Experiment set13IT042 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.7 -3.9 excinuclease ABC chain C compare
Atu0041 -4.5 -3.1 glutamine amidotransferase compare
Atu4616 -4.2 -2.8 dTDP-4-dehydrorhamnose reductase compare
Atu1030 -4.1 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2036 -3.9 -15.7 acetolactate synthase III, large subunit compare
Atu1513 -3.8 -6.2 ABC excinuclease subunit A compare
Atu0043 -3.7 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu3730 -3.7 -2.5 hypothetical protein compare
Atu3008 -3.5 -1.4 hypothetical protein compare
Atu0769 -3.2 -2.2 protoheme IX farnesyltransferase compare
Atu3353 -3.1 -11.9 mannose-1-phosphate guanylyltransferase compare
Atu4217 -3.1 -2.0 TetR family transcriptional regulator compare
Atu2183 -3.0 -6.8 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0040 -2.9 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0030 -2.9 -2.5 phosphocarrier protein HPr compare
Atu4617 -2.8 -12.2 dTDP-D-glucose-4,6-dehydratase compare
Atu0038 -2.8 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0678 -2.8 -8.3 histidyl-tRNA synthetase compare
Atu2125 -2.7 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3311 -2.6 -14.6 phosphomannose isomerase compare
Atu0039 -2.6 -3.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu0331 -2.6 -3.6 sigma-54 modulation protein compare
Atu0876 -2.6 -3.3 superoxide dismutase compare
Atu4618 -2.6 -10.9 dTDP-rhamnose-3,5-epimerase compare
Atu4166 -2.5 -3.1 UDP-glucose 4-epimerase compare
Atu1750 -2.4 -5.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu0537 -2.3 -8.0 histidinol dehydrogenase compare
Atu2728 -2.3 -3.8 beta (1-->2) glucan export ATP-binding protein compare
Atu2592 -2.3 -7.6 hypothetical protein compare
Atu2554 -2.3 -3.3 lysyl-tRNA synthetase compare
Atu2057 -2.3 -3.0 DNA helicase II compare
Atu2040 -2.3 -4.7 phosphoserine phosphatase compare
Atu0679 -2.3 -6.2 ATP phosphoribosyltransferase compare
Atu0912 -2.2 -1.7 Na+/H+ antiporter compare
Atu4148 -2.2 -8.3 UDP-glucuronic acid epimerase compare
Atu1359 -2.2 -1.5 dnaK deletion suppressor protein compare
Atu2379 -2.2 -8.6 phosphomannomutase compare
Atu2790 -2.2 -3.5 3-isopropylmalate dehydratase, small subunit compare
Atu2207 -2.2 -4.9 two component sensor kinase compare
Atu3469 -2.2 -3.2 phosphoglyceromutase compare
Atu4614 -2.2 -7.3 glycosyltransferase compare
Atu3908 -2.1 -11.8 GntR family transcriptional regulator compare
Atu4610 -2.1 -10.7 sugar nucleotide epimerase/dehydratase compare
Atu3706 -2.1 -9.2 D-3-phosphoglycerate dehydrogenase compare
Atu3763 -2.1 -1.4 hypothetical protein compare
Atu0141 -2.1 -1.8 cytochrome O ubiquinol oxidase subunit I compare
Atu2591 -2.0 -8.1 glucosyltransferase compare
Atu1470 -2.0 -1.5 Camphor resistance protein compare
Atu4149 -2.0 -11.5 UDP-glucose 6-dehydrogenase compare
Atu4613 -2.0 -10.9 glycosyltransferase compare
Atu1588 -1.9 -7.6 homoserine dehydrogenase compare
Atu1644 -1.8 -3.5 hypothetical protein compare
Atu0894 -1.8 -2.9 ABC transporter, membrane spanning protein compare
Atu4317 -1.8 -2.7 TetR family transcriptional regulator compare
Atu2590 -1.8 -8.1 hypothetical protein compare
Atu2577 -1.8 -12.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu4615 -1.8 -7.1 glucose-1-phosphate thymidylyltransferase compare
Atu1810 -1.8 -1.3 hypothetical protein compare
Atu2583 -1.7 -12.0 glycosyltransferase compare
Atu1364 -1.7 -5.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0029 -1.7 -6.4 S-adenosylhomocysteine hydrolase compare
Atu1140 -1.7 -5.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1254 -1.7 -2.3 transcriptional regulator, ArsR family compare
Atu8167 -1.7 -9.2 putative transmembrane protein compare
Atu2585 -1.6 -6.1 hypothetical protein compare
