Experiment set13IT039 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.5 -5.3 excinuclease ABC chain C compare
Atu1513 -4.0 -5.4 ABC excinuclease subunit A compare
Atu2036 -3.5 -16.5 acetolactate synthase III, large subunit compare
Atu2057 -3.1 -3.0 DNA helicase II compare
Atu0043 -3.1 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu0678 -3.1 -7.1 histidyl-tRNA synthetase compare
Atu1359 -3.0 -1.7 dnaK deletion suppressor protein compare
Atu0038 -2.8 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0679 -2.8 -8.4 ATP phosphoribosyltransferase compare
Atu0039 -2.6 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0030 -2.6 -2.6 phosphocarrier protein HPr compare
Atu3707 -2.6 -2.9 phosphoserine aminotransferase compare
Atu4166 -2.4 -1.8 UDP-glucose 4-epimerase compare
Atu0537 -2.4 -8.2 histidinol dehydrogenase compare
Atu1030 -2.4 -2.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2728 -2.4 -3.5 beta (1-->2) glucan export ATP-binding protein compare
Atu0041 -2.3 -3.4 glutamine amidotransferase compare
Atu0703 -2.3 -2.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1874 -2.2 -3.5 RecA protein compare
Atu4317 -2.2 -3.2 TetR family transcriptional regulator compare
Atu3908 -2.2 -11.5 GntR family transcriptional regulator compare
Atu6098 -2.1 -1.5 transcriptional regulator, HTH family compare
Atu0769 -2.1 -2.0 protoheme IX farnesyltransferase compare
Atu3706 -2.1 -5.7 D-3-phosphoglycerate dehydrogenase compare
Atu2183 -2.1 -7.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1750 -2.0 -6.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu2001 -2.0 -5.6 excinuclease ABC subunit B compare
Atu3353 -2.0 -9.8 mannose-1-phosphate guanylyltransferase compare
Atu2464 -1.9 -3.7 formyltetrahydrofolate deformylase compare
Atu3429 -1.8 -1.9 hypothetical protein compare
Atu2207 -1.8 -4.5 two component sensor kinase compare
Atu2790 -1.8 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu1364 -1.8 -4.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1446 -1.8 -2.4 two component response regulator compare
Atu4616 -1.7 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu2791 -1.7 -8.3 3-isopropylmalate dehydrogenase compare
Atu8138 -1.7 -2.4 hypothetical protein compare
Atu2718 -1.7 -5.1 homoserine O-succinyltransferase compare
Atu1688 -1.7 -6.8 indole-3-glycerol-phosphate synthase compare
Atu4617 -1.6 -8.7 dTDP-D-glucose-4,6-dehydratase compare
Atu4610 -1.6 -10.2 sugar nucleotide epimerase/dehydratase compare
Atu8018 -1.6 -1.4 hypothetical protein compare
Atu4618 -1.6 -7.6 dTDP-rhamnose-3,5-epimerase compare
Atu2379 -1.6 -7.6 phosphomannomutase compare
Atu1205 -1.6 -8.7 threonine dehydratase compare
Atu3469 -1.6 -2.9 phosphoglyceromutase compare
Atu1307 -1.6 -3.1 dihydroorotase compare
Atu0971 -1.6 -2.9 two component sensor kinase compare
Atu1163 -1.6 -1.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3311 -1.5 -8.4 phosphomannose isomerase compare
Atu0099 -1.5 -8.5 prephenate dehydratase compare
Atu0040 -1.5 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4613 -1.5 -7.9 glycosyltransferase compare
Atu3885 -1.5 -6.6 inositol monophosphatase compare
Atu1844 -1.5 -3.0 Phosphoribosylformylglycinamidine synthetase compare
Atu1417 -1.5 -6.4 enoyl-CoA hydratase compare
Atu0434 -1.5 -3.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0298 -1.5 -5.3 orotidine 5 compare
Atu2125 -1.5 -2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu1687 -1.5 -7.2 anthranilate phosphoribosyltransferase compare
Atu2709 -1.4 -9.8 3-isopropylmalate dehydratase, large subunit compare
Atu4148 -1.4 -5.3 UDP-glucuronic acid epimerase compare
Atu2040 -1.4 -4.7 phosphoserine phosphatase compare
Atu1588 -1.4 -6.3 homoserine dehydrogenase compare
