase compare
Atu1646 -1.2 -3.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0400 -1.2 -4.0 orotate phosphoribosyltransferase compare
Atu2554 -1.2 -2.3 lysyl-tRNA synthetase compare
Atu2791 -1.2 -4.5 3-isopropylmalate dehydrogenase compare
Atu2585 -1.2 -5.2 hypothetical protein compare
Atu1902 -1.2 -4.6 transketolase compare
Atu3727 -1.2 -3.8 hypothetical protein compare
Atu0051 -1.2 -4.5 two component sensor kinase compare
Atu1470 -1.2 -0.8 Camphor resistance protein compare
Atu1141 -1.2 -5.1 Phosphoribosylglycinamide synthetase compare
Atu2662 -1.2 -1.0 acetyltransferase compare
Atu1327 -1.2 -2.6 NADH-ubiquinone oxidoreductase compare
Atu2709 -1.2 -9.1 3-isopropylmalate dehydratase, large subunit compare
Atu4610 -1.2 -7.9 sugar nucleotide epimerase/dehydratase compare
Atu1232 -1.2 -2.2 hypothetical protein compare
Atu1140 -1.2 -3.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0029 -1.2 -4.3 S-adenosylhomocysteine hydrolase compare
Atu1679 -1.1 -2.6 peptidyl prolyl cis-trans isomerase compare
Atu4346 -1.1 -3.2 hypothetical protein compare
Atu0647 -1.1 -5.1 phosphoribosylamine--glycine ligase compare
Atu1705 -1.1 -3.3 SEC-independent protein translocase protein compare
Atu0354 -1.1 -2.0 ferric uptake regulator compare
Atu2577 -1.1 -8.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2555 -1.1 -3.0 L-lysine 2,3-aminomutase compare
Atu1308 -1.1 -4.2 aspartate carbamoyl transferase catalytic subunit compare
Atu0298 -1.1 -3.6 orotidine 5 compare
Atu2379 -1.1 -5.2 phosphomannomutase compare
Atu2264 -1.1 -6.6 2-isopropylmalate synthase compare
Atu1219 -1.1 -1.1 hypothetical protein compare
Atu1468 -1.1 -5.6 hypothetical protein compare
Atu0477 -1.1 -1.5 hypothetical protein compare
Atu2522 -1.0 -6.5 agrobacterium chromosomal virulence protein B compare
Atu0099 -1.0 -4.9 prephenate dehydratase compare
Atu0031 -1.0 -1.1 PTS system, IIA component compare
Atu4217 -1.0 -0.9 TetR family transcriptional regulator compare
Atu2582 -1.0 -4.1 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0086 -1.0 -0.9 ribosome-binding factor A compare
Atu3121 -1.0 -0.9 cold shock protein compare
Atu0062 -1.0 -4.4 transcriptional regulator, ROK family compare
Atu2584 -1.0 -4.3 hypothetical protein compare
Atu2073 -1.0 -3.0 membrane protein compare
Atu2590 -1.0 -4.8 hypothetical protein compare
Atu4514 -1.0 -2.9 RpiR family transcriptional regulator compare
Atu4541 -1.0 -2.8 carboxymuconolactone decarboxylase compare
Atu1039 -1.0 -2.9 DNA repair protein RecO compare
Atu1354 -0.9 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0025 -0.9 -1.7 hypothetical protein compare
Atu8056 -0.9 -1.1 hypothetical protein compare
Atu0422 -0.9 -1.6 ABC transporter, membrane spanning protein compare
Atu0401 -0.9 -4.1 fructokinase compare
Atu1850 -0.9 -1.4 phosphoribosylformylglycinamidine synthetase II compare
Atu1645 -0.9 -4.8 ABC transporter, substrate binding protein compare
Atu2821 -0.9 -4.2 transcriptional regulator, GntR family compare
Atu4773 -0.9 -1.2 two component response regulator compare
Atu2790 -0.9 -2.0 3-isopropylmalate dehydratase, small subunit compare
Atu4187 -0.9 -1.0 tRNA-Met compare
Atu1577 -0.9 -3.8 ABC transporter, substrate binding protein (amino acid) compare
Atu0269 -0.9 -3.0 exodeoxyribonuclease VII large subunit compare
