Experiment set13IT039 for Pseudomonas putida KT2440

Compare to:

Defined media with Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x

200 most important genes:

  gene name fitness t score description  
PP_4724 -5.5 -3.8 Carbamoyl-phosphate synthase small chain compare
PP_4999 -5.4 -3.7 dihydroorotase-like protein compare
PP_4723 -5.3 -8.1 Carbamoyl-phosphate synthase large chain compare
PP_2000 -3.4 -5.1 amidophosphoribosyl transferase compare
PP_0691 -3.3 -4.5 Glutamate 5-kinase compare
PP_2370 -2.9 -4.6 conserved protein of unknown function compare
PP_0164 -2.8 -4.8 conserved protein of unknown function compare
PP_1362 -2.4 -4.5 pyruvate kinase II compare
PP_4909 -2.2 -7.0 phosphoserine phosphatase compare
PP_1088 -2.1 -9.3 Argininosuccinate synthase compare
PP_5155 -2.1 -3.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0393 -2.0 -3.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3999 -2.0 -6.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5095 -2.0 -2.2 pyrroline-5-carboxylate reductase compare
PP_0292 -1.8 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0966 -1.8 -8.1 Histidinol dehydrogenase compare
PP_0339 -1.7 -5.0 Pyruvate dehydrogenase E1 component compare
PP_2371 -1.7 -4.9 Sulphite reductase hemoprotein, beta subunit compare
PP_5289 -1.7 -4.9 Acetylglutamate kinase compare
PP_2328 -1.7 -6.0 Phosphoadenosine phosphosulfate reductase compare
PP_0184 -1.7 -5.2 Argininosuccinate lyase compare
PP_1664 -1.7 -3.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_0289 -1.6 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_1022 -1.6 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_5015 -1.5 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0965 -1.5 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_t12 -1.5 -1.6 tRNA-Thr compare
PP_1763 -1.4 -5.2 putative oxidoreductase compare
PP_4136 -1.4 -1.4 Transcriptional regulator, LuxR family compare
PP_0967 -1.4 -5.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4917 -1.4 -5.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5350 -1.3 -4.2 Transcriptional regulator, RpiR family compare
PP_5185 -1.3 -4.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0276 -1.2 -1.3 Transcriptional regulator, Cro/CI family compare
PP_0290 -1.2 -5.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5014 -1.2 -2.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4238 -1.2 -3.3 conserved protein of unknown function compare
PP_0291 -1.2 -1.6 conserved protein of unknown function compare
PP_1605 -1.1 -2.0 Ribonuclease HII compare
PP_4700 -1.1 -3.2 pantothenate synthetase compare
PP_4890 -1.1 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -1.1 -5.0 Dihydroxy-acid dehydratase compare
PP_1654 -1.1 -2.2 cysteine synthase B compare
PP_0152 -1.1 -2.9 conserved exported protein of unknown function compare
PP_5347 -1.1 -5.4 pyruvate carboxylase subunit A compare
PP_1215 -1.1 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1208 -1.1 -2.2 conserved protein of unknown function, SlyX family compare
PP_0293 -1.1 -1.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4997 -1.0 -1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4722 -1.0 -3.7 Transcription elongation factor GreA compare
PP_5346 -1.0 -4.3 pyruvate carboxylase subunit B compare
PP_2903 -1.0 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2313 -1.0 -2.0 conserved membrane protein of unknown function compare
PP_4120 -1.0 -3.8 NADH-quinone oxidoreductase subunit B compare
PP_4122 -1.0 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3110 -1.0 -2.3 protein of unknown function compare
PP_2210 -1.0 -2.7 LysR family transcriptional regulator compare
PP_2675 -1.0 -2.7 Cytochrome c-type protein compare
PP_4981 -1.0 -1.5 polyisoprene-binding protein, acidic stress response factor compare
PP_0914 -0.9 -6.2 GGDEF domain protein compare
PP_1026 -0.9 -2.4 Peptidase, M23/M37 family compare
PP_5674 -0.9 -2.4 conserved protein of unknown function compare
PP_2402 -0.9 -1.9 putative Sensor histidine kinase compare
PP_1268 -0.9 -1.7 putative HtrA suppressor protein sohA compare
PP_3241 -0.9 -1.0 conserved exported protein of unknown function compare
PP_2510 -0.9 -1.3 conserved protein of unknown function compare