Atu0331 -1.4 -3.0 sigma-54 modulation protein compare
Atu3739 -1.4 -2.7 phosphoglycerate kinase compare
Atu5164 -1.4 -1.3 type IV secretion protein AvhB3 compare
Atu2439 -1.4 -1.8 hypothetical protein compare
Atu4615 -1.4 -5.9 glucose-1-phosphate thymidylyltransferase compare
Atu3730 -1.3 -2.0 hypothetical protein compare
Atu5540 -1.3 -1.5 hypothetical protein compare
Atu3754 -1.3 -4.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1447 -1.3 -2.2 two component sensor kinase compare
Atu2433 -1.3 -1.6 hypothetical protein compare
Atu1076 -1.3 -4.4 colicin V production protein compare
Atu3755 -1.3 -2.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0400 -1.3 -3.4 orotate phosphoribosyltransferase compare
Atu2264 -1.3 -7.9 2-isopropylmalate synthase compare
Atu1902 -1.3 -3.2 transketolase compare
Atu1308 -1.2 -4.5 aspartate carbamoyl transferase catalytic subunit compare
Atu0486 -1.2 -4.8 dihydroorotate dehydrogenase compare
Atu0399 -1.2 -4.4 dihydroorotase compare
Atu2555 -1.2 -3.8 L-lysine 2,3-aminomutase compare
Atu0687 -1.2 -1.9 hypothetical protein compare
Atu0101 -1.2 -4.1 cytochrome c compare
Atu0422 -1.2 -2.2 ABC transporter, membrane spanning protein compare
Atu1566 -1.2 -1.5 hypothetical protein compare
Atu4173 -1.2 -2.4 phosphoenolpyruvate-protein phosphotransferase compare
Atu4773 -1.2 -1.5 two component response regulator compare
Atu4711 -1.2 -3.8 two component sensor kinase compare
Atu1850 -1.2 -2.8 phosphoribosylformylglycinamidine synthetase II compare
Atu2640 -1.2 -3.9 hypothetical protein compare
Atu4608 -1.1 -7.9 hypothetical protein compare
Atu0401 -1.1 -5.9 fructokinase compare
Atu0188 -1.1 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu1629 -1.1 -1.2 transcriptional regulator, ArsR family compare
Atu4614 -1.1 -5.4 glycosyltransferase compare
Atu0093 -1.1 -4.3 Recombination protein compare
Atu0499 -1.1 -5.6 hypothetical protein compare
Atu0876 -1.1 -1.4 superoxide dismutase compare
Atu2831 -1.1 -3.6 glucose inhibited division protein A compare
Atu2590 -1.1 -7.1 hypothetical protein compare
Atu0029 -1.1 -3.4 S-adenosylhomocysteine hydrolase compare
Atu0050 -1.1 -4.0 two component response regulator compare
Atu2592 -1.1 -5.9 hypothetical protein compare
Atu2722 -1.1 -4.8 porin compare
Atu0189 -1.1 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu1705 -1.1 -2.6 SEC-independent protein translocase protein compare
Atu3183 -1.1 -0.9 hypothetical protein compare
Atu2141 -1.0 -3.3 hypothetical protein compare
Atu4149 -1.0 -6.4 UDP-glucose 6-dehydrogenase compare
Atu1677 -1.0 -3.5 queuine tRNA-ribosyltransferase compare
Atu0073 -1.0 -4.0 recF-like protein compare
Atu2584 -1.0 -3.8 hypothetical protein compare
Atu1028 -1.0 -1.7 hypothetical protein compare
Atu5125 -1.0 -3.5 GntR family transcriptional regulator compare
Atu2289 -1.0 -7.8 anthranilate synthase component I and II compare
Atu0647 -1.0 -4.0 phosphoribosylamine--glycine ligase compare
Atu2633 -1.0 -2.0 RhtB family transporter compare
Atu4609 -1.0 -6.6 glycosyltransferase compare
Atu3609 -1.0 -5.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu1904 -1.0 -1.9 transcriptional regulator compare
Atu1339 -1.0 -2.9 ribonuclease E compare
Atu0895 -1.0 -2.5 ABC transporter, substrate binding protein compare
Atu2577 -1.0 -7.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu6189 -1.0 -1.8 protein secretion chaperone compare
Atu1810 -1.0 -1.0 hypothetical protein compare
Atu5160 -1.0 -2.0 transcriptional regulator protein compare
Atu2582 -1.0 -5.3 UDP-glucose/GDP-mannose dehydrogenase compare
Atu8167 -1.0 -5.5 putative transmembrane protein compare
Atu0031 -1.0 -1.1 PTS system, IIA component compare
Atu2583 -0.9 -6.3 glycosyltransferase compare