Atu4686 -0.9 -0.7 hypothetical protein compare
Atu0188 -0.9 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1891 -0.9 -2.2 cobalamin biosynthesis protein compare
Atu1778 -0.9 -6.4 transcription-repair coupling factor compare
Atu8018 -0.8 -0.9 hypothetical protein compare
Atu8020 -0.8 -2.1 hypothetical protein compare
Atu2722 -0.8 -3.8 porin compare
Atu1818 -0.8 -2.2 hypothetical protein compare
Atu2796 -0.8 -3.8 precorrin-4 C11-methyltransferase compare
Atu2801 -0.8 -3.0 precorrin-2 C20 methyltransferase compare
Atu0966 -0.8 -1.4 hypothetical protein compare
Atu1339 -0.8 -2.5 ribonuclease E compare
Atu0101 -0.8 -1.8 cytochrome c compare
Atu3572 -0.8 -3.9 transcriptional regulator compare
Atu3429 -0.8 -1.1 hypothetical protein compare
Atu0824 -0.8 -1.0 hypothetical protein compare
Atu8046 -0.8 -2.5 hypothetical protein compare
Atu4391 -0.8 -0.9 nitric oxide reductase NorE protein compare
Atu3008 -0.8 -0.6 hypothetical protein compare
Atu0687 -0.8 -1.4 hypothetical protein compare
Atu1099 -0.8 -3.4 hypothetical protein compare
Atu4609 -0.8 -5.5 glycosyltransferase compare
Atu2824 -0.8 -3.0 hypothetical protein compare
Atu2113 -0.8 -1.6 N-acetylmuramoyl-L-alanine amidase compare
Atu4061 -0.8 -1.5 exopolysaccharide production repressor protein compare
Atu1845 -0.8 -1.6 phosphoribosylformylglycinamidine synthase I compare
Atu0073 -0.8 -2.8 recF-like protein compare
Atu0923 -0.8 -4.2 hypothetical protein compare
Atu2207 -0.8 -1.4 two component sensor kinase compare
Atu2349 -0.8 -1.4 hypothetical protein compare
Atu5540 -0.8 -0.9 hypothetical protein compare
Atu2831 -0.8 -3.1 glucose inhibited division protein A compare
Atu1677 -0.7 -2.9 queuine tRNA-ribosyltransferase compare
Atu2286 -0.7 -1.2 hypothetical protein compare
Atu3609 -0.7 -3.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu3754 -0.7 -1.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3750 -0.7 -2.0 thiamine-phosphate pyrophosphorylase compare
Atu4277 -0.7 -4.0 LamB/YcsF family protein compare
Atu0280 -0.7 -1.4 hypothetical protein compare
Atu0482 -0.7 -3.8 polysaccharide deacetylase compare
Atu0142 -0.7 -2.1 cytochrome o ubiquinol oxidase subunit II compare
Atu2237 -0.7 -2.9 cytochrome c1 compare
Atu4077 -0.7 -4.2 glycogen branching protein compare
Atu2633 -0.7 -1.4 RhtB family transporter compare
Atu1647 -0.7 -4.0 ABC transporter, membrane spanning protein compare
Atu1075 -0.7 -3.2 amidophosphoribosyltransferase compare
Atu0432 -0.7 -3.8 O-succinylhomoserine sulfhydrylase compare
Atu2803 -0.7 -2.2 Cobalamin biosynthesis associated protein compare
Atu0977 -0.7 -1.7 serine protease DO-like protease compare
Atu1258 -0.7 -2.3 ATP-dependent Clp protease, proteolytic subunit compare
Atu0421 -0.7 -0.9 ABC transporter, membrane spanning protein compare
Atu0153 -0.7 -2.3 transcriptional regulator, Fur family compare
Atu0434 -0.7 -1.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu8154 -0.7 -1.7 Plasmid stabilization system protein compare
Atu2832 -0.7 -2.1 tRNA modification GTPase compare
Atu4608 -0.7 -4.3 hypothetical protein compare
Atu2532 -0.7 -1.8 transcriptional regulator, MarR family compare
Atu0135 -0.7 -1.1 uracil phosphoribosyltransferase compare
Atu1467 -0.7 -2.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days across organisms