Atu2083 -1.6 -2.8 DNA repair protein RecN compare
Atu2709 -1.6 -10.7 3-isopropylmalate dehydratase, large subunit compare
Atu2584 -1.6 -6.9 hypothetical protein compare
Atu1646 -1.6 -4.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu2001 -1.6 -4.3 excinuclease ABC subunit B compare
Atu2824 -1.6 -4.4 hypothetical protein compare
Atu1874 -1.6 -2.9 RecA protein compare
Atu2464 -1.6 -3.1 formyltetrahydrofolate deformylase compare
Atu1705 -1.5 -4.0 SEC-independent protein translocase protein compare
Atu2439 -1.5 -1.5 hypothetical protein compare
Atu3754 -1.5 -5.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0031 -1.5 -1.4 PTS system, IIA component compare
Atu3885 -1.5 -6.4 inositol monophosphatase compare
Atu1647 -1.5 -6.7 ABC transporter, membrane spanning protein compare
Atu1688 -1.5 -5.4 indole-3-glycerol-phosphate synthase compare
Atu4346 -1.5 -4.9 hypothetical protein compare
Atu2791 -1.4 -6.4 3-isopropylmalate dehydrogenase compare
Atu2582 -1.4 -6.4 UDP-glucose/GDP-mannose dehydrogenase compare
Atu3707 -1.4 -2.7 phosphoserine aminotransferase compare
Atu1468 -1.4 -5.9 hypothetical protein compare
Atu1103 -1.4 -3.0 rRNA-adenine N6,N6-dimethyltransferase compare
Atu4773 -1.4 -1.5 two component response regulator compare
Atu0188 -1.3 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0142 -1.3 -2.4 cytochrome o ubiquinol oxidase subunit II compare
Atu0184 -1.3 -2.8 glucokinase compare
Atu5125 -1.3 -5.2 GntR family transcriptional regulator compare
Atu1629 -1.3 -1.3 transcriptional regulator, ArsR family compare
Atu0107 -1.3 -2.8 hypothetical protein compare
Atu0486 -1.3 -4.0 dihydroorotate dehydrogenase compare
Atu1679 -1.3 -2.2 peptidyl prolyl cis-trans isomerase compare
Atu1205 -1.3 -7.2 threonine dehydratase compare
Atu1902 -1.3 -4.4 transketolase compare
Atu1850 -1.3 -2.1 phosphoribosylformylglycinamidine synthetase II compare
Atu2633 -1.3 -2.2 RhtB family transporter compare
Atu2289 -1.3 -8.8 anthranilate synthase component I and II compare
Atu4514 -1.3 -2.9 RpiR family transcriptional regulator compare
Atu1891 -1.2 -3.5 cobalamin biosynthesis protein compare
Atu4608 -1.2 -7.4 hypothetical protein compare
Atu0354 -1.2 -2.1 ferric uptake regulator compare
Atu0499 -1.2 -6.5 hypothetical protein compare
Atu2684 -1.2 -1.5 hypothetical protein compare
Atu0099 -1.2 -6.2 prephenate dehydratase compare
Atu1645 -1.2 -5.7 ABC transporter, substrate binding protein compare
Atu0971 -1.2 -2.8 two component sensor kinase compare
Atu8159 -1.2 -1.7 hypothetical protein compare
Atu2264 -1.2 -6.9 2-isopropylmalate synthase compare
Atu3121 -1.2 -0.9 cold shock protein compare
Atu2640 -1.2 -4.1 hypothetical protein compare
Atu3739 -1.2 -2.2 phosphoglycerate kinase compare
Atu2718 -1.1 -3.6 homoserine O-succinyltransferase compare
Atu3755 -1.1 -4.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4187 -1.1 -1.2 tRNA-Met compare
Atu0399 -1.1 -3.1 dihydroorotase compare
Atu0340 -1.1 -1.9 SAM dependent methyltransferase compare
Atu1803 -1.1 -3.5 cold shock protein compare
Atu0895 -1.1 -2.4 ABC transporter, substrate binding protein compare
Atu1141 -1.1 -3.3 Phosphoribosylglycinamide synthetase compare
Atu8018 -1.1 -1.1 hypothetical protein compare
Atu0809 -1.1 -1.4 hypothetical protein compare
Atu3183 -1.1 -0.9 hypothetical protein compare
Atu0647 -1.1 -3.3 phosphoribosylamine--glycine ligase compare
Atu0723 -1.1 -1.2 FAD dependent oxidoreductase compare
Atu1307 -1.1 -3.4 dihydroorotase compare
Atu0923 -1.1 -3.2 hypothetical protein compare
Atu8118 -1.1 -4.1 putative universal stress protein compare
Atu1687 -1.1 -5.4 anthranilate phosphoribosyltransferase compare
Atu0422 -1.1 -1.2 ABC transporter, membrane spanning protein compare