Atu2052 -0.9 -3.8 hypothetical protein compare
Atu4077 -0.9 -5.8 glycogen branching protein compare
Atu1258 -0.9 -3.4 ATP-dependent Clp protease, proteolytic subunit compare
Atu1099 -0.9 -3.9 hypothetical protein compare
Atu5173 -0.9 -1.7 dehydrogenase compare
Atu0184 -0.9 -2.0 glucokinase compare
Atu3610 -0.9 -2.0 transporter compare
Atu4277 -0.9 -4.5 LamB/YcsF family protein compare
Atu4896 -0.9 -1.5 acetyltransferase compare
Atu1291 -0.9 -1.9 hypothetical protein compare
Atu2591 -0.9 -5.6 glucosyltransferase compare
Atu1077 -0.9 -2.6 DNA repair protein compare
Atu4792 -0.9 -1.4 hypothetical protein compare
Atu3008 -0.9 -0.6 hypothetical protein compare
Atu3485 -0.9 -5.1 short chain dehydrogenase compare
Atu1679 -0.8 -2.2 peptidyl prolyl cis-trans isomerase compare
Atu1140 -0.8 -3.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1141 -0.8 -2.5 Phosphoribosylglycinamide synthetase compare
Atu2809 -0.8 -4.3 cobalamin biosynthesis protein compare
Atu1646 -0.8 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0368 -0.8 -3.7 tRNA pseudouridine synthase I compare
Atu0201 -0.8 -1.4 hypothetical protein compare
Atu2073 -0.8 -2.6 membrane protein compare
Atu4527 -0.8 -1.3 hypothetical protein compare
Atu2832 -0.8 -2.5 tRNA modification GTPase compare
Atu0977 -0.8 -2.6 serine protease DO-like protease compare
Atu0107 -0.8 -1.5 hypothetical protein compare
Atu1039 -0.8 -2.1 DNA repair protein RecO compare
Atu1619 -0.8 -1.7 protein-export membrane protein SECG compare
Atu4223 -0.8 -1.3 sarcosine oxidase delta subunit compare
Atu0809 -0.8 -1.5 hypothetical protein compare
Atu2710 -0.8 -4.4 hypothetical protein compare
Atu1778 -0.8 -5.9 transcription-repair coupling factor compare
Atu2554 -0.8 -1.1 lysyl-tRNA synthetase compare
Atu1445 -0.8 -2.3 two component sensor kinase compare
Atu8094 -0.8 -2.6 hypothetical protein compare
Atu0190 -0.8 -3.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0690 -0.8 -1.1 hypothetical protein compare
Atu1075 -0.8 -3.4 amidophosphoribosyltransferase compare
Atu1891 -0.8 -2.4 cobalamin biosynthesis protein compare
Atu1260 -0.8 -1.2 hypothetical protein compare
Atu3327 -0.8 -1.8 succinoglycan exopolysaccharide synthesis protein compare
Atu0677 -0.7 -1.5 hypothetical protein compare
Atu1644 -0.7 -2.2 hypothetical protein compare
Atu1647 -0.7 -4.1 ABC transporter, membrane spanning protein compare
Atu0413 -0.7 -1.6 stress induced protein compare
Atu2807 -0.7 -3.9 cob(I)alamin adenosyltransferase compare
Atu0689 -0.7 -4.5 ribosomal large subunit pseudouridine synthase B compare
Atu4176 -0.7 -3.3 hypothetical protein compare
Atu1645 -0.7 -3.3 ABC transporter, substrate binding protein compare
Atu1774 -0.7 -4.0 ABC transporter, substrate binding protein (peptide) compare
Atu1845 -0.7 -2.3 phosphoribosylformylglycinamidine synthase I compare
Atu1468 -0.7 -3.7 hypothetical protein compare
Atu5130 -0.7 -3.0 attachment protein compare
Atu3603 -0.7 -1.2 two component response regulator compare
Atu4275 -0.7 -4.2 hypothetical protein compare
Atu0086 -0.7 -0.7 ribosome-binding factor A compare
Atu4882 -0.7 -1.4 hypothetical protein compare
Atu0660 -0.7 -3.6 hydrolase compare
Atu1529 -0.7 -2.9 nitrogen fixation protein FixH compare
Atu2650 -0.7 -4.6 glycerol-3-phosphate dehydrogenase compare
Atu2585 -0.7 -2.7 hypothetical protein compare
Atu0141 -0.7 -1.0 cytochrome O ubiquinol oxidase subunit I compare
Atu0269 -0.7 -2.5 exodeoxyribonuclease VII large subunit compare
Atu2113 -0.7 -1.5 N-acetylmuramoyl-L-alanine amidase compare
Atu0153 -0.7 -1.8 transcriptional regulator, Fur family compare
Atu3727 -0.7 -2.5 hypothetical protein compare
Atu2824 -0.7 -2.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days across organisms