PP_4679 -0.9 -3.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1783 -0.9 -1.7 dTDP-glucose pyrophosphorylase compare
PP_5028 -0.9 -2.1 proline iminopeptidase compare
PP_4130 -0.9 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3580 -0.9 -1.6 conserved protein of unknown function compare
PP_1186 -0.9 -2.1 two component system DNA-binding transcriptional dual regulator compare
PP_0508 -0.9 -2.1 conserved exported protein of unknown function compare
PP_1589 -0.9 -5.6 uridylyltransferase compare
PP_5007 -0.8 -1.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2883 -0.8 -1.5 conserved protein of unknown function compare
PP_0757 -0.8 -2.0 conserved protein of unknown function compare
PP_4254 -0.8 -1.3 conserved protein of unknown function compare
PP_2520 -0.8 -2.5 conserved protein of unknown function compare
PP_1198 -0.8 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4356 -0.8 -1.4 Flagellar protein FliO compare
PP_5348 -0.8 -4.5 Transcriptional regulator, LysR family compare
PP_5423 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_5191 -0.8 -2.8 conserved exported protein of unknown function compare
PP_5329 -0.8 -1.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5331 -0.8 -1.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4546 -0.8 -3.0 ATP-dependent helicase HrpA compare
PP_5313 -0.8 -1.5 DNA-binding protein HU-alpha compare
PP_1824 -0.8 -1.4 Smr domain protein compare
PP_1066 -0.8 -2.7 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0781 -0.8 -1.7 conserved protein of unknown function compare
PP_0001 -0.8 -2.1 probable chromosome-partitioning protein compare
PP_3443 -0.8 -4.2 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_0304 -0.8 -3.2 Carnitine uptake ABC transporter, periplasmic component compare
PP_2302 -0.8 -2.8 DNA-binding, ATP-dependent protease compare
PP_4726 -0.8 -1.5 Chaperone protein DnaJ compare
PP_2610 -0.8 -3.4 conserved protein of unknown function compare
PP_2653 -0.8 -1.9 Transcriptional regulator, Cro/CI family compare
PP_4835 -0.7 -1.9 conserved exported protein of unknown function compare
PP_0957 -0.7 -1.3 D-arabinose 5-phosphate isomerase compare
PP_1473 -0.7 -1.8 conserved protein of unknown function compare
PP_4632 -0.7 -3.2 dihydrofolate reductase / dihydromonapterin reductase compare
PP_1790 -0.7 -2.2 putative Acylneuraminate cytidylyltransferase compare
PP_3874 -0.7 -1.2 conserved protein of unknown function compare
PP_3906 -0.7 -2.7 conserved protein of unknown function compare
PP_2680 -0.7 -2.0 aldehyde dehydrogenase compare
PP_3511 -0.7 -3.6 Branched-chain-amino-acid aminotransferase compare
PP_3408 -0.7 -2.4 cobalt transporter subunit A compare
PP_2429 -0.7 -1.7 putative Membrane protein compare
PP_3505 -0.7 -2.1 conserved protein of unknown function compare
PP_1025 -0.7 -5.1 2-isopropylmalate synthase compare
PP_4131 -0.7 -3.2 NADH-quinone oxidoreductase subunit N compare
PP_1344 -0.7 -1.5 conserved protein of unknown function compare
PP_5473 -0.7 -1.0 putative transcriptional regulator, LuxR family compare
PP_1355 -0.7 -4.7 Muropeptide permease AmpG compare
PP_1554 -0.7 -1.2 conserved protein of unknown function compare
PP_2525 -0.7 -2.5 conserved protein of unknown function compare
PP_4902 -0.7 -1.5 Oligoribonuclease compare
PP_1864 -0.7 -2.3 conserved protein of unknown function compare
PP_4880 -0.7 -4.3 exoribonuclease R compare
PP_2878 -0.7 -1.2 conserved protein of unknown function compare
PP_3765 -0.7 -2.1 H-NS family protein MvaT compare
PP_0182 -0.7 -1.7 conserved protein of unknown function compare
PP_0760 -0.7 -2.1 conserved membrane protein of unknown function compare
PP_2336 -0.7 -3.1 aconitate hydratase 1 compare
PP_1678 -0.7 -1.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2773 -0.7 -1.3 conserved protein of unknown function compare
PP_4678 -0.7 -4.5 Ketol-acid reductoisomerase compare
PP_5221 -0.7 -1.8 conserved protein of unknown function, UPF0178 family compare
PP_0236 -0.7 -1.5 NAD(P)H-dependent FMN reductase subunit compare
PP_0986 -0.7 -3.1 aminomethyltransferase compare
PP_1079 -0.7 -1.8 Ornithine carbamoyltransferase compare
PP_4426 -0.7 -1.8 Amino acid ABC transporter, permease protein compare
PP_3307 -0.7 -1.4 conserved protein of unknown function compare
PP_2648 -0.7 -2.2 Universal stress protein family compare