Atu0086 -1.1 -0.9 ribosome-binding factor A compare
Atu0784 -1.1 -2.3 hypothetical protein compare
Atu1417 -1.0 -5.3 enoyl-CoA hydratase compare
Atu2068 -1.0 -3.2 hypothetical protein compare
Atu2191 -1.0 -3.1 transcriptional regulator, LysR family compare
Atu4609 -1.0 -7.0 glycosyltransferase compare
Atu2073 -1.0 -3.3 membrane protein compare
Atu2352 -1.0 -2.0 hypothetical protein compare
Atu1028 -1.0 -2.1 hypothetical protein compare
Atu2270 -1.0 -1.6 ATP-dependent Clp protease, proteolytic subunit compare
Atu1818 -1.0 -2.0 hypothetical protein compare
Atu3219 -1.0 -6.3 dihydroxy-acid dehydratase compare
Atu2677 -1.0 -2.5 protein tyrosine phosphatase compare
Atu0660 -1.0 -5.2 hydrolase compare
Atu0189 -1.0 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu4061 -1.0 -1.5 exopolysaccharide production repressor protein compare
Atu0036 -1.0 -2.4 hypothetical protein compare
Atu1213 -1.0 -1.4 hypothetical protein compare
Atu0201 -1.0 -1.6 hypothetical protein compare
Atu8138 -0.9 -1.5 hypothetical protein compare
Atu2483 -0.9 -7.0 AcrB/AcrD/AcrF family protein compare
Atu1446 -0.9 -1.6 two component response regulator compare
Atu6098 -0.9 -0.8 transcriptional regulator, HTH family compare
Atu0115 -0.9 -1.0 hypothetical protein compare
Atu1039 -0.9 -2.2 DNA repair protein RecO compare
Atu4882 -0.9 -1.7 hypothetical protein compare
Atu0837 -0.9 -4.5 transcriptional regulator, MarR family compare
Atu0703 -0.9 -2.4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1219 -0.9 -0.8 hypothetical protein compare
Atu0400 -0.9 -3.1 orotate phosphoribosyltransferase compare
Atu2052 -0.9 -2.8 hypothetical protein compare
Atu1536 -0.9 -3.4 cytochrome C oxidase, FixO chain compare
Atu1677 -0.9 -2.8 queuine tRNA-ribosyltransferase compare
Atu2406 -0.9 -1.8 hypothetical protein compare
Atu2762 -0.9 -1.6 hypothetical protein compare
Atu0977 -0.9 -3.1 serine protease DO-like protease compare
Atu0421 -0.9 -1.0 ABC transporter, membrane spanning protein compare
Atu1484 -0.9 -2.4 transcriptional regulator compare
Atu0434 -0.8 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4405 -0.8 -2.2 periplasmic nitrate reductase NapE compare
Atu0269 -0.8 -3.0 exodeoxyribonuclease VII large subunit compare
Atu2722 -0.8 -4.1 porin compare
Atu4072 -0.8 -0.8 nodulation protein N compare
Atu3461 -0.8 -1.9 GntR family transcriptional regulator compare
Atu0973 -0.8 -3.9 cycH protein compare
Atu2376 -0.8 -1.4 hypothetical protein compare
Atu2831 -0.8 -2.6 glucose inhibited division protein A compare
Atu0432 -0.8 -4.2 O-succinylhomoserine sulfhydrylase compare
Atu1778 -0.8 -5.2 transcription-repair coupling factor compare
Atu2249 -0.8 -0.9 hypothetical protein compare
Atu1847 -0.8 -1.5 hypothetical protein compare
Atu3609 -0.8 -3.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu2217 -0.8 -3.2 hypothetical protein compare
Atu3248 -0.8 -3.7 cell division inhibitor compare
Atu0401 -0.8 -3.7 fructokinase compare
Atu3466 -0.8 -1.7 ArsR family transcriptional regulator compare
Atu3613 -0.8 -3.3 hypothetical protein compare
Atu0190 -0.8 -2.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2238 -0.7 -2.9 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1076 -0.7 -2.1 colicin V production protein compare
Atu0566 -0.7 -1.3 hypothetical protein compare
Atu0205 -0.7 -4.1 methylmalonate-semialdehyde dehydrogenase compare
Atu0687 -0.7 -1.8 hypothetical protein compare
Atu3246 -0.7 -2.1 amino acid ABC transporter substrate-binding protein compare
Atu0601 -0.7 -4.7 oxidoreductase compare
Atu3485 -0.7 -3.8 short chain dehydrogenase compare
Atu3162 -0.7 -3.8 LacI family transcriptional regulator compare
Atu1175 -0.7 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days across organisms