PP_2894 -0.7 -2.3 conserved protein of unknown function compare
PP_2454 -0.7 -2.6 ribose ABC transporter, periplasmic ribose-binding subunit compare
PP_5039 -0.6 -1.8 conserved protein of unknown function compare
PP_1304 -0.6 -3.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2681 -0.6 -1.2 coenzyme PQQ synthesis protein D compare
PP_5604 -0.6 -0.8 putative subtilisin-like serine protease compare
PP_1986 -0.6 -1.4 3-isopropylmalate dehydratase small subunit compare
PP_4666 -0.6 -3.2 3-hydroxyisobutyrate dehydrogenase compare
PP_4879 -0.6 -2.1 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_0610 -0.6 -1.5 conserved exported protein of unknown function compare
PP_3398 -0.6 -1.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4263 -0.6 -2.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2695 -0.6 -2.2 Transcriptional regulator, LysR family compare
PP_2152 -0.6 -2.4 glycerophosphoryl diester phosphodiesterase compare
PP_4258 -0.6 -2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_0220 -0.6 -1.8 methionine import ATP-binding protein metN2 compare
PP_3693 -0.6 -1.9 putative Transcriptional regulator MvaT, P16 subunit compare
PP_5686 -0.6 -2.4 protein of unknown function compare
PP_4066 -0.6 -1.4 methylglutaconyl-CoA hydratase compare
PP_5052 -0.6 -1.1 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_2055 -0.6 -2.3 putative isomerase compare
PP_4925 -0.6 -2.6 conserved protein of unknown function compare
PP_4058 -0.6 -4.1 1,4-alpha-glucan branching enzyme compare
PP_4895 -0.6 -1.7 tRNA dimethylallyltransferase compare
PP_5500 -0.6 -1.3 protein of unknown function compare
PP_3884 -0.6 -2.7 Phage holin, lambda family compare
PP_2067 -0.6 -2.4 putative EmrB/QacA family drug resistance transporter compare
PP_0888 -0.6 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_3730 -0.6 -1.5 Transcriptional regulatory protein AruR compare
PP_3647 -0.6 -2.6 putative Oxidoreductase compare
PP_1836 -0.6 -2.1 putative metal transporter, ZIP family compare
PP_1494 -0.6 -2.9 Response regulator/GGDEF domain protein compare
PP_t11 -0.6 -1.3 tRNA-Lys compare
PP_1860 -0.6 -2.2 Organic hydroperoxide resistance transcriptional regulator compare
PP_0125 -0.6 -2.4 putative cytochrome c-type protein compare
PP_4625 -0.6 -2.3 anti-holin regulator of holin CidA compare
PP_1764 -0.6 -1.5 Phosphoglycolate phosphatase 2 compare
PP_2430 -0.6 -2.1 Transcriptional regulator, AraC family compare
PP_3190 -0.6 -1.5 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_4424 -0.6 -0.9 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_0949 -0.6 -3.5 putative ATP-binding protein UPF0042 compare
PP_1988 -0.6 -2.7 3-isopropylmalate dehydrogenase compare
PP_4267 -0.6 -2.4 Recombination protein RecR compare
PP_0042 -0.6 -3.0 conserved exported protein of unknown function compare
PP_1976 -0.6 -2.6 HlyD family secretion protein compare
PP_1319 -0.6 -3.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_3967 -0.6 -1.2 MutT/nudix family protein compare
PP_2661 -0.6 -1.7 conserved protein of unknown function compare
PP_3866 -0.6 -1.5 conserved protein of unknown function compare
PP_4875 -0.6 -2.8 conserved membrane protein of unknown function compare
PP_2388 -0.6 -1.3 Transporter, LysE family compare
PP_2697 -0.6 -2.1 putative oxidoreductase containing a flavin reductase domain compare
PP_0065 -0.6 -1.8 NAD-binding component of TrK potassium transporter compare
PP_3378 -0.6 -1.1 putative 2-ketogluconokinase compare
PP_1532 -0.6 -2.9 putative Phage integrase compare
PP_3228 -0.6 -1.6 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_0345 -0.6 -1.7 putative Heptose kinase WapP compare
PP_2105 -0.6 -1.9 conserved protein of unknown function compare
PP_4233 -0.6 -1.7 putative Oxidoreductase, small subunit compare
PP_2960 -0.6 -2.2 transcriptional regulator, AraC family compare
PP_5580 -0.6 -1.1 protein of unknown function compare
PP_3971 -0.6 -0.5 conserved protein of unknown function compare
PP_1097 -0.6 -1.1 Methionine--tRNA ligase compare
PP_4680 -0.6 -3.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2330 -0.6 -2.3 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in supernatant experiments

For supernatant Supernatant; Burkholderia bryophila 376MFSha3.1 spent media across organisms